Rmu_sc0000384.1_g000008

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000384.1
OG0018453
Physical Location & Seq
Reverse (-)
25389 .. 28628
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1749 bp
atgaagaagaatcagagatcaacgaacaaagatcacatgaatgattattcagagtcagaggattggtgcttcatctgcaaagacggtggggttctgattctgtgcgaccacgagggctgcttcaaagcctatcaccctcgctgcgttggaaagaagatatctttcctcaagaaacaaaagcgctggatttgtagtcaccactcctgctcagcatgcggtgttgccgcctctggaactaagatcctctcttgccttctttgcacttatgcagtgtgtggtagttgctgcaaaagcagcgatactaattcggagtttgcagtggtgagagggaaggagaaacttggcctttgcaatgactgcttagggattgttaggcttgcagaagaaaatggaccgtatggagtagatggaaagaaattaggcttcgaggatccggaaacatttgaatacggattcaaagaatgttgggaaatcatcaaggaaaaggagggcttgaccttggatgatctctacttcccatattccaaaggggtaacagatagtcatgacagtgaaggcacagaaactcacaagttaacattgagcaaacgcaaggcagaagccgcaatttgtgaggataacaaagatgaatttggtagtgacgatcttgctgcaagcaaccacaagaagaaaaaattagtgagctcatcagagtatatgacatcagaatctgatttgcatgaggaaaataactccgaggaaaaagaggaaatgattcctagtccgactaggaatgacgaatcagagtggcgctttgcatctatagttgctagtaatatgaaacttgtctacttgagaaggagcttagtggaggagctgatatccaagcagcctgatagttgggaaagaaaactagttggaagttatgtgagagtggaaaatgaacccgaggactattttcagataaaatcttcttaccaactttcacaagtgaaaggcataattaggaaccacaacaatggagaagaaattctcctgcatctgctaacaagagaggttcgaatttctatgctatcggattgtgacttcactgaggaagattgtgaagatttgcaagaaagggtgaacaattacctgatgaggagaccgacggttgttgaaattgaacaaaaagcgagagagctacatgaagatataacaaaggattggattgagagagagttggtccggttactgaaatgcattgatcacgaggaatatcagcatggatggatcagcagagagttatgtgagtattatttgctaaagcaaccatctgagcaggaaagactccgaaaagagaggaaagttgtcttcccttttctgttagggtctaatatcagcttcatctcttcagattgccgatctctcacaggaacaagaacgacgaccagaccggcctcatctttacagatcgccttcgtctgtcttcgcccaccgtcgattcttcgtcgcccagaaagctgcgcatcgttgcccagatccgtcgtgcgcccaggttcttcgtcgcccagaaagccgcgcgtcgtcgccctgtttccggcgtcgctgcctgttctccggacgagcctccatctcaggtcaggtcgcccgctcgttcatccctgccggttctccagtcgggtcaggtcgcctactaatccaacccagcccatcgttccagcctcactcggtcaagagcttcactcggtcaagagctccactcggtcaactcacccagtcaacctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

582

Amino Acids

66.34

Weight (kDa)

6.81

Isoelectric Point (pI)

60.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plus-3 PF03126 272 - 368 1.8e-10 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018453)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08140
