Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000266.1

Orthogroup ID

OG0012784

Physical Location & Seq

Genomic Coordinates Reverse (-)

25096 .. 27461

Gene Structure 2366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

atggactgctcacccaccagctctgacaagaaaacgttaaagaggtggttcttcatagacaagagggtcggtaatttcaaaaccaatctggatccaatggagttgaagacaaaccatgctgctacagttctcactgatcctgcacctactataagtaagtcgagactaggcatccattctagtttgttgccatattcacagcaaggagcaccattctctagcaagtatatcacaattccaaggaaaaaaccaggaaagcttgatgatgtttggtccaatggttggcttgatgccatgaaatcttcttcacctccccgaaagaagctcaataaggatttcagtgttgaggttgcttcagatgataatgacaatgcttacctctcttggatgcttaagcatccatcagcactcaatttttttgagcgcattacaagttttgcaaggaacaagaagatagcggtgtttctagattatgatgggactctttcacccatagttgatgaccctgatcgtgcattaatgtctgatgccatgcgcgacgctgtacgaaatgttgcaaagtattttccaactgcaatcattagtggaagaaaccgcgataaggtttatgagttggtaggattaacagaactttattatgctggaagtcatggaatggacataatgggtcctgtcactaatacagacagtgtgaattctacggaccagcagggcaaggaggtaaagcttttccagcctgctaaagagtttttacctatgatcgacgaggtttttagaaccctcgttgaaaatactaagggaatcaaaggcgcaaaagttgaaaatcacaagttttgtgcttctgtacattaccgtaatgtagatgagaagaattggtcaacaattgctcaacgtgttcatgatgtcctaaaagactaccctcgtttacgattaactcatgggcggaaggttttagaggtccgccctgtaattgaatggaacaagggaaaagcagttgaatttctgcttggatctcttgggctaaatagtagggatgaagtgctttcaatatatattggtgatgataggactgatgaagatgcattcaaggtcttaaagaaaaagaaccgaggatatggaattctggtatctcctattccaaaagaaaccagtgccttttattctctcagggaaccagcagaggtgatggaattcctcaaggccttggtgagctggaaggatcaggaagaagccaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004805 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0034637 GO:0040007 GO:0042578 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046351 GO:0046872 GO:0071704 GO:0071944 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

412

Amino Acids

46.69

Weight (kDa)

9.02

Isoelectric Point (pI)

