Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000259.1

Orthogroup ID

OG0013064

Physical Location & Seq

Genomic Coordinates Forward (+)

3520 .. 12099

Gene Structure 8580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000259.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2295 bp

atggatagggaagaacgaagcgaatgggaggagcagtgccgtctgtacgaggcctacaacgagctccacggcctcgcccaagccttcgacactcccttcgacgctcccgccgtcctcgtcgtcggccaccagacagatggcaagagcgcattggtcgaagccctcatgggcttccagttcaaccacgtcggcggcggcaccaagacccgccgccccatcactctccacatgaagtacgacccggactcccactcccctctctgccgcctcgtctccgactccgacccggcccaggcccaccccaagtccctccaggacatccaggcttacattgaggccgagaacatgcggctcgagaaggagccttgtctcttctccgccaaggagatcattattagagtggagtacaagtactgccccaacctcaccattatcgacactcctggcctcattgctcctgctcccggccccaaaaaccgagcattgcaggttcaagctcgtgcggtggaagcactcgtgcgagctaaaatgcagcataaagagctcattatattgtgtcttgaagattgcagtgactggagtaatgcaactacgcggagggtagtaatgcaaatcgatcctgagctctcgaggactgtaattgtttcaaccaagctcgatacgaaaataccccagtttgcacgctcatcagacgtggaagtgtttctgtcacctcccacatgtatgctcgatgggtgcatcttgggagactcgcctttctttacttctgtgccgtctggaagagttggttttggacatgattcggtttacagatctaatgatgagtttaaacaggcaatatctgtaagagaaaaggaagatgttgcaagcttagaggaaaaattgggccggtcactgtctgtacaagagagaagtaggataggtataagtaaacttaggtcttttctggaagaattgctacagaaaaggtacatggaaaatgtaccactgatcattccacttcttgagaaggaataccggagtgcaacaagaaggatgaatgaaataaatcaagaactcagcactttggatgaactgaaactaaaggagaaagggagattatttcatgatatgttcttgacgaagttatcattgctattgaaaggaacagttgttgcaccgccagacaaatttggagaaacactacaagatgagcgaactaacggaggagcatttgtcagtagcgatggccttcagttccctcacaagcttatacctaatgcaggaatgcgtctctatgggggtgcacaataccatcgtgccatggctgagtttcgttttgtagttggaggaacaaaatgccctccaattacaagggaagaaatcgtgaatgcatgtggagttgaagatttacatgatggaacaaactactctaggacagcttgtgtaatagctgttgcaaaggctcgtgatacatttgagcctttccttcatcagttgggtggtagactcttgcatattctgaagagattgcttccaatatctgtttatcttcttcagaaagatggtgagtatttgagtggccatgaggtgtttctcaggcgtgttgcctctgcattcaatgactttgcagaatctaccgaaagggcatgtcgtgaaaaatgtatggaggatttagtaagcactacacgctacgtcacatggtctcttcacaataagaatcgtgctgggttacgtcagttcttggactcgttttctggaacagaacataccactgtgggtggtacttctgtgtcttctggtctttctcaagattcagcagttgggtcagtcgccaatgagaaggacaccaagtcacgggcagatgtgaagctcagtcatctggcctctggcaatgacttgacttctattcaaactacagaaacaaggctggctgatctgctagatagtacactttggaataggaaacttgctccttcatctgaaaggattgtttatgctttggtgcagcagatatttcatggcataagagaatatttcttggcctccgcagagttgaagttcaactgctttctcttgatgcctgttgtagataagttgcctgcactccttagagaagacttgaaatctgcttttgaagatgatttggataatatttttgatatcacaaacctgcggaacttattgggccagcgaaagcgagacgtagaggttgagcttaaaaggatcaagaggcttaaggataaattcagatcactacatgagcagctgagttcggttagacgcaatgctaatgtcttttctgactccagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0007623 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016559 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048511 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_N WD40

Protein Analysis

764

Amino Acids

86.06

Weight (kDa)

