Rmu_sc0000259.1_g000029

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000259.1
OG0023034
Physical Location & Seq
Reverse (-)
107825 .. 108163
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000259.1_g000029.1.cds

Sequence Viewer

Length: 339 bp
atgagtaacctaaacaaattggactttgcttcattgggaacaactggctttggatatcacaagtgggttcgtgatgtctgccagcatctcaaggcccaaggaatcctagatacgattcttgagcctagccaggatgtgctaactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggcaaataagaagaaagccatcatcctaatgactcgtcatatggatgattcgctccagtacaagtatatgaacgaagaagaccccagaaggctgtgggtctcactcgaagaatgctttggcaaggtccgtgactccctgctcctgacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

112

Amino Acids

12.83

Weight (kDa)

5.88

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023034)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000259.1_g000029 Rmu_sc0001359.1_g000009 Rmu_sc0006126.1_g000003 Rmu_sc0006184.1_g000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 248
AjnI CCWGG 1 cut(s) 129
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 2 cut(s) 155, 161
AluI AGCT 2 cut(s) 155, 161
Alw26I GTCTC 1 cut(s) 292
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 179
AspS9I GGNCC 2 cut(s) 94, 313
AvaII GGWCC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 191
BccI CCATC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 3 cut(s) 107, 126, 337
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 2 cut(s) 94, 313
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 3 cut(s) 74, 140, 141
BsaI GGTCTC 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 97
Bse1I ACTGG 2 cut(s) 49, 244
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 3 cut(s) 139, 210, 238
BseNI ACTGG 2 cut(s) 49, 244
BseXI GCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 292
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 292
BspANI GGCC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 292
BsrI ACTGG 2 cut(s) 49, 244
BssECI CCNNGG 1 cut(s) 97
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 83, 153
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 3 cut(s) 139, 210, 238
BstMAI GTCTC 1 cut(s) 292
BstMWI GCNNNNNNNGC 3 cut(s) 167, 176, 188
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 273
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 3 cut(s) 139, 210, 238
Cac8I GCNNGC 2 cut(s) 83, 153
Cfr13I GGNCC 2 cut(s) 94, 313
Csp6I GTAC 1 cut(s) 247
CviJI RGCY 9 cut(s) 48, 95, 124, 129, 155, 161, 182, 206, 280
CviKI_1 RGCY 9 cut(s) 48, 95, 124, 129, 155, 161, 182, 206, 280
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 97
Eco31I GGTCTC 1 cut(s) 292
Eco32I GATATC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 129
EcoRV GATATC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaiI YATR 4 cut(s) 228, 230, 255, 257
FauNDI CATATG 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 3 cut(s) 146, 197, 245
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 3 cut(s) 107, 126, 337
GluI GCNGC 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 1 cut(s) 95
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 5 cut(s) 102, 115, 220, 236, 320
Hpy188III TCNNGA 3 cut(s) 71, 119, 331
HpyAV CCTTC 1 cut(s) 270
HpyCH4III ACNGT 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 176, 188
HpyF3I CTNAG 1 cut(s) 184
LmnI GCTCC 2 cut(s) 246, 333
LpnPI CCDG 6 cut(s) 30, 95, 116, 143, 257, 286
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 94
MaeI CTAG 3 cut(s) 107, 126, 337
MaeIII GTNAC 2 cut(s) 5, 317
MboII GAAGA 4 cut(s) 211, 275, 278, 308
MluCI AATT 1 cut(s) 17
MlyI GAGTC 2 cut(s) 214, 314
MnlI CCTC 1 cut(s) 181
MslI CAYNNNNRTG 2 cut(s) 215, 231
MspR9I CCNGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 305
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 3 cut(s) 167, 176, 188
NdeI CATATG 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 317
PctI GAATGC 1 cut(s) 305
PfeI GAWTC 3 cut(s) 102, 115, 236
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 2 cut(s) 214, 314
PpsI GAGTC 2 cut(s) 214, 314
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspPI GGNCC 2 cut(s) 94, 313
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 215, 231
SatI GCNGC 1 cut(s) 180
Sau96I GGNCC 2 cut(s) 94, 313
SchI GAGTC 2 cut(s) 214, 314
ScrFI CCNGG 1 cut(s) 131
SetI ASST 5 cut(s) 12, 157, 163, 315, 338
SfaNI GCATC 1 cut(s) 94
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 2 cut(s) 215, 231
SmlI CTYRAG 3 cut(s) 89, 119, 156
SmoI CTYRAG 3 cut(s) 89, 119, 156
Sse9I AATT 1 cut(s) 17
SspMI CTAG 3 cut(s) 107, 126, 337
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 294
TasI AATT 1 cut(s) 17
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 3 cut(s) 102, 115, 236
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 21, 272
TspGWI ACGGA 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 313
XspI CTAG 3 cut(s) 107, 126, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.