28.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	155 - 392	1.3e-67	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12430 AT4G22590
fragaria_vesca	FvH4_5g00270 FvH4_5g00270
prunus_persica	Prupe.5G075400_v2.0.a1 Prupe.5G075400_v2.0.a1 Prupe.5G075400_v2.0.a1 Prupe.5G075400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0202351
rosa_laevigata	RLG00000003607
rosa_multiflora	Rmu_sc0000266.1_g000006
rosa_roxburghii	Rroxscaffold_3G00254650
rosa_rugosa	Rorug07G0070000
rosa_samantha	Rh7AG197400 Rh7BG198500 Rh7CG208500 Rh7DG204200
rosa_wichuraiana	Rw7G017310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AccB7I	CCANNNNNTGG	1 cut(s)	282
AccII	CGCG	2 cut(s)	537, 597
AciI	CCGC	4 cut(s)	458, 595, 943, 961
AclI	AACGTT	1 cut(s)	35
AclWI	GGATC	5 cut(s)	86, 99, 131, 1018, 1227
AcsI	RAATTY	4 cut(s)	694, 998, 1119, 1190
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	2 cut(s)	546, 846
AfiI	CCNNNNNNNGG	2 cut(s)	282, 601
AflII	CTTAAG	1 cut(s)	392
AflIII	ACRYGT	1 cut(s)	892
AgsI	TTSAA	8 cut(s)	79, 106, 788, 821, 974, 998, 1047, 1087
AjnI	CCWGG	1 cut(s)	250
AjuI	GAANNNNNNNTTGG	2 cut(s)	990, 1022
AluBI	AGCT	5 cut(s)	21, 259, 325, 727, 1212
AluI	AGCT	5 cut(s)	21, 259, 325, 727, 1212
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	5 cut(s)	86, 99, 131, 1018, 1227
AoxI	GGCC	1 cut(s)	1200
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	4 cut(s)	694, 998, 1119, 1190
AseI	ATTAAT	1 cut(s)	518
AspLEI	GCGC	3 cut(s)	426, 537, 812
AspS9I	GGNCC	4 cut(s)	273, 668, 703, 958
AsuHPI	GGTGA	6 cut(s)	3, 300, 480, 1070, 1195, 1219
AvaII	GGWCC	4 cut(s)	273, 668, 703, 958
BamHI	GGATCC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	3 cut(s)	409, 470, 1180
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	4 cut(s)	167, 180, 219, 467
BfmI	CTRYAG	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	392
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	4 cut(s)	273, 668, 703, 958
BmgT120I	GGNCC	4 cut(s)	273, 668, 703, 958
BmiI	GGNNCC	3 cut(s)	93, 669, 1173
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	6 cut(s)	180, 280, 378, 406, 517, 1069
BpiI	GAAGAC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	1181
BsaJI	CCNNGG	3 cut(s)	239, 1108, 1203
Bsc4I	CCNNNNNNNGG	2 cut(s)	282, 601
Bse1I	ACTGG	1 cut(s)	1149
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	3 cut(s)	239, 1108, 1203
BseGI	GGATG	4 cut(s)	171, 393, 397, 1039
BseLI	CCNNNNNNNGG	2 cut(s)	282, 601
BseMII	CTCAG	1 cut(s)	1180
BseNI	ACTGG	1 cut(s)	1149
BseXI	GCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	126
Bsh1236I	CGCG	2 cut(s)	537, 597
BshFI	GGCC	1 cut(s)	1202
BsiHKAI	GWGCWC	1 cut(s)	211
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	2 cut(s)	282, 601
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	493
BsmI	GAATGC	1 cut(s)	1082
BsnI	GGCC	1 cut(s)	1202
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	844
Bsp143I	GATC	6 cut(s)	91, 136, 508, 759, 1010, 1219
BspACI	CCGC	4 cut(s)	458, 595, 943, 961
BspANI	GGCC	1 cut(s)	1202
BspCNI	CTCAG	1 cut(s)	1179
BspFNI	CGCG	2 cut(s)	537, 597
BspHI	TCATGA	1 cut(s)	898
