Rmu_sc0001359.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001359.1
OG0023034
Physical Location & Seq
Reverse (-)
57201 .. 60617
3417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001359.1_g000009.1.cds

Sequence Viewer

Length: 1212 bp
atggagcgggtcaatattgagatagtgggttcagggcatcaatatgtgcttgggttaaaaagggaaaaagtttccaggggcgtgacagatgaggaagtggaagaccctatgcatgccttagtgctatgtaatgcagccaccaaggccatttggaagaatataaaccaaatggtgtgggatggcaccttcaaacgggctcaggaaattattccactaactatggctacctccgcctcacaccttgaagcccccgatcccaagagtccagaaccggcggcgaatcctctagaaccgtccgtcgaaaaatctaaactctggttagcctcacctatacccctgtgcctcatctgcgcatgccttttcgccccgcccctgacggctggcctcgctaccccttgcctctgttacccttgcctgccacgcatgcaccctcgtagcctccgcgcacgcctcagtacccagcgcagcaccctcacagccccgcacccctatgcatcccagattagtaatgtgaacaagttggactttgctccattggagacaacaggctctggatatcacaaatgggttcgtgatgtctgccagcatcctaaggaagctgctgctttagaagcaaatagagctaatttggaggcaaacaaggcaaaggccatcatcctcatgactcgttacatggatgacttgctccagaatgagtacctgaatgaaaaagaccctagaaagctgtgggtcgcactcgaaaagcgatttaggaactttcgtgactccctgcttactaatttagaagtgaaatggcacaacctctgcttctatgatttcaagtctgttctagactacaactcagaagactacacatcaactgagaagcacgacaacatcattgtggagaactataactctagacacgtgggaaccaagtctattccagagtctaattatagtcgcgccccaagggagggtgccaggagtgaaaccctaacactagggataattctggatgtcctagtctatattctcaccctaaagtggaaggtaactgccaagacaagcggacacagaaccgtggtggtcaacaaatttacaaatgagtacaaggtgtatcgtgaagcaagggaagcaaattacatggagcaagaagatcaagatggtgatctcaatctaagggtggaacatttcaaatgccaagatcaagaagctaacaattttgtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

403

Amino Acids

45.9

Weight (kDa)

