Rmu_sc0006184.1_g000020

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006184.1
OG0023034
Physical Location & Seq
Reverse (-)
127803 .. 130357
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006184.1_g000020.1.cds

Sequence Viewer

Length: 522 bp
atggagcgggtcaatattgagatagtgggttcagggcttcaatatgtacttgggttaaaaagggaaaaagtttccaggggcgtgacagataaggaagtggaagaccctatgcatgcctcagtggctgcctcgagcctctggttagccttgccatcagagcctgcagaaacttctacccaccaccagtcaatttcaaataaccacaagccggtgtccggccaacatcgacctccggtgaactttttcgaccagttttccggcgaccccaaaaacaggattagtaatgtgaacaagttggactttgctccattggagacaacaggctctggatatcacaaatgggttcgtgatgtctgccagcatcttaaggaagctgccgctttagaagcaaatagagctaatttggaggcaaacaaggcaaaggccatcatcctcatgactcgttacatggatgacttgctccagaatgagtacctgaatgaagaagaccctagaaagctgtgggtcgcactcgaaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

173

Amino Acids

19.49

Weight (kDa)

6.16

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023034)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000259.1_g000029 Rmu_sc0001359.1_g000009 Rmu_sc0006126.1_g000003 Rmu_sc0006184.1_g000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 7
AciI CCGC 2 cut(s) 7, 378
AcoI YGGCCR 1 cut(s) 217
AfaI GTAC 2 cut(s) 48, 473
AfiI CCNNNNNNNGG 3 cut(s) 208, 215, 273
AflII CTTAAG 1 cut(s) 365
AgsI TTSAA 2 cut(s) 41, 195
AjnI CCWGG 1 cut(s) 74
AluBI AGCT 3 cut(s) 374, 398, 499
AluI AGCT 3 cut(s) 374, 398, 499
Alw26I GTCTC 1 cut(s) 308
AlwNI CAGNNNCTG 3 cut(s) 125, 161, 326
Ama87I CYCGRG 1 cut(s) 130
AoxI GGCC 2 cut(s) 217, 423
ApeKI GCWGC 2 cut(s) 125, 374
Asp700I GAANNNNTTC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 130
BbsI GAAGAC 2 cut(s) 108, 492
BbvI GCAGC 2 cut(s) 112, 361
BccI CCATC 2 cut(s) 160, 434
BciT130I CCWGG 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 1 cut(s) 162
BfrI CTTAAG 1 cut(s) 365
BglI GCCNNNNNGGC 1 cut(s) 122
BisI GCNGC 3 cut(s) 126, 375, 378
BlsI GCNGC 3 cut(s) 127, 376, 379
Bme1390I CCNGG 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 370
BpiI GAAGAC 2 cut(s) 108, 492
BpmI CTGGAG 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 215, 273
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 2 cut(s) 184, 250
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 429, 457
BseLI CCNNNNNNNGG 3 cut(s) 208, 215, 273
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 2 cut(s) 184, 250
BseXI GCAGC 2 cut(s) 112, 361
BshFI GGCC 2 cut(s) 219, 425
BsiHKCI CYCGRG 1 cut(s) 130
BsiSI CCGG 4 cut(s) 209, 216, 233, 258
BslI CCNNNNNNNGG 3 cut(s) 208, 215, 273
BsmAI GTCTC 1 cut(s) 308
BsnI GGCC 2 cut(s) 219, 425
BsoBI CYCGRG 1 cut(s) 130
BspACI CCGC 2 cut(s) 7, 378
BspANI GGCC 2 cut(s) 219, 425
BspCNI CTCAG 1 cut(s) 131
BspHI TCATGA 1 cut(s) 435
BspMAI CTGCAG 1 cut(s) 166
BspTI CTTAAG 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 208
BsrI ACTGG 2 cut(s) 184, 250
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 76
BstAFI CTTAAG 1 cut(s) 365
BstC8I GCNNGC 3 cut(s) 114, 162, 359
BstDEI CTNAG 1 cut(s) 118
BstF5I GGATG 2 cut(s) 429, 457
BstMAI GTCTC 1 cut(s) 308
BstMWI GCNNNNNNNGC 5 cut(s) 122, 157, 386, 395, 416
BstNI CCWGG 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 112, 361
BstV2I GAAGAC 2 cut(s) 108, 492
BsuRI GGCC 2 cut(s) 219, 425
BtsCI GGATG 2 cut(s) 429, 457
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 3 cut(s) 114, 162, 359
CaiI CAGNNNCTG 3 cut(s) 125, 161, 326
CciI TCATGA 1 cut(s) 435