6.5

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19720 AT3G19720 AT3G19720
fragaria_vesca	FvH4_5g30610 FvH4_5g30610 FvH4_5g30610
malus_domestica	MD08G1222200.v1.1 MD15G1415600.v1.1
prunus_persica	Prupe.1G560000_v2.0.a1
pyrus_communis	pycom08g19300
rosa_chinensis	RchiOBHm_Chr7g0225491
rosa_laevigata	RLG00000001812
rosa_multiflora	Rmu_sc0000259.1_g000003
rosa_roxburghii	Rroxscaffold_3G00233770
rosa_rugosa	Rorug07G0229900.1 Rorug07G0230000.1
rosa_samantha	Rh7AG373400
rosa_wichuraiana	Rw7G031700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	478, 2160
AccB1I	GGYRCC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	1486
AccII	CGCG	1 cut(s)	595
AclWI	GGATC	2 cut(s)	611, 2213
AcoI	YGGCCR	2 cut(s)	124, 1561
AcsI	RAATTY	2 cut(s)	1169, 2225
AcuI	CTGAAG	3 cut(s)	1217, 1520, 1523
AfaI	GTAC	9 cut(s)	47, 236, 407, 413, 903, 971, 984, 1765, 1930
AfiI	CCNNNNNNNGG	4 cut(s)	292, 464, 1262, 1836
AflII	CTTAAG	1 cut(s)	2216
AflIII	ACRYGT	1 cut(s)	719
AhdI	GACNNNNNGTC	1 cut(s)	1831
AjiI	CACGTC	2 cut(s)	187, 694
AjnI	CCWGG	4 cut(s)	291, 312, 321, 442
Alw21I	GWGCWC	4 cut(s)	66, 546, 627, 1288
Alw26I	GTCTC	6 cut(s)	277, 374, 741, 1277, 1689, 2175
Alw44I	GTGCAC	1 cut(s)	1284
AlwI	GGATC	2 cut(s)	611, 2213
AlwNI	CAGNNNCTG	1 cut(s)	576
Ama87I	CYCGRG	2 cut(s)	353, 628
ApaLI	GTGCAC	1 cut(s)	1284
ApeKI	GCWGC	3 cut(s)	532, 1987, 2245
ApoI	RAATTY	2 cut(s)	1169, 2225
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
Asp700I	GAANNNNTTC	1 cut(s)	702
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	5 cut(s)	289, 295, 467, 886, 2167
AsuC2I	CCSGG	3 cut(s)	242, 287, 465
AsuHPI	GGTGA	3 cut(s)	418, 702, 1559
AvaI	CYCGRG	2 cut(s)	353, 628
BaeGI	GKGCMC	1 cut(s)	1288
BaeI	ACNNNNGTAYC	2 cut(s)	1755, 1788
BalI	TGGCCA	1 cut(s)	1563
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	3 cut(s)	66, 546, 627
BarI	GAAGNNNNNNTAC	2 cut(s)	942, 974
BauI	CACGAG	3 cut(s)	498, 515, 1446
BbsI	GAAGAC	2 cut(s)	1767, 2103
Bbv12I	GWGCWC	4 cut(s)	66, 546, 627, 1288
BbvI	GCAGC	3 cut(s)	544, 1999, 2257
BccI	CCATC	7 cut(s)	131, 224, 725, 1220, 1302, 1391, 1538
BceAI	ACGGC	4 cut(s)	24, 85, 95, 757
BciT130I	CCWGG	4 cut(s)	293, 314, 323, 444
BclI	TGATCA	1 cut(s)	990
BcnI	CCSGG	3 cut(s)	242, 287, 465
BcoDI	GTCTC	6 cut(s)	277, 374, 741, 1277, 1689, 2175
BfaI	CTAG	2 cut(s)	1413, 1922
BfmI	CTRYAG	2 cut(s)	959, 1896
BfrI	CTTAAG	1 cut(s)	2216
