Rmu_sc0006126.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006126.1
OG0023034
Physical Location & Seq
Reverse (-)
5984 .. 6322
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006126.1_g000003.1.cds

Sequence Viewer

Length: 339 bp
atgagtaacctgaacaaattggactttgctccattgggaacaactggcactggatatcacaggtgggttcgtgatatctgccagcatctcaaggctataggaatcttggatatgactctcgagcctagccaggacgtgataactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggcaaataaggcgaaagccatcatcctaataactcgtcatatggatgattcgctccagtacgagtatatgaatgaaaaagaccccagaaggctgtgggtctcactcgaagaaagattggcaacatccatgactccttgcttcctgacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

112

Amino Acids

12.75

Weight (kDa)

5.54

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023034)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000259.1_g000029 Rmu_sc0001359.1_g000009 Rmu_sc0006126.1_g000003 Rmu_sc0006184.1_g000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 248
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 2 cut(s) 155, 161
AluI AGCT 2 cut(s) 155, 161
Alw26I GTCTC 1 cut(s) 292
Ama87I CYCGRG 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 119
BbvI GCAGC 1 cut(s) 191
BccI CCATC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 2 cut(s) 126, 337
BfmI CTRYAG 1 cut(s) 96
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 2 cut(s) 74, 141
BsaI GGTCTC 1 cut(s) 292
Bse1I ACTGG 3 cut(s) 49, 55, 244
BseBI CCWGG 1 cut(s) 131
BseGI GGATG 3 cut(s) 210, 238, 311
BseNI ACTGG 3 cut(s) 49, 55, 244
BseXI GCAGC 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 292
Bso31I GGTCTC 1 cut(s) 292
BsoBI CYCGRG 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 292
BsrI ACTGG 3 cut(s) 49, 55, 244
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 83, 153
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 3 cut(s) 210, 238, 311
BstMAI GTCTC 1 cut(s) 292
BstMWI GCNNNNNNNGC 4 cut(s) 167, 176, 188, 197
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 191
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 3 cut(s) 210, 238, 311
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 83, 153
Csp6I GTAC 1 cut(s) 247
CviAII CATG 1 cut(s) 316
CviJI RGCY 8 cut(s) 95, 124, 129, 155, 161, 182, 206, 280
CviKI_1 RGCY 8 cut(s) 95, 124, 129, 155, 161, 182, 206, 280
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 184
Eco31I GGTCTC 1 cut(s) 292
Eco32I GATATC 2 cut(s) 56, 76
Eco88I CYCGRG 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 129
EcoRV GATATC 2 cut(s) 56, 76
FaeI CATG 1 cut(s) 319
FaiI YATR 7 cut(s) 98, 113, 228, 230, 255, 257, 317
FatI CATG 1 cut(s) 315
FauNDI CATATG 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 3 cut(s) 197, 245, 298
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 2 cut(s) 126, 337
GluI GCNGC 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 227
Hin1II CATG 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 4 cut(s) 102, 115, 236, 319
Hpy188III TCNNGA 3 cut(s) 71, 119, 331
HpyAV CCTTC 1 cut(s) 270
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 176, 188, 197
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 1 cut(s) 319
LmnI GCTCC 2 cut(s) 34, 246
LpnPI CCDG 9 cut(s) 23, 30, 36, 46, 95, 116, 143, 257, 286
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 126, 337
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 5
MboII GAAGA 1 cut(s) 308
MluCI AATT 1 cut(s) 17
MlyI GAGTC 2 cut(s) 109, 313
MnlI CCTC 1 cut(s) 181
MslI CAYNNNNRTG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 4 cut(s) 167, 176, 188, 197
NdeI CATATG 1 cut(s) 228
NlaIII CATG 1 cut(s) 319
PaeR7I CTCGAG 1 cut(s) 119
PfeI GAWTC 2 cut(s) 102, 236
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 2 cut(s) 109, 313
PpsI GAGTC 2 cut(s) 109, 313
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 231
SatI GCNGC 1 cut(s) 180
SchI GAGTC 2 cut(s) 109, 313
ScrFI CCNGG 1 cut(s) 131
SetI ASST 6 cut(s) 12, 65, 138, 157, 163, 338
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 96
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 3 cut(s) 89, 119, 156
SmoI CTYRAG 3 cut(s) 89, 119, 156
Sse9I AATT 1 cut(s) 17
SspMI CTAG 2 cut(s) 126, 337
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 138
TaqI TCGA 2 cut(s) 120, 294
TasI AATT 1 cut(s) 17
TfiI GAWTC 2 cut(s) 102, 236
TscAI CASTG 1 cut(s) 55
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 272, 276
TspRI CASTG 1 cut(s) 55
XhoI CTCGAG 1 cut(s) 119
XspI CTAG 2 cut(s) 126, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.