rosa_chinensis RchiOBHm_Chr3g0458001
rosa_laevigata RLG00000025180
rosa_multiflora Rmu_sc0000384.1_g000008
rosa_rugosa Rorug03G0024100
rosa_samantha Rh3BG087400 Rh3CG087900 Rh3DG088200
rosa_wichuraiana Rw0G012390 Rw3G007210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1486
AccBSI CCGCTC 1 cut(s) 1612
AccI GTMKAC 1 cut(s) 828
AccII CGCG 2 cut(s) 1540, 1542
AccIII TCCGGA 2 cut(s) 433, 1578
AciI CCGC 5 cut(s) 216, 225, 603, 1538, 1610
AclWI GGATC 5 cut(s) 235, 425, 438, 1259, 1494
AcsI RAATTY 3 cut(s) 629, 1008, 1041
AcuI CTGAAG 1 cut(s) 1356
AcyI GRCGYC 1 cut(s) 1562
AfeI AGCGCT 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 1558
AgsI TTSAA 5 cut(s) 124, 446, 457, 1139, 1145
AhlI ACTAGT 1 cut(s) 892
AjnI CCWGG 1 cut(s) 1513
AluBI AGCT 8 cut(s) 684, 843, 856, 1162, 1362, 1482, 1699, 1716
AluI AGCT 8 cut(s) 684, 843, 856, 1162, 1362, 1482, 1699, 1716
Alw21I GWGCWC 2 cut(s) 686, 1718
Alw26I GTCTC 1 cut(s) 1117
AlwI GGATC 5 cut(s) 235, 425, 438, 1259, 1494
AlwNI CAGNNNCTG 1 cut(s) 710
Ama87I CYCGRG 1 cut(s) 926
Aor13HI TCCGGA 2 cut(s) 433, 1578
Aor51HI AGCGCT 1 cut(s) 182
AoxI GGCC 2 cut(s) 343, 1416
ApeKI GCWGC 8 cut(s) 117, 141, 285, 294, 650, 868, 1482, 1567
ApoI RAATTY 3 cut(s) 629, 1008, 1041
Asp700I GAANNNNTTC 2 cut(s) 753, 1008
AspLEI GCGC 5 cut(s) 183, 792, 1487, 1512, 1542
AspS9I GGNCC 2 cut(s) 392, 1204
AsuHPI GGTGA 5 cut(s) 125, 188, 334, 1114, 1724
AsuII TTCGAA 1 cut(s) 1039
AvaI CYCGRG 1 cut(s) 926
AvaII GGWCC 2 cut(s) 392, 1204
BamHI GGATCC 1 cut(s) 430
BanII GRGCYC 2 cut(s) 686, 1718
BauI CACGAG 2 cut(s) 110, 1229
BbsI GAAGAC 2 cut(s) 1324, 1439
Bbv12I GWGCWC 2 cut(s) 686, 1718
BbvI GCAGC 8 cut(s) 104, 128, 272, 306, 637, 880, 1469, 1554
BccI CCATC 5 cut(s) 401, 1242, 1300, 1599, 1679
BcgI CGANNNNNNTGC 2 cut(s) 632, 666
BciT130I CCWGG 1 cut(s) 1515
BclI TGATCA 1 cut(s) 1225
BcoDI GTCTC 1 cut(s) 1117
BcuI ACTAGT 1 cut(s) 892
BfaI CTAG 4 cut(s) 759, 768, 810, 893
BfmI CTRYAG 1 cut(s) 801
BfoI RGCGCY 2 cut(s) 184, 793
BlpI GCTNAGC 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 1515
Bme18I GGWCC 2 cut(s) 392, 1204
BmeT110I CYCGRG 1 cut(s) 926
BmgT120I GGNCC 2 cut(s) 392, 1204