BfuAI	ACCTGC	2 cut(s)	478, 2160
BglII	AGATCT	1 cut(s)	812
BisI	GCNGC	8 cut(s)	193, 196, 211, 265, 350, 533, 1988, 2246
BlsI	GCNGC	8 cut(s)	194, 197, 212, 266, 351, 534, 1989, 2247
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	7 cut(s)	242, 287, 293, 314, 323, 444, 465
BmeRI	GACNNNNNGTC	1 cut(s)	1831
BmeT110I	CYCGRG	2 cut(s)	353, 628
BmgBI	CACGTC	2 cut(s)	187, 694
BmgT120I	GGNCC	5 cut(s)	289, 295, 467, 886, 2167
BmiI	GGNNCC	3 cut(s)	199, 363, 469
BmrFI	CCNGG	7 cut(s)	242, 287, 293, 314, 323, 444, 465
BmrI	ACTGGG	1 cut(s)	667
BmsI	GCATC	2 cut(s)	747, 2049
BmuI	ACTGGG	1 cut(s)	667
BpiI	GAAGAC	2 cut(s)	1767, 2103
BpmI	CTGGAG	3 cut(s)	296, 598, 2272
Bpu10I	CCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	2 cut(s)	1025, 1773
BpuMI	CCSGG	3 cut(s)	242, 287, 465
Bsa29I	ATCGAT	1 cut(s)	615
BsaI	GGTCTC	1 cut(s)	1689
BsaJI	CCNNGG	4 cut(s)	67, 291, 381, 1302
BsaWI	WCCGGW	1 cut(s)	1017
Bsc4I	CCNNNNNNNGG	4 cut(s)	292, 464, 1262, 1836
Bse118I	RCCGGY	1 cut(s)	888
Bse1I	ACTGG	4 cut(s)	175, 581, 673, 2289
Bse3DI	GCAATG	5 cut(s)	450, 482, 1130, 1879, 2272
BseBI	CCWGG	4 cut(s)	293, 314, 323, 444
BseCI	ATCGAT	1 cut(s)	615
BseDI	CCNNGG	4 cut(s)	67, 291, 381, 1302
BseGI	GGATG	3 cut(s)	318, 1041, 1075
BseLI	CCNNNNNNNGG	4 cut(s)	292, 464, 1262, 1836
BseMI	GCAATG	5 cut(s)	450, 482, 1130, 1879, 2272
BseMII	CTCAG	6 cut(s)	612, 1072, 1299, 1591, 1867, 2240
BseNI	ACTGG	4 cut(s)	175, 581, 673, 2289
BseRI	GAGGAG	2 cut(s)	44, 1221
BseSI	GKGCMC	1 cut(s)	1288
BseXI	GCAGC	3 cut(s)	544, 1999, 2257
BseYI	CCCAGC	1 cut(s)	1706
BsgI	GTGCAG	2 cut(s)	2006, 2067
Bsh1236I	CGCG	1 cut(s)	595
BshNI	GGYRCC	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	615
BsiHKAI	GWGCWC	4 cut(s)	66, 546, 627, 1288
BsiHKCI	CYCGRG	2 cut(s)	353, 628
BsiSI	CCGG	5 cut(s)	242, 287, 465, 889, 1018
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	4 cut(s)	292, 464, 1262, 1836
BsmAI	GTCTC	6 cut(s)	277, 374, 741, 1277, 1689, 2175
BsmBI	CGTCTC	3 cut(s)	277, 1277, 2175
BsmFI	GGGAC	1 cut(s)	292
BsmI	GAATGC	3 cut(s)	1272, 1375, 1595
Bso31I	GGTCTC	1 cut(s)	1689
BsoBI	CYCGRG	2 cut(s)	353, 628
Bsp1286I	GDGCHC	4 cut(s)	66, 546, 627, 1288
Bsp1407I	TGTACA	1 cut(s)	901
Bsp143I	GATC	7 cut(s)	387, 616, 812, 990, 1915, 2205, 2231
Bsp19I	CCATGG	1 cut(s)	1302
BspCNI	CTCAG	6 cut(s)	613, 1071, 1300, 1590, 1866, 2241
BspDI	ATCGAT	1 cut(s)	615
BspFNI	CGCG	1 cut(s)	595
BspHI	TCATGA	1 cut(s)	1105