Cfr10I RCCGGY 1 cut(s) 208
Csp6I GTAC 2 cut(s) 47, 472
CviAII CATG 3 cut(s) 113, 436, 448
CviQI GTAC 2 cut(s) 47, 472
DdeI CTNAG 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 217
Eco32I GATATC 1 cut(s) 332
Eco88I CYCGRG 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 74
EcoRV GATATC 1 cut(s) 332
EcoT22I ATGCAT 1 cut(s) 114
FaeI CATG 3 cut(s) 116, 439, 451
FaiI YATR 5 cut(s) 45, 110, 114, 437, 449
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FatI CATG 3 cut(s) 112, 435, 447
Fnu4HI GCNGC 3 cut(s) 126, 375, 378
FokI GGATG 2 cut(s) 416, 464
Fsp4HI GCNGC 3 cut(s) 126, 375, 378
FspBI CTAG 1 cut(s) 492
GluI GCNGC 3 cut(s) 126, 375, 378
GsuI CTGGAG 1 cut(s) 446
HaeIII GGCC 2 cut(s) 219, 425
HapII CCGG 4 cut(s) 209, 216, 233, 258
Hin1II CATG 3 cut(s) 116, 439, 451
HinfI GANTC 1 cut(s) 439
HpaII CCGG 4 cut(s) 209, 216, 233, 258
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 238, 289
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 4 cut(s) 327, 347, 436, 463
Hpy8I GTNNAC 2 cut(s) 238, 289
HpyCH4V TGCA 2 cut(s) 112, 164
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 157, 386, 395, 416
HpyF3I CTNAG 1 cut(s) 118
Hsp92II CATG 3 cut(s) 116, 439, 451
LmnI GCTCC 3 cut(s) 4, 310, 465
Lsp1109I GCAGC 2 cut(s) 112, 361
LweI GCATC 1 cut(s) 370
MaeI CTAG 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 82, 443
MbiI CCGCTC 1 cut(s) 7
MboII GAAGA 3 cut(s) 113, 494, 497
MluCI AATT 2 cut(s) 189, 400
MlyI GAGTC 1 cut(s) 433
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 6 cut(s) 127, 139, 146, 240, 400, 443
Mph1103I ATGCAT 1 cut(s) 114
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 2 cut(s) 56, 366
MslI CAYNNNNRTG 1 cut(s) 434
MspCI CTTAAG 1 cut(s) 365
MspI CCGG 4 cut(s) 209, 216, 233, 258
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 5 cut(s) 122, 157, 386, 395, 416
NlaIII CATG 3 cut(s) 116, 439, 451
NmuCI GTSAC 1 cut(s) 82
NsiI ATGCAT 1 cut(s) 114
NspI RCATGY 1 cut(s) 116
PaeI GCATGC 1 cut(s) 116
PaeR7I CTCGAG 1 cut(s) 130
PagI TCATGA 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 242
PkrI GCNGC 3 cut(s) 127, 376, 379
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspXI VCTCGAGB 1 cut(s) 130
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 3 cut(s) 125, 161, 326
RsaI GTAC 2 cut(s) 48, 473
RsaNI GTAC 2 cut(s) 47, 472
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 2 cut(s) 56, 366
SatI GCNGC 3 cut(s) 126, 375, 378
SchI GAGTC 1 cut(s) 433
ScrFI CCNGG 1 cut(s) 76
SetI ASST 5 cut(s) 232, 376, 400, 477, 501
SfaNI GCATC 1 cut(s) 370
SfcI CTRYAG 1 cut(s) 162
Sfr274I CTCGAG 1 cut(s) 130
SlaI CTCGAG 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 2 cut(s) 130, 365
SmoI CTYRAG 2 cut(s) 130, 365
SphI GCATGC 1 cut(s) 116
Sse9I AATT 2 cut(s) 189, 400
SsiI CCGC 2 cut(s) 7, 378
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 492
StyD4I CCNGG 1 cut(s) 74
TaqI TCGA 4 cut(s) 131, 226, 246, 513
TasI AATT 2 cut(s) 189, 400
TatI WGTACW 1 cut(s) 46
TauI GCSGC 1 cut(s) 380
Tru1I TTAA 2 cut(s) 56, 366
Tru9I TTAA 2 cut(s) 56, 366
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 2 cut(s) 125, 374
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 495
TspRI CASTG 1 cut(s) 126
Vha464I CTTAAG 1 cut(s) 365
XceI RCATGY 1 cut(s) 116
XhoI CTCGAG 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 1 cut(s) 492
Zsp2I ATGCAT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.