BmiI GGNNCC 2 cut(s) 432, 989
BmrFI CCNGG 1 cut(s) 1515
BmrI ACTGGG 1 cut(s) 1730
BmsI GCATC 3 cut(s) 806, 1027, 1496
BmuI ACTGGG 1 cut(s) 1730
BpiI GAAGAC 2 cut(s) 1324, 1439
BplI GAGNNNNNCTC 4 cut(s) 1688, 1720, 1705, 1737
BpmI CTGGAG 1 cut(s) 1618
Bpu10I CCTNAGC 1 cut(s) 361
Bpu1102I GCTNAGC 1 cut(s) 208
Bpu14I TTCGAA 1 cut(s) 1039
BpuEI CTTGAG 2 cut(s) 152, 853
BsaHI GRCGYC 1 cut(s) 1562
BsaI GGTCTC 1 cut(s) 1117
BsaJI CCNNGG 4 cut(s) 498, 735, 927, 1513
BsaWI WCCGGW 3 cut(s) 433, 1206, 1578
Bsc4I CCNNNNNNNGG 1 cut(s) 1558
Bse118I RCCGGY 2 cut(s) 1414, 1626
Bse1I ACTGG 2 cut(s) 1635, 1736
Bse3DI GCAATG 1 cut(s) 358
BseAI TCCGGA 2 cut(s) 433, 1578
BseBI CCWGG 1 cut(s) 1515
BseDI CCNNGG 4 cut(s) 498, 735, 927, 1513
BseGI GGATG 3 cut(s) 508, 1253, 1618
BseLI CCNNNNNNNGG 1 cut(s) 1558
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 4 cut(s) 222, 1062, 1287, 1609
BseNI ACTGG 2 cut(s) 1635, 1736
BseRI GAGGAG 2 cut(s) 866, 1135
BseXI GCAGC 8 cut(s) 104, 128, 272, 306, 637, 880, 1469, 1554
BseYI CCCAGC 1 cut(s) 1665
Bsh1236I CGCG 2 cut(s) 1540, 1542
BshFI GGCC 2 cut(s) 345, 1418
BsiHKAI GWGCWC 2 cut(s) 686, 1718
BsiHKCI CYCGRG 1 cut(s) 926
BsiSI CCGG 6 cut(s) 434, 1207, 1415, 1559, 1579, 1627
BslI CCNNNNNNNGG 1 cut(s) 1558
BsmAI GTCTC 1 cut(s) 1117
BsnI GGCC 2 cut(s) 345, 1418
Bso31I GGTCTC 1 cut(s) 1117
BsoBI CYCGRG 1 cut(s) 926
Bsp119I TTCGAA 1 cut(s) 1039
Bsp1286I GDGCHC 2 cut(s) 686, 1718
Bsp13I TCCGGA 2 cut(s) 433, 1578
Bsp1720I GCTNAGC 1 cut(s) 208
BspACI CCGC 5 cut(s) 216, 225, 603, 1538, 1610
BspANI GGCC 2 cut(s) 345, 1418
BspCNI CTCAG 4 cut(s) 221, 1063, 1288, 1608
BspEI TCCGGA 2 cut(s) 433, 1578
BspFNI CGCG 2 cut(s) 1540, 1542
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 2 cut(s) 432, 989
BspPI GGATC 5 cut(s) 235, 425, 438, 1259, 1494
BspT104I TTCGAA 1 cut(s) 1039
BspTNI GGTCTC 1 cut(s) 1117
BsrBI CCGCTC 1 cut(s) 1612
BsrDI GCAATG 1 cut(s) 358
BsrFI RCCGGY 2 cut(s) 1414, 1626
BsrI ACTGG 2 cut(s) 1635, 1736
BssAI RCCGGY 2 cut(s) 1414, 1626
BssECI CCNNGG 4 cut(s) 498, 735, 927, 1513
BssNI GRCGYC 1 cut(s) 1562
BssSI CACGAG 2 cut(s) 110, 1229
BssT1I CCWWGG 1 cut(s) 498
Bst2BI CACGAG 2 cut(s) 110, 1229
Bst2UI CCWGG 1 cut(s) 1515
Bst4CI ACNGT 5 cut(s) 86, 396, 551, 1132, 1458