6.87

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023034)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000259.1_g000029 Rmu_sc0001359.1_g000009 Rmu_sc0006126.1_g000003 Rmu_sc0006184.1_g000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 352
AccB1I GGYRCC 2 cut(s) 182, 959
AccBSI CCGCTC 1 cut(s) 7
AccII CGCG 2 cut(s) 444, 945
AciI CCGC 7 cut(s) 7, 231, 275, 368, 442, 482, 1050
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 1076
AcvI CACGTG 1 cut(s) 907
AfaI GTAC 3 cut(s) 457, 698, 1091
AfiI CCNNNNNNNGG 4 cut(s) 192, 955, 956, 1026
AflIII ACRYGT 1 cut(s) 904
AgsI TTSAA 4 cut(s) 190, 245, 820, 1177
AjnI CCWGG 2 cut(s) 74, 962
AluBI AGCT 4 cut(s) 599, 623, 724, 1196
AluI AGCT 4 cut(s) 599, 623, 724, 1196
Alw26I GTCTC 1 cut(s) 533
AlwI GGATC 1 cut(s) 248
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 3 cut(s) 144, 382, 648
ApeKI GCWGC 4 cut(s) 134, 465, 599, 602
ApoI RAATTY 1 cut(s) 1076
Asp700I GAANNNNTTC 1 cut(s) 207
AspLEI GCGC 4 cut(s) 353, 446, 465, 947
AsuHPI GGTGA 3 cut(s) 318, 1009, 1160
AxyI CCTNAGG 1 cut(s) 591
BanI GGYRCC 2 cut(s) 182, 959
BanII GRGCYC 1 cut(s) 199
BbrPI CACGTG 1 cut(s) 907
BbsI GAAGAC 2 cut(s) 108, 852
BbvI GCAGC 4 cut(s) 146, 477, 586, 589
BccI CCATC 3 cut(s) 173, 659, 1139
BceAI ACGGC 1 cut(s) 393
BciT130I CCWGG 2 cut(s) 76, 964
BcoDI GTCTC 1 cut(s) 533
BfaI CTAG 6 cut(s) 287, 717, 830, 900, 983, 1004
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 5 cut(s) 135, 276, 466, 600, 603
BlsI GCNGC 5 cut(s) 136, 277, 467, 601, 604
Bme1390I CCNGG 2 cut(s) 76, 964
BmiI GGNNCC 3 cut(s) 184, 913, 961
BmrFI CCNGG 2 cut(s) 76, 964
BmsI GCATC 3 cut(s) 46, 503, 595
BpiI GAAGAC 2 cut(s) 108, 852
BpmI CTGGAG 1 cut(s) 671
Bpu10I CCTNAGC 1 cut(s) 198
BsaAI YACGTR 1 cut(s) 907
BsaBI GATNNNNATC 2 cut(s) 1149, 1155
BsaJI CCNNGG 4 cut(s) 75, 141, 950, 1062
Bsc4I CCNNNNNNNGG 4 cut(s) 192, 955, 956, 1026
Bse118I RCCGGY 1 cut(s) 271
Bse21I CCTNAGG 1 cut(s) 591
Bse8I GATNNNNATC 2 cut(s) 1149, 1155
BseBI CCWGG 2 cut(s) 76, 964
BseDI CCNNGG 4 cut(s) 75, 141, 950, 1062
BseGI GGATG 6 cut(s) 184, 494, 586, 654, 682, 1003
BseJI GATNNNNATC 2 cut(s) 1149, 1155
BseLI CCNNNNNNNGG 4 cut(s) 192, 955, 956, 1026
BseMII CTCAG 4 cut(s) 212, 466, 852, 855
BseXI GCAGC 4 cut(s) 146, 477, 586, 589
BseYI CCCAGC 1 cut(s) 459
Bsh1236I CGCG 2 cut(s) 444, 945
BshFI GGCC 3 cut(s) 146, 384, 650
BshNI GGYRCC 2 cut(s) 182, 959
BsiSI CCGG 1 cut(s) 272
BslI CCNNNNNNNGG 4 cut(s) 192, 955, 956, 1026
BsmAI GTCTC 1 cut(s) 533
BsnI GGCC 3 cut(s) 146, 384, 650
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 4 cut(s) 253, 1138, 1150, 1186
BspACI CCGC 7 cut(s) 7, 231, 275, 368, 442, 482, 1050
BspANI GGCC 3 cut(s) 146, 384, 650
BspCNI CTCAG 4 cut(s) 211, 465, 853, 854
BspFNI CGCG 2 cut(s) 444, 945
BspHI TCATGA 1 cut(s) 660
BspLI GGNNCC 3 cut(s) 184, 913, 961
BspPI GGATC 1 cut(s) 248
BspT107I GGYRCC 2 cut(s) 182, 959
BsrBI CCGCTC 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 271
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 4 cut(s) 75, 141, 950, 1062