BspLI	GGNNCC	3 cut(s)	199, 363, 469
BspMI	ACCTGC	2 cut(s)	478, 2160
BspPI	GGATC	2 cut(s)	611, 2213
BspT107I	GGYRCC	1 cut(s)	197
BspTI	CTTAAG	1 cut(s)	2216
BspTNI	GGTCTC	1 cut(s)	1689
BsrDI	GCAATG	5 cut(s)	450, 482, 1130, 1879, 2272
BsrFI	RCCGGY	1 cut(s)	888
BsrGI	TGTACA	1 cut(s)	901
BsrI	ACTGG	4 cut(s)	175, 581, 673, 2289
BssAI	RCCGGY	1 cut(s)	888
BssECI	CCNNGG	4 cut(s)	67, 291, 381, 1302
BssMI	GATC	7 cut(s)	387, 616, 812, 990, 1915, 2205, 2231
BssSI	CACGAG	3 cut(s)	498, 515, 1446
BssT1I	CCWWGG	2 cut(s)	381, 1302
Bst2BI	CACGAG	3 cut(s)	498, 515, 1446
Bst2UI	CCWGG	4 cut(s)	293, 314, 323, 444
Bst4CI	ACNGT	4 cut(s)	637, 897, 1150, 1756
Bst6I	CTCTTC	4 cut(s)	377, 775, 1499, 1692
BstAFI	CTTAAG	1 cut(s)	2216
BstAUI	TGTACA	1 cut(s)	901
BstC8I	GCNNGC	6 cut(s)	522, 682, 868, 1911, 2082, 2171
BstDEI	CTNAG	9 cut(s)	621, 871, 935, 1058, 1308, 1577, 1853, 2090, 2249
BstDSI	CCRYGG	2 cut(s)	67, 1302
BstENI	CCTNNNNNAGG	1 cut(s)	1260
BstF5I	GGATG	3 cut(s)	318, 1041, 1075
BstFNI	CGCG	1 cut(s)	595
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	7 cut(s)	390, 619, 815, 993, 1918, 2208, 2234
BstMAI	GTCTC	6 cut(s)	277, 374, 741, 1277, 1689, 2175
BstMBI	GATC	7 cut(s)	387, 616, 812, 990, 1915, 2205, 2231
BstMWI	GCNNNNNNNGC	3 cut(s)	509, 541, 1668
BstNI	CCWGG	4 cut(s)	293, 314, 323, 444
BstNSI	RCATGY	4 cut(s)	349, 723, 1377, 1632
BstSCI	CCNGG	7 cut(s)	240, 285, 291, 312, 321, 442, 463
BstSFI	CTRYAG	2 cut(s)	959, 1896
BstSLI	GKGCMC	1 cut(s)	1288
BstUI	CGCG	1 cut(s)	595
BstV1I	GCAGC	3 cut(s)	544, 1999, 2257
BstV2I	GAAGAC	2 cut(s)	1767, 2103
BstX2I	RGATCY	1 cut(s)	812
BstXI	CCANNNNNNTGG	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	812
Bsu15I	ATCGAT	1 cut(s)	615
BsuTUI	ATCGAT	1 cut(s)	615
BtgI	CCRYGG	2 cut(s)	67, 1302
BtgZI	GCGATG	1 cut(s)	1239
BtrI	CACGTC	2 cut(s)	187, 694
BtsCI	GGATG	3 cut(s)	318, 1041, 1075
BtsI	GCAGTG	2 cut(s)	41, 577
BtsIMutI	CAGTG	5 cut(s)	41, 577, 893, 986, 1752
BveI	ACCTGC	2 cut(s)	478, 2160
Cac8I	GCNNGC	6 cut(s)	522, 682, 868, 1911, 2082, 2171
CaiI	CAGNNNCTG	1 cut(s)	576
CciI	TCATGA	1 cut(s)	1105
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	888
Cfr13I	GGNCC	5 cut(s)	289, 295, 467, 886, 2167
ClaI	ATCGAT	1 cut(s)	615
CseI	GACGC	3 cut(s)	110, 1259, 2271
Csp6I	GTAC	9 cut(s)	46, 235, 406, 412, 902, 970, 983, 1764, 1929
CviQI	GTAC	9 cut(s)	46, 235, 406, 412, 902, 970, 983, 1764, 1929