Bst6I CTCTTC 1 cut(s) 1375
BstACI GRCGYC 1 cut(s) 1562
BstAPI GCANNNNNTGC 1 cut(s) 357
BstBI TTCGAA 1 cut(s) 1039
BstC8I GCNNGC 4 cut(s) 214, 378, 655, 1610
BstDEI CTNAG 7 cut(s) 208, 237, 361, 844, 1071, 1296, 1595
BstF5I GGATG 3 cut(s) 508, 1253, 1618
BstFNI CGCG 2 cut(s) 1540, 1542
BstH2I RGCGCY 2 cut(s) 184, 793
BstHHI GCGC 5 cut(s) 183, 792, 1487, 1512, 1542
BstMAI GTCTC 1 cut(s) 1117
BstMWI GCNNNNNNNGC 9 cut(s) 75, 213, 258, 291, 294, 357, 602, 1479, 1534
BstNI CCWGG 1 cut(s) 1515
BstNSI RCATGY 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 1513
BstSFI CTRYAG 1 cut(s) 801
BstUI CGCG 2 cut(s) 1540, 1542
BstV1I GCAGC 8 cut(s) 104, 128, 272, 306, 637, 880, 1469, 1554
BstV2I GAAGAC 2 cut(s) 1324, 1439
BstX2I RGATCY 3 cut(s) 240, 430, 1499
BstXI CCANNNNNNTGG 1 cut(s) 998
BstYI RGATCY 3 cut(s) 240, 430, 1499
BsuRI GGCC 2 cut(s) 345, 1418
BtsCI GGATG 3 cut(s) 508, 1253, 1618
BtsI GCAGTG 2 cut(s) 276, 324
BtsIMutI CAGTG 4 cut(s) 276, 324, 556, 1068
Cac8I GCNNGC 4 cut(s) 214, 378, 655, 1610
CaiI CAGNNNCTG 1 cut(s) 710
CciI TCATGA 1 cut(s) 544
CfoI GCGC 5 cut(s) 183, 792, 1487, 1512, 1542
Cfr10I RCCGGY 2 cut(s) 1414, 1626
Cfr13I GGNCC 2 cut(s) 392, 1204
CseI GACGC 2 cut(s) 1531, 1551
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 6 cut(s) 37, 213, 545, 719, 1166, 1244
DdeI CTNAG 7 cut(s) 208, 237, 361, 844, 1071, 1296, 1595
Eam1104I CTCTTC 1 cut(s) 1375
EarI CTCTTC 1 cut(s) 1375
Ecl136II GAGCTC 2 cut(s) 684, 1716
Eco130I CCWWGG 1 cut(s) 498
Eco24I GRGCYC 2 cut(s) 686, 1718
Eco31I GGTCTC 1 cut(s) 1117
Eco32I GATATC 2 cut(s) 159, 861
Eco47I GGWCC 2 cut(s) 392, 1204
Eco47III AGCGCT 1 cut(s) 182
Eco53kI GAGCTC 2 cut(s) 684, 1716
Eco57I CTGAAG 1 cut(s) 1356
Eco88I CYCGRG 1 cut(s) 926
EcoICRI GAGCTC 2 cut(s) 684, 1716
EcoRII CCWGG 1 cut(s) 1513
EcoRV GATATC 2 cut(s) 159, 861
EcoT14I CCWWGG 1 cut(s) 498
EcoT22I ATGCAT 1 cut(s) 1223
EcoT38I GRGCYC 2 cut(s) 686, 1718
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 6 cut(s) 40, 216, 548, 722, 1169, 1247
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FatI CATG 6 cut(s) 36, 212, 544, 718, 1165, 1243
FauI CCCGC 1 cut(s) 1617
FbaI TGATCA 1 cut(s) 1225
FblI GTMKAC 1 cut(s) 828
FokI GGATG 3 cut(s) 515, 1260, 1605
