Rmu_sc0000222.1_g000003

ARF guanine-nucleotide exchange factor GNOM-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000222.1
OG0020707
Physical Location & Seq
Forward (+)
14950 .. 17770
2821 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1188 bp
atgatcagagccgatcattttaaccgtgacccaaagaaagggttggagttcctccaaggaactcatctcttgcctgataaacttgatcctcaaagtgtggcatgcttttttaggtatacaagtgggctagacaagaatcttgttgtggatttcttgggaaatcatgacgagttttgtgttcaagttcttcacaaatttgctggtacctttgatttccaagatatgaatttggatactacactccgccttttcttggagacttttcgtttgcctggagaatcacaaaagatacaaagggttcttgaagcattctcagagatatactacgagcaatcacctctaattctagcaaacaaggatgttgctcttctgttatcatattcaatcataatgcttaatacagatcagcacaatgttcaggtgaagaagaagatgacagaggaggatttcattcggaataatagacacatcaatggaggcaatgatctacctcgagatttcctgacagagctttatcactcaatatgcaagaatgagattcgcactactccagaacaaggtgctggttatcctgagatgaccccaagccggtggattgatttgatgcacaaatctaagaaaaatgctccattcattgtatctgattccagagcctacctagaccatgatatgtttgctataatatctggccctacaattgctgccatctctatggtatttgatcatgcagaacatgaagaggtttatcaaacatgcattaatggatttttagctattgcaaagatttcagcatgccaccatcttgaagatgtactagatgatttggttgtgtctctctgtaagttcacaactctgctaaacccatcatcagtggaggaacatgtgctagcctttggtgacgacacaaaagctaggatgtcaactgtgacagttttcaccattgccaataggaatttgggtccggtccgaggagaagagaaaagaaagggggagggggctggaggtgaatttgggtatggggttactcttggatttgggagtgaaagtggagcatcgcaaactcccaatgagacaccagctaggtcaagcaccggaacaacaccaactgctacaagtgaatctgctgcaccgcttatgcttcctcccccaccaccttctgcagctggaacttggaagttggaactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000281 GO:0000578 GO:0000902 GO:0000910 GO:0000911 GO:0001736 GO:0001738 GO:0002009 GO:0003006 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007049 GO:0007155 GO:0007164 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009826 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009942 GO:0009987 GO:0010008 GO:0010015 GO:0010053 GO:0010054 GO:0010087 GO:0010101 GO:0010102 GO:0010154 GO:0010274 GO:0010311 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016197 GO:0019899 GO:0021700 GO:0022402 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032509 GO:0032879 GO:0032989 GO:0040007 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046907 GO:0046983 GO:0048209 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048729 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0060341 GO:0060429 GO:0060560 GO:0060627 GO:0060918 GO:0061458 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0071554 GO:0071555 GO:0071695 GO:0071840 GO:0071944 GO:0071985 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0097708 GO:0098588 GO:0098657 GO:0098772 GO:0098791 GO:0098805 GO:0099402 GO:1902410 GO:1903047 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Sec7 Sec7_N

Protein Analysis

395

Amino Acids

43.96

Weight (kDa)

5.39

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7 PF01369 4 - 180 7.6e-68 Sec7 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020707)