BssMI GATC 4 cut(s) 253, 1138, 1150, 1186
BssT1I CCWWGG 2 cut(s) 141, 950
Bst2UI CCWGG 2 cut(s) 76, 964
Bst4CI ACNGT 2 cut(s) 294, 1063
BstBAI YACGTR 1 cut(s) 907
BstC8I GCNNGC 7 cut(s) 114, 355, 382, 416, 425, 448, 584
BstDEI CTNAG 7 cut(s) 118, 198, 452, 591, 841, 861, 1160
BstDSI CCRYGG 1 cut(s) 1062
BstF5I GGATG 6 cut(s) 184, 494, 586, 654, 682, 1003
BstFNI CGCG 2 cut(s) 444, 945
BstHHI GCGC 4 cut(s) 353, 446, 465, 947
BstKTI GATC 4 cut(s) 256, 1141, 1153, 1189
BstMAI GTCTC 1 cut(s) 533
BstMBI GATC 4 cut(s) 253, 1138, 1150, 1186
BstNI CCWGG 2 cut(s) 76, 964
BstNSI RCATGY 3 cut(s) 116, 357, 427
BstSCI CCNGG 2 cut(s) 74, 962
BstUI CGCG 2 cut(s) 444, 945
BstV1I GCAGC 4 cut(s) 146, 477, 586, 589
BstV2I GAAGAC 2 cut(s) 108, 852
Bsu36I CCTNAGG 1 cut(s) 591
BsuRI GGCC 3 cut(s) 146, 384, 650
BtgI CCRYGG 1 cut(s) 1062
BtsCI GGATG 6 cut(s) 184, 494, 586, 654, 682, 1003
Cac8I GCNNGC 7 cut(s) 114, 355, 382, 416, 425, 448, 584
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 1 cut(s) 660
CfoI GCGC 4 cut(s) 353, 446, 465, 947
Cfr10I RCCGGY 1 cut(s) 271
Csp6I GTAC 3 cut(s) 456, 697, 1090
CspCI CAANNNNNGTGG 2 cut(s) 155, 190
CviAII CATG 6 cut(s) 113, 354, 424, 661, 673, 1126
CviQI GTAC 3 cut(s) 456, 697, 1090
DdeI CTNAG 7 cut(s) 118, 198, 452, 591, 841, 861, 1160
DpnI GATC 4 cut(s) 255, 1140, 1152, 1188
DpnII GATC 4 cut(s) 253, 1138, 1150, 1186
EciI GGCGGA 1 cut(s) 220
Eco130I CCWWGG 2 cut(s) 141, 950
Eco24I GRGCYC 1 cut(s) 199
Eco32I GATATC 1 cut(s) 557
Eco72I CACGTG 1 cut(s) 907
Eco81I CCTNAGG 1 cut(s) 591
EcoRII CCWGG 2 cut(s) 74, 962
EcoRV GATATC 1 cut(s) 557
EcoT14I CCWWGG 2 cut(s) 141, 950
EcoT22I ATGCAT 2 cut(s) 114, 496
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 2 cut(s) 141, 950
FaeI CATG 6 cut(s) 116, 357, 427, 664, 676, 1129
FalI AAGNNNNNCTT 2 cut(s) 509, 541
FatI CATG 6 cut(s) 112, 353, 423, 660, 672, 1125
FauI CCCGC 2 cut(s) 375, 489
Fnu4HI GCNGC 5 cut(s) 135, 276, 466, 600, 603
FokI GGATG 6 cut(s) 191, 481, 573, 641, 689, 1010
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 5 cut(s) 135, 276, 466, 600, 603
FspBI CTAG 6 cut(s) 287, 717, 830, 900, 983, 1004
FspI TGCGCA 1 cut(s) 352
GlaI GCGC 4 cut(s) 352, 445, 464, 946
GluI GCNGC 5 cut(s) 135, 276, 466, 600, 603
GsaI CCCAGC 1 cut(s) 463
GsuI CTGGAG 1 cut(s) 671
HaeIII GGCC 3 cut(s) 146, 384, 650
HapII CCGG 1 cut(s) 272
HhaI GCGC 4 cut(s) 353, 446, 465, 947
Hin1II CATG 6 cut(s) 116, 357, 427, 664, 676, 1129
Hin6I GCGC 4 cut(s) 351, 444, 463, 945
HinP1I GCGC 4 cut(s) 351, 444, 463, 945
HincII GTYRAC 1 cut(s) 1072
HindII GTYRAC 1 cut(s) 1072
HinfI GANTC 5 cut(s) 262, 280, 664, 764, 929
HpaII CCGG 1 cut(s) 272
HphI GGTGA 3 cut(s) 318, 1009, 1160
Hpy166II GTNNAC 2 cut(s) 514, 1072
Hpy188I TCNGA 1 cut(s) 844
Hpy8I GTNNAC 2 cut(s) 514, 1072
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 2 cut(s) 196, 1024
HpyCH4III ACNGT 2 cut(s) 294, 1063
HpyCH4IV ACGT 1 cut(s) 906
HpyCH4V TGCA 4 cut(s) 112, 134, 427, 494
HpyF3I CTNAG 7 cut(s) 118, 198, 452, 591, 841, 861, 1160
HpySE526I ACGT 1 cut(s) 906