FriOI GRGCYC 2 cut(s) 686, 1718
FspBI CTAG 4 cut(s) 759, 768, 810, 893
FspI TGCGCA 1 cut(s) 1486
GlaI GCGC 5 cut(s) 182, 791, 1486, 1511, 1541
GsaI CCCAGC 1 cut(s) 1669
GsuI CTGGAG 1 cut(s) 1618
HaeII RGCGCY 2 cut(s) 184, 793
HaeIII GGCC 2 cut(s) 345, 1418
HapII CCGG 6 cut(s) 434, 1207, 1415, 1559, 1579, 1627
HgaI GACGC 2 cut(s) 1531, 1551
HhaI GCGC 5 cut(s) 183, 792, 1487, 1512, 1542
Hin1I GRCGYC 1 cut(s) 1562
Hin1II CATG 6 cut(s) 40, 216, 548, 722, 1169, 1247
Hin6I GCGC 5 cut(s) 181, 790, 1485, 1510, 1540
HinP1I GCGC 5 cut(s) 181, 790, 1485, 1510, 1540
HincII GTYRAC 3 cut(s) 576, 1728, 1741
HindII GTYRAC 3 cut(s) 576, 1728, 1741
HinfI GANTC 9 cut(s) 10, 53, 97, 453, 707, 754, 779, 1308, 1462
HpaI GTTAAC 1 cut(s) 576
HpaII CCGG 6 cut(s) 434, 1207, 1415, 1559, 1579, 1627
HphI GGTGA 5 cut(s) 125, 188, 334, 1114, 1724
Hpy166II GTNNAC 5 cut(s) 576, 829, 1105, 1728, 1741
Hpy188III TCNNGA 8 cut(s) 169, 231, 434, 545, 1229, 1579, 1694, 1711
Hpy8I GTNNAC 5 cut(s) 576, 829, 1105, 1728, 1741
Hpy99I CGWCG 9 cut(s) 1132, 1408, 1462, 1473, 1508, 1528, 1547, 1550, 1567
HpyAV CCTTC 5 cut(s) 263, 325, 548, 831, 1447
HpyCH4III ACNGT 5 cut(s) 86, 396, 551, 1132, 1458
HpyF10VI GCNNNNNNNGC 9 cut(s) 75, 213, 258, 291, 294, 357, 602, 1479, 1534
HpyF3I CTNAG 7 cut(s) 208, 237, 361, 844, 1071, 1296, 1595
Hsp92I GRCGYC 1 cut(s) 1562
Hsp92II CATG 6 cut(s) 40, 216, 548, 722, 1169, 1247
HspAI GCGC 5 cut(s) 181, 790, 1485, 1510, 1540
Kpn2I TCCGGA 2 cut(s) 433, 1578
Ksp22I TGATCA 1 cut(s) 1225
KspAI GTTAAC 1 cut(s) 576
LmnI GCTCC 3 cut(s) 840, 853, 1721
Lsp1109I GCAGC 8 cut(s) 104, 128, 272, 306, 637, 880, 1469, 1554
LweI GCATC 3 cut(s) 806, 1027, 1496
MaeI CTAG 4 cut(s) 759, 768, 810, 893
MaeIII GTNAC 5 cut(s) 194, 532, 638, 1061, 1209
MbiI CCGCTC 1 cut(s) 1612
MflI RGATCY 3 cut(s) 240, 430, 1499
MhlI GDGCHC 2 cut(s) 686, 1718
MlyI GAGTC 2 cut(s) 62, 1302
MmeI TCCRAC 4 cut(s) 127, 788, 877, 1685
Mph1103I ATGCAT 1 cut(s) 1223
MroI TCCGGA 2 cut(s) 433, 1578
MroXI GAANNNNTTC 2 cut(s) 753, 1008
MseI TTAA 1 cut(s) 575
MslI CAYNNNNRTG 3 cut(s) 39, 549, 996
MspI CCGG 6 cut(s) 434, 1207, 1415, 1559, 1579, 1627
MspR9I CCNGG 1 cut(s) 1515
MvaI CCWGG 1 cut(s) 1515
MvnI CGCG 2 cut(s) 1540, 1542