Species Orthologous Gene IDs
rosa_laevigata RLG00000034470
rosa_multiflora Rmu_sc0000222.1_g000003 Rmu_sc0003113.1_g000008
rosa_samantha Rh2AG508300 Rh2CG493800
rosa_wichuraiana Rw7G035390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 116
AciI CCGC 2 cut(s) 244, 1130
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 4 cut(s) 194, 226, 952, 1007
AfaI GTAC 2 cut(s) 205, 813
AfiI CCNNNNNNNGG 5 cut(s) 38, 253, 557, 588, 968
AflIII ACRYGT 1 cut(s) 880
AgsI TTSAA 4 cut(s) 182, 305, 384, 806
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 5 cut(s) 511, 773, 911, 1079, 1163
AluI AGCT 5 cut(s) 511, 773, 911, 1079, 1163
Alw26I GTCTC 3 cut(s) 251, 837, 1064
AlwI GGATC 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 492
AoxI GGCC 1 cut(s) 688
ApeKI GCWGC 3 cut(s) 701, 1124, 1160
ApoI RAATTY 4 cut(s) 194, 226, 952, 1007
ArsI GACNNNNNNTTYG 2 cut(s) 250, 282
AseI ATTAAT 1 cut(s) 759
Asp718I GGTACC 1 cut(s) 203
AspS9I GGNCC 3 cut(s) 689, 959, 964
AsuHPI GGTGA 5 cut(s) 327, 433, 908, 928, 1016
AsuNHI GCTAGC 1 cut(s) 886
AvaI CYCGRG 1 cut(s) 492
AvaII GGWCC 2 cut(s) 959, 964
BanI GGYRCC 1 cut(s) 203
BbvI GCAGC 3 cut(s) 688, 1111, 1172
BccI CCATC 3 cut(s) 713, 807, 871
BciT130I CCWGG 1 cut(s) 273
BciVI GTATCC 1 cut(s) 226
BclI TGATCA 2 cut(s) 3, 721
BcoDI GTCTC 3 cut(s) 251, 837, 1064
BfaI CTAG 7 cut(s) 128, 347, 659, 815, 887, 912, 1080
BfmI CTRYAG 1 cut(s) 1158
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 3 cut(s) 702, 1125, 1161
BlsI GCNGC 3 cut(s) 703, 1126, 1162
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 2 cut(s) 959, 964
BmeT110I CYCGRG 1 cut(s) 492
BmgT120I GGNCC 3 cut(s) 689, 959, 964
BmiI GGNNCC 2 cut(s) 205, 960
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 2 cut(s) 594, 1061
BmtI GCTAGC 1 cut(s) 890
BpmI CTGGAG 3 cut(s) 294, 534, 1020
BsaJI CCNNGG 2 cut(s) 55, 967
BsaWI WCCGGW 2 cut(s) 961, 1091
BsaXI ACNNNNNCTCC 2 cut(s) 1030, 1060
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 253, 557, 588, 968
Bse118I RCCGGY 1 cut(s) 588
Bse3DI GCAATG 2 cut(s) 487, 939
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 55, 967
BseGI GGATG 2 cut(s) 364, 921
BseLI CCNNNNNNNGG 5 cut(s) 38, 253, 557, 588, 968
BseMI GCAATG 2 cut(s) 487, 939
BseMII CTCAG 2 cut(s) 327, 564
BseRI GAGGAG 2 cut(s) 455, 984
BseXI GCAGC 3 cut(s) 688, 1111, 1172
BsgI GTGCAG 1 cut(s) 1110
BshFI GGCC 1 cut(s) 690
BshNI GGYRCC 1 cut(s) 203
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 3 cut(s) 589, 962, 1092
BslI CCNNNNNNNGG 5 cut(s) 38, 253, 557, 588, 968
BsmAI GTCTC 3 cut(s) 251, 837, 1064
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 1 cut(s) 690
BsoBI CYCGRG 1 cut(s) 492
Bsp143I GATC 6 cut(s) 3, 13, 85, 403, 484, 721
BspACI CCGC 2 cut(s) 244, 1130
BspANI GGCC 1 cut(s) 690
BspCNI CTCAG 2 cut(s) 326, 565
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 2 cut(s) 205, 960
BspMAI CTGCAG 1 cut(s) 1162
BspOI GCTAGC 1 cut(s) 890
BspPI GGATC 1 cut(s) 80
BspQI GCTCTTC 1 cut(s) 372
BspT107I GGYRCC 1 cut(s) 203