DdeI	CTNAG	9 cut(s)	621, 871, 935, 1058, 1308, 1577, 1853, 2090, 2249
DpnI	GATC	7 cut(s)	389, 618, 814, 992, 1917, 2207, 2233
DpnII	GATC	7 cut(s)	387, 616, 812, 990, 1915, 2205, 2231
DraI	TTTAAA	1 cut(s)	829
DriI	GACNNNNNGTC	1 cut(s)	1831
EaeI	YGGCCR	2 cut(s)	124, 1561
Eam1104I	CTCTTC	4 cut(s)	377, 775, 1499, 1692
Eam1105I	GACNNNNNGTC	1 cut(s)	1831
EarI	CTCTTC	4 cut(s)	377, 775, 1499, 1692
EciI	GGCGGA	1 cut(s)	367
Ecl136II	GAGCTC	3 cut(s)	64, 544, 625
Eco130I	CCWWGG	2 cut(s)	381, 1302
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	3 cut(s)	66, 546, 627
Eco31I	GGTCTC	1 cut(s)	1689
Eco32I	GATATC	1 cut(s)	2143
Eco53kI	GAGCTC	3 cut(s)	64, 544, 625
Eco57I	CTGAAG	3 cut(s)	1217, 1520, 1523
Eco88I	CYCGRG	2 cut(s)	353, 628
EcoICRI	GAGCTC	3 cut(s)	64, 544, 625
EcoNI	CCTNNNNNAGG	1 cut(s)	1260
EcoRII	CCWGG	4 cut(s)	291, 312, 321, 442
EcoRV	GATATC	1 cut(s)	2143
EcoT14I	CCWWGG	2 cut(s)	381, 1302
EcoT22I	ATGCAT	1 cut(s)	1375
EcoT38I	GRGCYC	3 cut(s)	66, 546, 627
ErhI	CCWWGG	2 cut(s)	381, 1302
Esp3I	CGTCTC	3 cut(s)	277, 1277, 2175
FaqI	GGGAC	1 cut(s)	292
FauI	CCCGC	2 cut(s)	115, 215
FbaI	TGATCA	1 cut(s)	990
FblI	GTMKAC	1 cut(s)	1486
Fnu4HI	GCNGC	8 cut(s)	193, 196, 211, 265, 350, 533, 1988, 2246
FokI	GGATG	3 cut(s)	305, 1048, 1082
FriOI	GRGCYC	3 cut(s)	66, 546, 627
Fsp4HI	GCNGC	8 cut(s)	193, 196, 211, 265, 350, 533, 1988, 2246
FspBI	CTAG	2 cut(s)	1413, 1922
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	8 cut(s)	193, 196, 211, 265, 350, 533, 1988, 2246
GsaI	CCCAGC	1 cut(s)	1710
GsuI	CTGGAG	3 cut(s)	296, 598, 2272
HapII	CCGG	5 cut(s)	242, 287, 465, 889, 1018
HgaI	GACGC	3 cut(s)	110, 1259, 2271
HhaI	GCGC	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HindIII	AAGCTT	2 cut(s)	868, 1247
HpaII	CCGG	5 cut(s)	242, 287, 465, 889, 1018
HphI	GGTGA	3 cut(s)	418, 702, 1559
Hpy166II	GTNNAC	5 cut(s)	808, 932, 1286, 1487, 1931
Hpy188I	TCNGA	8 cut(s)	277, 283, 691, 1503, 1539, 1963, 2231, 2284
Hpy8I	GTNNAC	5 cut(s)	808, 932, 1286, 1487, 1931
Hpy99I	CGWCG	4 cut(s)	104, 122, 125, 191
HpyAV	CCTTC	9 cut(s)	94, 106, 352, 1003, 1026, 1241, 1478, 1816, 1965
HpyCH4III	ACNGT	4 cut(s)	637, 897, 1150, 1756
HpyCH4IV	ACGT	5 cut(s)	186, 693, 1674, 1714, 2184
HpyF10VI	GCNNNNNNNGC	3 cut(s)	509, 541, 1668
HpyF3I	CTNAG	9 cut(s)	621, 871, 935, 1058, 1308, 1577, 1853, 2090, 2249
HpySE526I	ACGT	5 cut(s)	186, 693, 1674, 1714, 2184