MwoI GCNNNNNNNGC 9 cut(s) 75, 213, 258, 291, 294, 357, 602, 1479, 1534
NlaIII CATG 6 cut(s) 40, 216, 548, 722, 1169, 1247
NlaIV GGNNCC 2 cut(s) 432, 989
NmuCI GTSAC 3 cut(s) 194, 638, 1061
NsbI TGCGCA 1 cut(s) 1486
NsiI ATGCAT 1 cut(s) 1223
NspI RCATGY 1 cut(s) 216
NspV TTCGAA 1 cut(s) 1039
PaeI GCATGC 1 cut(s) 216
PagI TCATGA 1 cut(s) 544
PdmI GAANNNNTTC 2 cut(s) 753, 1008
PfeI GAWTC 7 cut(s) 10, 97, 453, 707, 754, 779, 1462
PleI GAGTC 2 cut(s) 61, 1302
PpsI GAGTC 2 cut(s) 61, 1302
Psp124BI GAGCTC 2 cut(s) 686, 1718
Psp6I CCWGG 1 cut(s) 1513
PspFI CCCAGC 1 cut(s) 1665
PspGI CCWGG 1 cut(s) 1513
PspN4I GGNNCC 2 cut(s) 432, 989
PspPI GGNCC 2 cut(s) 392, 1204
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 3 cut(s) 240, 430, 1499
RseI CAYNNNNRTG 3 cut(s) 39, 549, 996
SacI GAGCTC 2 cut(s) 686, 1718
SaqAI TTAA 1 cut(s) 575
Sau96I GGNCC 2 cut(s) 392, 1204
SchI GAGTC 2 cut(s) 62, 1302
ScrFI CCNGG 1 cut(s) 1515
SduI GDGCHC 2 cut(s) 686, 1718
SfaNI GCATC 3 cut(s) 806, 1027, 1496
SfcI CTRYAG 1 cut(s) 801
SfuI TTCGAA 1 cut(s) 1039
SinI GGWCC 2 cut(s) 392, 1204
SmiMI CAYNNNNRTG 3 cut(s) 39, 549, 996
SmlI CTYRAG 2 cut(s) 167, 832
SmoI CTYRAG 2 cut(s) 167, 832
SpeI ACTAGT 1 cut(s) 892
SphI GCATGC 1 cut(s) 216
SsiI CCGC 5 cut(s) 216, 225, 603, 1538, 1610
SspMI CTAG 4 cut(s) 759, 768, 810, 893
SstI GAGCTC 2 cut(s) 686, 1718
StyD4I CCNGG 1 cut(s) 1513
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 5 cut(s) 86, 396, 551, 1132, 1458
TaqI TCGA 3 cut(s) 426, 1039, 1460
TaqII GACCGA 4 cut(s) 1141, 1679, 1696, 1713
TauI GCSGC 3 cut(s) 227, 605, 1540
TfiI GAWTC 7 cut(s) 10, 97, 453, 707, 754, 779, 1462
Tru1I TTAA 1 cut(s) 575
Tru9I TTAA 1 cut(s) 575
TscAI CASTG 4 cut(s) 276, 324, 556, 1075
TseFI GTSAC 3 cut(s) 194, 638, 1061
TseI GCWGC 8 cut(s) 117, 141, 285, 294, 650, 868, 1482, 1567
Tsp45I GTSAC 3 cut(s) 194, 638, 1061
TspDTI ATGAA 9 cut(s) 17, 53, 61, 642, 833, 936, 1182, 1354, 1607
TspGWI ACGGA 2 cut(s) 465, 1492
TspRI CASTG 4 cut(s) 276, 324, 556, 1075
VpaK11BI GGWCC 2 cut(s) 392, 1204
XapI RAATTY 3 cut(s) 629, 1008, 1041
XceI RCATGY 1 cut(s) 216
XmiI GTMKAC 1 cut(s) 828
XmnI GAANNNNTTC 2 cut(s) 753, 1008
XspI CTAG 4 cut(s) 759, 768, 810, 893
Zsp2I ATGCAT 1 cut(s) 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.