BspLI	GGNNCC	3 cut(s)	93, 669, 1173
BspPI	GGATC	5 cut(s)	86, 99, 131, 1018, 1227
BspTI	CTTAAG	1 cut(s)	392
BsrGI	TGTACA	1 cut(s)	844
BsrI	ACTGG	1 cut(s)	1149
BssECI	CCNNGG	3 cut(s)	239, 1108, 1203
BssMI	GATC	6 cut(s)	91, 136, 508, 759, 1010, 1219
BssT1I	CCWWGG	2 cut(s)	239, 1203
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	3 cut(s)	127, 689, 854
BstAFI	CTTAAG	1 cut(s)	392
BstAUI	TGTACA	1 cut(s)	844
BstC8I	GCNNGC	1 cut(s)	738
BstDEI	CTNAG	2 cut(s)	795, 1166
BstF5I	GGATG	4 cut(s)	171, 393, 397, 1039
BstFNI	CGCG	2 cut(s)	537, 597
BstHHI	GCGC	3 cut(s)	426, 537, 812
BstKTI	GATC	6 cut(s)	94, 139, 511, 762, 1013, 1222
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	6 cut(s)	91, 136, 508, 759, 1010, 1219
BstMWI	GCNNNNNNNGC	1 cut(s)	733
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	123
BstUI	CGCG	2 cut(s)	537, 597
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	2 cut(s)	91, 1010
BstYI	RGATCY	2 cut(s)	91, 1010
BsuRI	GGCC	1 cut(s)	1202
BtsCI	GGATG	4 cut(s)	171, 393, 397, 1039
BtsIMutI	CAGTG	4 cut(s)	132, 346, 694, 1156
Cac8I	GCNNGC	1 cut(s)	738
CciI	TCATGA	1 cut(s)	898
CfoI	GCGC	3 cut(s)	426, 537, 812
Cfr13I	GGNCC	4 cut(s)	273, 668, 703, 958
CseI	GACGC	1 cut(s)	548
Csp6I	GTAC	2 cut(s)	545, 845
CviAII	CATG	6 cut(s)	116, 295, 532, 650, 899, 938
CviQI	GTAC	2 cut(s)	545, 845
DdeI	CTNAG	2 cut(s)	795, 1166
DpnI	GATC	6 cut(s)	93, 138, 510, 761, 1012, 1221
DpnII	GATC	6 cut(s)	91, 136, 508, 759, 1010, 1219
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
EciI	GGCGGA	2 cut(s)	950, 958
Eco130I	CCWWGG	2 cut(s)	239, 1203
Eco147I	AGGCCT	1 cut(s)	1202
Eco47I	GGWCC	4 cut(s)	273, 668, 703, 958
Eco57I	CTGAAG	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRI	GAATTC	3 cut(s)	694, 1119, 1190
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	2 cut(s)	239, 1203
EcoT22I	ATGCAT	1 cut(s)	1084
ErhI	CCWWGG	2 cut(s)	239, 1203
FaeI	CATG	6 cut(s)	119, 298, 535, 653, 902, 941
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	6 cut(s)	115, 294, 531, 649, 898, 937
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	4 cut(s)	158, 384, 400, 1046
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	4 cut(s)	167, 180, 219, 467
GlaI	GCGC	3 cut(s)	425, 536, 811
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	1202
HgaI	GACGC	1 cut(s)	548
HhaI	GCGC	3 cut(s)	426, 537, 812
Hin1II	CATG	6 cut(s)	119, 298, 535, 653, 902, 941
Hin6I	GCGC	3 cut(s)	424, 535, 810
HinP1I	GCGC	3 cut(s)	424, 535, 810
HincII	GTYRAC	1 cut(s)	879
HindII	GTYRAC	1 cut(s)	879
HindIII	AAGCTT	2 cut(s)	257, 725
HinfI	GANTC	2 cut(s)	481, 801
HphI	GGTGA	6 cut(s)	3, 300, 480, 1070, 1195, 1219
Hpy166II	GTNNAC	2 cut(s)	879, 926
Hpy188I	TCNGA	3 cut(s)	25, 358, 526
Hpy188III	TCNNGA	5 cut(s)	89, 162, 467, 899, 1223
Hpy8I	GTNNAC	2 cut(s)	879, 926
Hpy99I	CGWCG	2 cut(s)	542, 767
HpyAV	CCTTC	2 cut(s)	940, 1210
HpyCH4III	ACNGT	3 cut(s)	127, 689, 854
HpyCH4IV	ACGT	2 cut(s)	35, 892
HpyCH4V	TGCA	6 cut(s)	143, 440, 515, 557, 575, 1082
HpyF10VI	GCNNNNNNNGC	1 cut(s)	733
HpyF3I	CTNAG	2 cut(s)	795, 1166
HpySE526I	ACGT	2 cut(s)	35, 892