HspAI	GCGC	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	990
Kzo9I	GATC	7 cut(s)	387, 616, 812, 990, 1915, 2205, 2231
LmnI	GCTCC	8 cut(s)	31, 69, 109, 361, 460, 466, 1208, 1957
Lsp1109I	GCAGC	3 cut(s)	544, 1999, 2257
LweI	GCATC	2 cut(s)	747, 2049
MaeI	CTAG	2 cut(s)	1413, 1922
MaeII	ACGT	5 cut(s)	186, 693, 1674, 1714, 2184
MaeIII	GTNAC	6 cut(s)	572, 708, 891, 1675, 1710, 1833
MalI	GATC	7 cut(s)	389, 618, 814, 992, 1917, 2207, 2233
MboI	GATC	7 cut(s)	387, 616, 812, 990, 1915, 2205, 2231
MflI	RGATCY	1 cut(s)	812
MhlI	GDGCHC	4 cut(s)	66, 546, 627, 1288
MlsI	TGGCCA	1 cut(s)	1563
MluCI	AATT	6 cut(s)	639, 881, 953, 1169, 1347, 2225
MluNI	TGGCCA	1 cut(s)	1563
MlyI	GAGTC	6 cut(s)	239, 272, 743, 1482, 1721, 2279
MmeI	TCCRAC	3 cut(s)	300, 306, 1306
Mox20I	TGGCCA	1 cut(s)	1563
Mph1103I	ATGCAT	1 cut(s)	1375
MroXI	GAANNNNTTC	1 cut(s)	702
MscI	TGGCCA	1 cut(s)	1563
MseI	TTAA	3 cut(s)	828, 2199, 2217
MslI	CAYNNNNRTG	1 cut(s)	722
Msp20I	TGGCCA	1 cut(s)	1563
MspA1I	CMGCKG	1 cut(s)	2248
MspCI	CTTAAG	1 cut(s)	2216
MspI	CCGG	5 cut(s)	242, 287, 465, 889, 1018
MspR9I	CCNGG	7 cut(s)	242, 287, 293, 314, 323, 444, 465
MssI	GTTTAAAC	1 cut(s)	829
Mva1269I	GAATGC	3 cut(s)	1272, 1375, 1595
MvaI	CCWGG	4 cut(s)	293, 314, 323, 444
MvnI	CGCG	1 cut(s)	595
MwoI	GCNNNNNNNGC	3 cut(s)	509, 541, 1668
NciI	CCSGG	3 cut(s)	242, 287, 465
NcoI	CCATGG	1 cut(s)	1302
NdeII	GATC	7 cut(s)	387, 616, 812, 990, 1915, 2205, 2231
NlaIV	GGNNCC	3 cut(s)	199, 363, 469
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	5 cut(s)	572, 708, 891, 1675, 1833
NsiI	ATGCAT	1 cut(s)	1375
NspI	RCATGY	4 cut(s)	349, 723, 1377, 1632
PaeR7I	CTCGAG	2 cut(s)	353, 628
PagI	TCATGA	1 cut(s)	1105
PceI	AGGCCT	1 cut(s)	53
PciI	ACATGT	1 cut(s)	719
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	3 cut(s)	1272, 1375, 1595
PdmI	GAANNNNTTC	1 cut(s)	702
PfeI	GAWTC	4 cut(s)	800, 1613, 1699, 1793
PfoI	TCCNGGA	1 cut(s)	312
PkrI	GCNGC	8 cut(s)	194, 197, 212, 266, 351, 534, 1989, 2247
PleI	GAGTC	6 cut(s)	239, 272, 743, 1482, 1721, 2279
PmeI	GTTTAAAC	1 cut(s)	829
PpsI	GAGTC	6 cut(s)	239, 272, 743, 1482, 1721, 2279
PscI	ACATGT	1 cut(s)	719
Psp124BI	GAGCTC	3 cut(s)	66, 546, 627
Psp6I	CCWGG	4 cut(s)	291, 312, 321, 442
PspFI	CCCAGC	1 cut(s)	1706
PspGI	CCWGG	4 cut(s)	291, 312, 321, 442
PspN4I	GGNNCC	3 cut(s)	199, 363, 469
PspPI	GGNCC	5 cut(s)	289, 295, 467, 886, 2167
PsrI	GAACNNNNNNTAC	2 cut(s)	1732, 1764