Hsp92II CATG 6 cut(s) 116, 357, 427, 664, 676, 1129
HspAI GCGC 4 cut(s) 351, 444, 463, 945
Kzo9I GATC 4 cut(s) 253, 1138, 1150, 1186
LmnI GCTCC 4 cut(s) 4, 535, 690, 1129
Lsp1109I GCAGC 4 cut(s) 146, 477, 586, 589
LweI GCATC 3 cut(s) 46, 503, 595
MaeI CTAG 6 cut(s) 287, 717, 830, 900, 983, 1004
MaeII ACGT 1 cut(s) 906
MaeIII GTNAC 5 cut(s) 82, 404, 668, 761, 1033
MalI GATC 4 cut(s) 255, 1140, 1152, 1188
MbiI CCGCTC 1 cut(s) 7
MboI GATC 4 cut(s) 253, 1138, 1150, 1186
MboII GAAGA 4 cut(s) 113, 166, 857, 1148
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 8 cut(s) 204, 625, 778, 934, 990, 1076, 1120, 1201
MlyI GAGTC 4 cut(s) 271, 658, 758, 938
MmeI TCCRAC 1 cut(s) 501
Mph1103I ATGCAT 2 cut(s) 114, 496
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 1 cut(s) 56
MslI CAYNNNNRTG 4 cut(s) 42, 489, 659, 881
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 2 cut(s) 76, 964
MvaI CCWGG 2 cut(s) 76, 964
MvnI CGCG 2 cut(s) 444, 945
NdeII GATC 4 cut(s) 253, 1138, 1150, 1186
NlaIII CATG 6 cut(s) 116, 357, 427, 664, 676, 1129
NlaIV GGNNCC 3 cut(s) 184, 913, 961
NmuCI GTSAC 2 cut(s) 82, 761
NsbI TGCGCA 1 cut(s) 352
NsiI ATGCAT 2 cut(s) 114, 496
NspI RCATGY 3 cut(s) 116, 357, 427
PaeI GCATGC 3 cut(s) 116, 357, 427
PagI TCATGA 1 cut(s) 660
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 280
PkrI GCNGC 5 cut(s) 136, 277, 467, 601, 604
PleI GAGTC 4 cut(s) 270, 658, 758, 937
PmaCI CACGTG 1 cut(s) 907
PmlI CACGTG 1 cut(s) 907
PpsI GAGTC 4 cut(s) 270, 658, 758, 937
Ppu21I YACGTR 1 cut(s) 907
Psp6I CCWGG 2 cut(s) 74, 962
PspCI CACGTG 1 cut(s) 907
PspFI CCCAGC 1 cut(s) 459
PspGI CCWGG 2 cut(s) 74, 962
PspN4I GGNNCC 3 cut(s) 184, 913, 961
PstNI CAGNNNCTG 1 cut(s) 551
RsaI GTAC 3 cut(s) 457, 698, 1091
RsaNI GTAC 3 cut(s) 456, 697, 1090
RseI CAYNNNNRTG 4 cut(s) 42, 489, 659, 881
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 5 cut(s) 135, 276, 466, 600, 603
Sau3AI GATC 4 cut(s) 253, 1138, 1150, 1186
SchI GAGTC 4 cut(s) 271, 658, 758, 938
ScrFI CCNGG 2 cut(s) 76, 964
SduI GDGCHC 1 cut(s) 199
SfaNI GCATC 3 cut(s) 46, 503, 595
SmiMI CAYNNNNRTG 4 cut(s) 42, 489, 659, 881
SphI GCATGC 3 cut(s) 116, 357, 427
Sse9I AATT 8 cut(s) 204, 625, 778, 934, 990, 1076, 1120, 1201
SsiI CCGC 7 cut(s) 7, 231, 275, 368, 442, 482, 1050
SspI AATATT 1 cut(s) 16
SspMI CTAG 6 cut(s) 287, 717, 830, 900, 983, 1004
StyD4I CCNGG 2 cut(s) 74, 962
StyI CCWWGG 2 cut(s) 141, 950
TaaI ACNGT 2 cut(s) 294, 1063
TaiI ACGT 1 cut(s) 909
TaqI TCGA 2 cut(s) 300, 738
TasI AATT 8 cut(s) 204, 625, 778, 934, 990, 1076, 1120, 1201
TatI WGTACW 1 cut(s) 1089
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TseFI GTSAC 2 cut(s) 82, 761
TseI GCWGC 4 cut(s) 134, 465, 599, 602
Tsp45I GTSAC 2 cut(s) 82, 761
TspDTI ATGAA 1 cut(s) 720
TspGWI ACGGA 1 cut(s) 286
XapI RAATTY 1 cut(s) 1076
XbaI TCTAGA 3 cut(s) 286, 829, 899
XceI RCATGY 3 cut(s) 116, 357, 427
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 6 cut(s) 287, 717, 830, 900, 983, 1004
Zsp2I ATGCAT 2 cut(s) 114, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.