Hsp92II	CATG	6 cut(s)	119, 298, 535, 653, 902, 941
HspAI	GCGC	3 cut(s)	424, 535, 810
Kzo9I	GATC	6 cut(s)	91, 136, 508, 759, 1010, 1219
LmnI	GCTCC	1 cut(s)	206
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	6 cut(s)	180, 280, 378, 406, 517, 1069
MaeI	CTAG	4 cut(s)	167, 180, 219, 467
MaeII	ACGT	2 cut(s)	35, 892
MaeIII	GTNAC	1 cut(s)	673
MalI	GATC	6 cut(s)	93, 138, 510, 761, 1012, 1221
MboI	GATC	6 cut(s)	91, 136, 508, 759, 1010, 1219
MboII	GAAGA	9 cut(s)	43, 118, 294, 297, 463, 600, 880, 1088, 1238
MfeI	CAATTG	2 cut(s)	882, 1234
MflI	RGATCY	2 cut(s)	91, 1010
MhlI	GDGCHC	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	1 cut(s)	593
Mph1103I	ATGCAT	1 cut(s)	1084
MseI	TTAA	6 cut(s)	38, 393, 518, 623, 932, 1094
MspCI	CTTAAG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	252
MunI	CAATTG	2 cut(s)	882, 1234
Mva1269I	GAATGC	1 cut(s)	1082
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	2 cut(s)	537, 597
MwoI	GCNNNNNNNGC	1 cut(s)	733
NdeII	GATC	6 cut(s)	91, 136, 508, 759, 1010, 1219
NlaIII	CATG	6 cut(s)	119, 298, 535, 653, 902, 941
NlaIV	GGNNCC	3 cut(s)	93, 669, 1173
NmuCI	GTSAC	1 cut(s)	673
NsiI	ATGCAT	1 cut(s)	1084
PagI	TCATGA	1 cut(s)	898
PceI	AGGCCT	1 cut(s)	1202
PctI	GAATGC	1 cut(s)	1082
PfeI	GAWTC	1 cut(s)	801
PflMI	CCANNNNNTGG	1 cut(s)	282
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PpuMI	RGGWCCY	1 cut(s)	668
PshBI	ATTAAT	1 cut(s)	518
Psp1406I	AACGTT	1 cut(s)	35
Psp5II	RGGWCCY	1 cut(s)	668
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	3 cut(s)	93, 669, 1173
PspPI	GGNCC	4 cut(s)	273, 668, 703, 958
PspPPI	RGGWCCY	1 cut(s)	668
PsuI	RGATCY	2 cut(s)	91, 1010
RsaI	GTAC	2 cut(s)	546, 846
RsaNI	GTAC	2 cut(s)	545, 845
SaqAI	TTAA	6 cut(s)	38, 393, 518, 623, 932, 1094
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	6 cut(s)	91, 136, 508, 759, 1010, 1219
Sau96I	GGNCC	4 cut(s)	273, 668, 703, 958
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	6 cut(s)	180, 280, 378, 406, 517, 1069
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	4 cut(s)	273, 668, 703, 958
SmlI	CTYRAG	2 cut(s)	392, 1196
SmoI	CTYRAG	2 cut(s)	392, 1196
SseBI	AGGCCT	1 cut(s)	1202
SsiI	CCGC	4 cut(s)	458, 595, 943, 961
SspMI	CTAG	4 cut(s)	167, 180, 219, 467
StuI	AGGCCT	1 cut(s)	1202
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	2 cut(s)	239, 1203
TaaI	ACNGT	3 cut(s)	127, 689, 854
TaiI	ACGT	2 cut(s)	38, 895
TaqI	TCGA	2 cut(s)	161, 762
TatI	WGTACW	1 cut(s)	844
TfiI	GAWTC	1 cut(s)	801
Tru1I	TTAA	6 cut(s)	38, 393, 518, 623, 932, 1094
Tru9I	TTAA	6 cut(s)	38, 393, 518, 623, 932, 1094
TscAI	CASTG	4 cut(s)	139, 346, 694, 1156
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	5 cut(s)	43, 311, 887, 1050, 1089
TspGWI	ACGGA	1 cut(s)	716
TspRI	CASTG	4 cut(s)	139, 346, 694, 1156
Van91I	CCANNNNNTGG	1 cut(s)	282
Vha464I	CTTAAG	1 cut(s)	392
VpaK11BI	GGWCC	4 cut(s)	273, 668, 703, 958
VspI	ATTAAT	1 cut(s)	518
XapI	RAATTY	4 cut(s)	694, 998, 1119, 1190
XbaI	TCTAGA	1 cut(s)	466
XspI	CTAG	4 cut(s)	167, 180, 219, 467
Zsp2I	ATGCAT	1 cut(s)	1084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.