BsrDI GCAATG 2 cut(s) 487, 939
BsrFI RCCGGY 1 cut(s) 588
BssAI RCCGGY 1 cut(s) 588
BssECI CCNNGG 2 cut(s) 55, 967
BssMI GATC 6 cut(s) 3, 13, 85, 403, 484, 721
BssNAI GTATAC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 55
Bst1107I GTATAC 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 3 cut(s) 26, 925, 931
Bst6I CTCTTC 3 cut(s) 372, 732, 969
BstC8I GCNNGC 3 cut(s) 103, 793, 888
BstDEI CTNAG 3 cut(s) 313, 573, 615
BstF5I GGATG 2 cut(s) 364, 921
BstKTI GATC 6 cut(s) 6, 16, 88, 406, 487, 724
BstMAI GTCTC 3 cut(s) 251, 837, 1064
BstMBI GATC 6 cut(s) 3, 13, 85, 403, 484, 721
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 4 cut(s) 105, 756, 795, 884
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 1158
BstV1I GCAGC 3 cut(s) 688, 1111, 1172
BstXI CCANNNNNNTGG 2 cut(s) 591, 712
BstZ17I GTATAC 1 cut(s) 117
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 1 cut(s) 690
BtgZI GCGATG 1 cut(s) 1038
BtsCI GGATG 2 cut(s) 364, 921
BtsIMutI CAGTG 1 cut(s) 876
Cac8I GCNNGC 3 cut(s) 103, 793, 888
CciI TCATGA 1 cut(s) 163
Cfr10I RCCGGY 1 cut(s) 588
Cfr13I GGNCC 3 cut(s) 689, 959, 964
CpoI CGGWCCG 1 cut(s) 964
Csp6I GTAC 2 cut(s) 204, 812
CspI CGGWCCG 1 cut(s) 964
CviAII CATG 8 cut(s) 102, 164, 665, 725, 734, 753, 792, 881
CviQI GTAC 2 cut(s) 204, 812
DdeI CTNAG 3 cut(s) 313, 573, 615
DpnI GATC 6 cut(s) 5, 15, 87, 405, 486, 723
DpnII GATC 6 cut(s) 3, 13, 85, 403, 484, 721
Eam1104I CTCTTC 3 cut(s) 372, 732, 969
EarI CTCTTC 3 cut(s) 372, 732, 969
EciI GGCGGA 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 959, 964
Eco88I CYCGRG 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 55
EcoT22I ATGCAT 1 cut(s) 758
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 8 cut(s) 105, 167, 668, 728, 737, 756, 795, 884
FatI CATG 8 cut(s) 101, 163, 664, 724, 733, 752, 791, 880
FbaI TGATCA 2 cut(s) 3, 721
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 3 cut(s) 702, 1125, 1161
FokI GGATG 2 cut(s) 371, 928
Fsp4HI GCNGC 3 cut(s) 702, 1125, 1161
FspBI CTAG 7 cut(s) 128, 347, 659, 815, 887, 912, 1080
GluI GCNGC 3 cut(s) 702, 1125, 1161
GsuI CTGGAG 3 cut(s) 294, 534, 1020
HaeIII GGCC 1 cut(s) 690
HapII CCGG 3 cut(s) 589, 962, 1092
Hin1II CATG 8 cut(s) 105, 167, 668, 728, 737, 756, 795, 884
HincII GTYRAC 1 cut(s) 921
HindII GTYRAC 1 cut(s) 921
HinfI GANTC 5 cut(s) 136, 278, 538, 644, 1118
HpaII CCGG 3 cut(s) 589, 962, 1092
HphI GGTGA 5 cut(s) 327, 433, 908, 928, 1016
Hpy166II GTNNAC 3 cut(s) 117, 846, 921
Hpy188I TCNGA 5 cut(s) 8, 316, 456, 643, 968
Hpy188III TCNNGA 8 cut(s) 164, 302, 494, 502, 551, 572, 648, 803
Hpy8I GTNNAC 3 cut(s) 117, 846, 921
HpyAV CCTTC 1 cut(s) 1164
HpyCH4III ACNGT 3 cut(s) 26, 925, 931
HpyCH4V TGCA 7 cut(s) 528, 607, 728, 756, 779, 1127, 1160
HpyF3I CTNAG 3 cut(s) 313, 573, 615
Hsp92II CATG 8 cut(s) 105, 167, 668, 728, 737, 756, 795, 884
KpnI GGTACC 1 cut(s) 207
Ksp22I TGATCA 2 cut(s) 3, 721
Kzo9I GATC 6 cut(s) 3, 13, 85, 403, 484, 721
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 2 cut(s) 631, 1049
Lsp1109I GCAGC 3 cut(s) 688, 1111, 1172
