Rmu_sc0014673.1_g000002

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014673.1
OG0020481
Physical Location & Seq
Forward (+)
1366 .. 2443
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014673.1_g000002.1.cds

Sequence Viewer

Length: 651 bp
atgttggcaaggctggaaaggtggcttcccggcgacggatttgtgacttccggataccgttaccaaaaggtgtacaaaagttgtttcaatcaaagattacaaggttttggtgggggaaaagaggggggaagaaagggttgcattggtgtaaatgggagcttctttgtcggagcacctcactctttggtgggaaggcttctcagagctaaatatctcccggatgtggaatggatgaacgcaagagtggttagaggttcatctttagtttggcggggtcttgtctggggcaaggatgttctcaatcttggcatgcgctggagggttgatctcatttatgcccagtttcttgagtttgaagcaaaaactatactttctatcccattgcctaaatatggtagccttgataagttgatctggcactatactaagaataggagatttacggtaaagtccggctattgggttgctacgcaagaaaaatcaaggaaggatgggttgattacctcaagtggtagtgcgaatgggagtaatgggtaccgtatgggttggaagaagctttgggggttacatcttccaaataaaataaaggtgtttgtgtggagggcttgtaatgggtctattccttgtgcagctgctttgaaaggtagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

216

Amino Acids

24.41

Weight (kDa)

10.36

Isoelectric Point (pI)