PstNI	CAGNNNCTG	1 cut(s)	576
PsuI	RGATCY	1 cut(s)	812
PvuII	CAGCTG	1 cut(s)	2248
RsaI	GTAC	9 cut(s)	47, 236, 407, 413, 903, 971, 984, 1765, 1930
RsaNI	GTAC	9 cut(s)	46, 235, 406, 412, 902, 970, 983, 1764, 1929
RseI	CAYNNNNRTG	1 cut(s)	722
SacI	GAGCTC	3 cut(s)	66, 546, 627
SaqAI	TTAA	3 cut(s)	828, 2199, 2217
SatI	GCNGC	8 cut(s)	193, 196, 211, 265, 350, 533, 1988, 2246
Sau3AI	GATC	7 cut(s)	387, 616, 812, 990, 1915, 2205, 2231
Sau96I	GGNCC	5 cut(s)	289, 295, 467, 886, 2167
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	6 cut(s)	239, 272, 743, 1482, 1721, 2279
ScrFI	CCNGG	7 cut(s)	242, 287, 293, 314, 323, 444, 465
SduI	GDGCHC	4 cut(s)	66, 546, 627, 1288
SfaNI	GCATC	2 cut(s)	747, 2049
SfcI	CTRYAG	2 cut(s)	959, 1896
Sfr274I	CTCGAG	2 cut(s)	353, 628
SlaI	CTCGAG	2 cut(s)	353, 628
SmiMI	CAYNNNNRTG	1 cut(s)	722
SmlI	CTYRAG	5 cut(s)	353, 628, 1004, 1788, 2216
SmoI	CTYRAG	5 cut(s)	353, 628, 1004, 1788, 2216
Sse9I	AATT	6 cut(s)	639, 881, 953, 1169, 1347, 2225
SseBI	AGGCCT	1 cut(s)	53
SspI	AATATT	2 cut(s)	2015, 2134
SspMI	CTAG	2 cut(s)	1413, 1922
SstI	GAGCTC	3 cut(s)	66, 546, 627
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	7 cut(s)	240, 285, 291, 312, 321, 442, 463
StyI	CCWWGG	2 cut(s)	381, 1302
TaaI	ACNGT	4 cut(s)	637, 897, 1150, 1756
TaiI	ACGT	5 cut(s)	189, 696, 1677, 1717, 2187
TaqI	TCGA	9 cut(s)	87, 99, 156, 354, 435, 615, 629, 657, 729
TasI	AATT	6 cut(s)	639, 881, 953, 1169, 1347, 2225
TatI	WGTACW	4 cut(s)	405, 411, 901, 1928
TauI	GCSGC	5 cut(s)	195, 198, 213, 267, 352
TfiI	GAWTC	4 cut(s)	800, 1613, 1699, 1793
Tru1I	TTAA	3 cut(s)	828, 2199, 2217
Tru9I	TTAA	3 cut(s)	828, 2199, 2217
TscAI	CASTG	5 cut(s)	41, 577, 900, 993, 1759
TseFI	GTSAC	5 cut(s)	572, 708, 891, 1675, 1833
TseI	GCWGC	3 cut(s)	532, 1987, 2245
Tsp45I	GTSAC	5 cut(s)	572, 708, 891, 1675, 1833
TspDTI	ATGAA	8 cut(s)	245, 1052, 1056, 1086, 1094, 1460, 1947, 1988
TspGWI	ACGGA	1 cut(s)	1218
TspRI	CASTG	5 cut(s)	41, 577, 900, 993, 1759
Vha464I	CTTAAG	1 cut(s)	2216
VneI	GTGCAC	1 cut(s)	1284
XagI	CCTNNNNNAGG	1 cut(s)	1260
XapI	RAATTY	2 cut(s)	1169, 2225
XceI	RCATGY	4 cut(s)	349, 723, 1377, 1632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XhoI	CTCGAG	2 cut(s)	353, 628
XmiI	GTMKAC	1 cut(s)	1486
XmnI	GAANNNNTTC	1 cut(s)	702
XspI	CTAG	2 cut(s)	1413, 1922
ZrmI	AGTACT	1 cut(s)	413
Zsp2I	ATGCAT	1 cut(s)	1375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.