LweI GCATC 2 cut(s) 594, 1061
MaeI CTAG 7 cut(s) 128, 347, 659, 815, 887, 912, 1080
MaeIII GTNAC 4 cut(s) 26, 896, 925, 1021
MalI GATC 6 cut(s) 5, 15, 87, 405, 486, 723
MboI GATC 6 cut(s) 3, 13, 85, 403, 484, 721
MboII GAAGA 8 cut(s) 179, 359, 436, 439, 442, 749, 818, 986
MfeI CAATTG 1 cut(s) 696
MluCI AATT 6 cut(s) 194, 226, 342, 696, 952, 1007
MmeI TCCRAC 2 cut(s) 24, 1158
Mph1103I ATGCAT 1 cut(s) 758
MseI TTAA 3 cut(s) 21, 396, 759
MslI CAYNNNNRTG 2 cut(s) 471, 710
MspA1I CMGCKG 1 cut(s) 1163
MspI CCGG 3 cut(s) 589, 962, 1092
MspR9I CCNGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 696
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 1 cut(s) 273
NdeII GATC 6 cut(s) 3, 13, 85, 403, 484, 721
NheI GCTAGC 1 cut(s) 886
NlaIII CATG 8 cut(s) 105, 167, 668, 728, 737, 756, 795, 884
NlaIV GGNNCC 2 cut(s) 205, 960
NmuCI GTSAC 3 cut(s) 26, 896, 925
NsiI ATGCAT 1 cut(s) 758
NspI RCATGY 4 cut(s) 105, 756, 795, 884
PaeI GCATGC 2 cut(s) 105, 795
PaeR7I CTCGAG 1 cut(s) 492
PagI TCATGA 1 cut(s) 163
PciI ACATGT 1 cut(s) 880
PciSI GCTCTTC 1 cut(s) 372
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 5 cut(s) 136, 278, 538, 644, 1118
PkrI GCNGC 3 cut(s) 703, 1126, 1162
PscI ACATGT 1 cut(s) 880
PshBI ATTAAT 1 cut(s) 759
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 205, 960
PspPI GGNCC 3 cut(s) 689, 959, 964
PstI CTGCAG 1 cut(s) 1162
PvuII CAGCTG 1 cut(s) 1163
RsaI GTAC 2 cut(s) 205, 813
RsaNI GTAC 2 cut(s) 204, 812
RseI CAYNNNNRTG 2 cut(s) 471, 710
Rsr2I CGGWCCG 1 cut(s) 964
RsrII CGGWCCG 1 cut(s) 964
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 3 cut(s) 21, 396, 759
SatI GCNGC 3 cut(s) 702, 1125, 1161
Sau3AI GATC 6 cut(s) 3, 13, 85, 403, 484, 721
Sau96I GGNCC 3 cut(s) 689, 959, 964
ScrFI CCNGG 1 cut(s) 273
SfaNI GCATC 2 cut(s) 594, 1061
SfcI CTRYAG 1 cut(s) 1158
Sfr274I CTCGAG 1 cut(s) 492
SinI GGWCC 2 cut(s) 959, 964
SlaI CTCGAG 1 cut(s) 492
SmiMI CAYNNNNRTG 2 cut(s) 471, 710
SmlI CTYRAG 1 cut(s) 492
SmoI CTYRAG 1 cut(s) 492
SphI GCATGC 2 cut(s) 105, 795
Sse9I AATT 6 cut(s) 194, 226, 342, 696, 952, 1007
SsiI CCGC 2 cut(s) 244, 1130
SspMI CTAG 7 cut(s) 128, 347, 659, 815, 887, 912, 1080
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 3 cut(s) 26, 925, 931
TaqI TCGA 1 cut(s) 493
TasI AATT 6 cut(s) 194, 226, 342, 696, 952, 1007
TatI WGTACW 1 cut(s) 811
TfiI GAWTC 5 cut(s) 136, 278, 538, 644, 1118
Tru1I TTAA 3 cut(s) 21, 396, 759
Tru9I TTAA 3 cut(s) 21, 396, 759
TscAI CASTG 1 cut(s) 876
TseFI GTSAC 3 cut(s) 26, 896, 925
TseI GCWGC 3 cut(s) 701, 1124, 1160
Tsp45I GTSAC 3 cut(s) 26, 896, 925
TspDTI ATGAA 4 cut(s) 239, 439, 622, 750
TspRI CASTG 1 cut(s) 876
VpaK11BI GGWCC 2 cut(s) 959, 964
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 4 cut(s) 194, 226, 952, 1007
XceI RCATGY 4 cut(s) 105, 756, 795, 884
XcmI CCANNNNNNNNNTGG 1 cut(s) 952
XhoI CTCGAG 1 cut(s) 492
XmiI GTMKAC 1 cut(s) 116
XspI CTAG 7 cut(s) 128, 347, 659, 815, 887, 912, 1080
Zsp2I ATGCAT 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.