23.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020481)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0329231
rosa_laevigata RLG00000029908
rosa_multiflora Rmu_sc0000156.1_g000010 Rmu_sc0014673.1_g000002
rosa_roxburghii Rroxscaffold_2G00140680 Rroxscaffold_4G00278730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 534
AccB1I GGYRCC 1 cut(s) 534
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 1 cut(s) 271
AfaI GTAC 2 cut(s) 74, 536
AfiI CCNNNNNNNGG 4 cut(s) 35, 223, 392, 459
AgsI TTSAA 3 cut(s) 88, 356, 640
AluBI AGCT 4 cut(s) 159, 206, 556, 632
AluI AGCT 4 cut(s) 159, 206, 556, 632
Alw21I GWGCWC 1 cut(s) 175
Aor13HI TCCGGA 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 629, 632
Asp718I GGTACC 1 cut(s) 534
AspLEI GCGC 1 cut(s) 315
AsuC2I CCSGG 2 cut(s) 30, 218
BanI GGYRCC 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 2 cut(s) 619, 641
BccI CCATC 1 cut(s) 485
BciVI GTATCC 1 cut(s) 47
BcnI CCSGG 2 cut(s) 30, 218
BfuI GTATCC 1 cut(s) 47
BisI GCNGC 2 cut(s) 630, 633
BlsI GCNGC 2 cut(s) 631, 634
Bme1390I CCNGG 2 cut(s) 30, 218
BmiI GGNNCC 1 cut(s) 536
BmrFI CCNGG 2 cut(s) 30, 218
BmrI ACTGGG 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 337
BpuEI CTTGAG 2 cut(s) 368, 490
BpuMI CCSGG 2 cut(s) 30, 218
BsaWI WCCGGW 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 223, 392, 459
Bse1I ACTGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 380
BseAI TCCGGA 1 cut(s) 50
BseGI GGATG 4 cut(s) 226, 237, 298, 496
BseLI CCNNNNNNNGG 4 cut(s) 35, 223, 392, 459
BseMI GCAATG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 340
BseXI GCAGC 2 cut(s) 619, 641
BsgI GTGCAG 1 cut(s) 648
BshNI GGYRCC 1 cut(s) 534
BsiHKAI GWGCWC 1 cut(s) 175
BsiSI CCGG 4 cut(s) 30, 51, 218, 453
BslI CCNNNNNNNGG 4 cut(s) 35, 223, 392, 459
Bsp1286I GDGCHC 1 cut(s) 175
Bsp13I TCCGGA 1 cut(s) 50
Bsp1407I TGTACA 1 cut(s) 72
Bsp143I GATC 2 cut(s) 325, 411
BspACI CCGC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 213
BspEI TCCGGA 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 536
BspT107I GGYRCC 1 cut(s) 534
BsrDI GCAATG 1 cut(s) 380
BsrGI TGTACA 1 cut(s) 72
BsrI ACTGG 1 cut(s) 340
BssMI GATC 2 cut(s) 325, 411
Bst4CI ACNGT 3 cut(s) 59, 445, 539
BstAUI TGTACA 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 2 cut(s) 200, 426
BstF5I GGATG 4 cut(s) 226, 237, 298, 496
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 2 cut(s) 328, 414
BstMBI GATC 2 cut(s) 325, 411
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 2 cut(s) 28, 216
BstV1I GCAGC 2 cut(s) 619, 641
BsuI GTATCC 1 cut(s) 47
BtsCI GGATG 4 cut(s) 226, 237, 298, 496
Cac8I GCNNGC 1 cut(s) 311
CfoI GCGC 1 cut(s) 315
Csp6I GTAC 2 cut(s) 73, 535
CviAII CATG 1 cut(s) 310
CviQI GTAC 2 cut(s) 73, 535
DdeI CTNAG 2 cut(s) 200, 426
DpnI GATC 2 cut(s) 327, 413
DpnII GATC 2 cut(s) 325, 411
FaeI CATG 1 cut(s) 313
FaiI YATR 6 cut(s) 311, 336, 368, 393, 423, 542
FatI CATG 1 cut(s) 309
FauI CCCGC 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 630, 633
FokI GGATG 4 cut(s) 233, 244, 305, 503
Fsp4HI GCNGC 2 cut(s) 630, 633
GlaI GCGC 1 cut(s) 314
GluI GCNGC 2 cut(s) 630, 633
GsuI CTGGAG 1 cut(s) 337
HapII CCGG 4 cut(s) 30, 51, 218, 453
HhaI GCGC 1 cut(s) 315
Hin1II CATG 1 cut(s) 313
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HindIII AAGCTT 1 cut(s) 554
HpaII CCGG 4 cut(s) 30, 51, 218, 453
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 170, 203
Hpy188III TCNNGA 2 cut(s) 51, 347
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 186, 481
HpyCH4III ACNGT 3 cut(s) 59, 445, 539
HpyCH4V TGCA 2 cut(s) 141, 629
HpyF3I CTNAG 2 cut(s) 200, 426
Hsp92II CATG 1 cut(s) 313
HspAI GCGC 1 cut(s) 313
Kpn2I TCCGGA 1 cut(s) 50
KpnI GGTACC 1 cut(s) 538
Kzo9I GATC 2 cut(s) 325, 411
LmnI GCTCC 2 cut(s) 156, 170
LpnPI CCDG 8 cut(s) 43, 64, 231, 268, 301, 353, 400, 466
Lsp1109I GCAGC 2 cut(s) 619, 641
MaeIII GTNAC 3 cut(s) 43, 59, 564
MalI GATC 2 cut(s) 327, 413
MboI GATC 2 cut(s) 325, 411
MboII GAAGA 3 cut(s) 141, 562, 563
MhlI GDGCHC 1 cut(s) 175
MmeI TCCRAC 2 cut(s) 148, 527
MnlI CCTC 6 cut(s) 115, 186, 245, 312, 514, 594
MroI TCCGGA 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 4 cut(s) 30, 51, 218, 453
MspR9I CCNGG 2 cut(s) 30, 218
NciI CCSGG 2 cut(s) 30, 218
NdeII GATC 2 cut(s) 325, 411
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 1 cut(s) 536
NmuCI GTSAC 1 cut(s) 43
NspI RCATGY 1 cut(s) 313
PaeI GCATGC 1 cut(s) 313
PfoI TCCNGGA 1 cut(s) 216
PkrI GCNGC 2 cut(s) 631, 634
PspN4I GGNNCC 1 cut(s) 536
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 2 cut(s) 74, 536
RsaNI GTAC 2 cut(s) 73, 535
SatI GCNGC 2 cut(s) 630, 633
Sau3AI GATC 2 cut(s) 325, 411
ScrFI CCNGG 2 cut(s) 30, 218
SduI GDGCHC 1 cut(s) 175
SmlI CTYRAG 2 cut(s) 347, 505
SmoI CTYRAG 2 cut(s) 347, 505
SphI GCATGC 1 cut(s) 313
SsiI CCGC 1 cut(s) 271
StyD4I CCNGG 2 cut(s) 28, 216
TaaI ACNGT 3 cut(s) 59, 445, 539
TatI WGTACW 1 cut(s) 72
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 2 cut(s) 629, 632
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 246, 248
TspGWI ACGGA 1 cut(s) 51
XceI RCATGY 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.