Rmu_sc0000449.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000449.1
OG0021630
Physical Location & Seq
Forward (+)
5089 .. 7152
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000449.1_g000001.1.cds

Sequence Viewer

Length: 627 bp
atgaacgcaagtgatcgaaaatacctcaaacagtccggtttggccagaaaatttgcagaaaacggcgaaacctccgacgagtgtgaaatcgatcacttcaggtgctgtccttcttggtgcttgtcaagcaactcaaggtgggttcaacaagccaagaaactcgagttttggtggccagtagctcgagatattcacttcgcactcaaaacggccggaaatggaaacaagcttcctgccgacgctacaagctatgccaagattcaaggttgccactggcagctgcgcaaggtcgaggcgaagctaatggaggtggtttggtgtggtttggtggccggaggaaggagaacgaagccggagactccttgctctcatctcaaggcccttggaatcctagatatgattctcgagcctagccaggacgtgttaaatgttgagcaaactcaagctttggaagcaaatatagcagccttagaggcaaataaggcaaaagccatcatcctaatgactcatcatatggatgattcgctccagtacgagtgtatgaatgaagaagaccccagaaggctgtgggtctcactcgaagaaagatttgacaatgtccgtgactccctgcttcctgacctataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

208

Amino Acids

23.69

Weight (kDa)

5.89

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 284
AcoI YGGCCR 4 cut(s) 42, 173, 210, 330
AcsI RAATTY 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 82
AfaI GTAC 1 cut(s) 533
AfiI CCNNNNNNNGG 1 cut(s) 339
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 2 cut(s) 146, 263
AjiI CACGTC 1 cut(s) 421
AjnI CCWGG 1 cut(s) 414
AluBI AGCT 6 cut(s) 182, 229, 249, 280, 301, 446
AluI AGCT 6 cut(s) 182, 229, 249, 280, 301, 446
Alw26I GTCTC 2 cut(s) 350, 577
AlwNI CAGNNNCTG 1 cut(s) 105
Ama87I CYCGRG 3 cut(s) 161, 183, 404
AoxI GGCC 5 cut(s) 42, 173, 210, 330, 378
ApeKI GCWGC 3 cut(s) 277, 280, 464
ApoI RAATTY 1 cut(s) 50
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 379
AvaI CYCGRG 3 cut(s) 161, 183, 404
BalI TGGCCA 2 cut(s) 44, 175
BbsI GAAGAC 1 cut(s) 558
BbvI GCAGC 3 cut(s) 267, 289, 476
BccI CCATC 1 cut(s) 500
BceAI ACGGC 2 cut(s) 79, 225
BciT130I CCWGG 1 cut(s) 416
BcoDI GTCTC 2 cut(s) 350, 577
BfaI CTAG 2 cut(s) 392, 411
BglI GCCNNNNNGGC 1 cut(s) 473
BisI GCNGC 3 cut(s) 278, 281, 465
BlsI GCNGC 3 cut(s) 279, 282, 466
Bme1390I CCNGG 1 cut(s) 416
BmeT110I CYCGRG 3 cut(s) 161, 183, 404
BmgBI CACGTC 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 379
BmrFI CCNGG 1 cut(s) 416
BpiI GAAGAC 1 cut(s) 558
BpmI CTGGAG 1 cut(s) 512
BpuEI CTTGAG 3 cut(s) 118, 359, 426
Bsa29I ATCGAT 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 577
BsaJI CCNNGG 1 cut(s) 382
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse1I ACTGG 3 cut(s) 176, 278, 529
BseBI CCWGG 1 cut(s) 416
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 2 cut(s) 495, 523
BseLI CCNNNNNNNGG 1 cut(s) 339
BseNI ACTGG 3 cut(s) 176, 278, 529
BseX3I CGGCCG 1 cut(s) 210
BseXI GCAGC 3 cut(s) 267, 289, 476
Bsh1285I CGRYCG 1 cut(s) 213
BshFI GGCC 5 cut(s) 44, 175, 212, 332, 380
BshVI ATCGAT 1 cut(s) 90
BsiEI CGRYCG 1 cut(s) 213
BsiHKCI CYCGRG 3 cut(s) 161, 183, 404
BsiSI CCGG 4 cut(s) 36, 213, 333, 353
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 2 cut(s) 350, 577
BsnI GGCC 5 cut(s) 44, 175, 212, 332, 380
Bso31I GGTCTC 1 cut(s) 577
BsoBI CYCGRG 3 cut(s) 161, 183, 404
Bsp143I GATC 2 cut(s) 13, 91
BspANI GGCC 5 cut(s) 44, 175, 212, 332, 380
BspDI ATCGAT 1 cut(s) 90
BspTNI GGTCTC 1 cut(s) 577
BsrI ACTGG 3 cut(s) 176, 278, 529
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 2 cut(s) 13, 91
BssT1I CCWWGG 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 469
BstF5I GGATG 2 cut(s) 495, 523
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 2 cut(s) 16, 94
BstMAI GTCTC 2 cut(s) 350, 577
BstMBI GATC 2 cut(s) 13, 91
BstMCI CGRYCG 1 cut(s) 213
BstMWI GCNNNNNNNGC 5 cut(s) 126, 452, 461, 473, 482
BstNI CCWGG 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 414
BstV1I GCAGC 3 cut(s) 267, 289, 476
BstV2I GAAGAC 1 cut(s) 558
BstZI CGGCCG 1 cut(s) 210
Bsu15I ATCGAT 1 cut(s) 90
BsuRI GGCC 5 cut(s) 44, 175, 212, 332, 380
BsuTUI ATCGAT 1 cut(s) 90
BtrI CACGTC 1 cut(s) 421
BtsCI GGATG 2 cut(s) 495, 523
BtsIMutI CAGTG 1 cut(s) 271
CaiI CAGNNNCTG 1 cut(s) 105
CfoI GCGC 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 379
ClaI ATCGAT 1 cut(s) 90
CseI GACGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 532
CviQI GTAC 1 cut(s) 532
DdeI CTNAG 1 cut(s) 469
DpnI GATC 2 cut(s) 15, 93
DpnII GATC 2 cut(s) 13, 91
EaeI YGGCCR 4 cut(s) 42, 173, 210, 330
EagI CGGCCG 1 cut(s) 210
EclXI CGGCCG 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 382
Eco31I GGTCTC 1 cut(s) 577
Eco52I CGGCCG 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 82
Eco88I CYCGRG 3 cut(s) 161, 183, 404
EcoO109I RGGNCCY 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 382
FaiI YATR 7 cut(s) 252, 398, 461, 513, 515, 542, 625
FauNDI CATATG 1 cut(s) 513
Fnu4HI GCNGC 3 cut(s) 278, 281, 465
FokI GGATG 2 cut(s) 482, 530
Fsp4HI GCNGC 3 cut(s) 278, 281, 465
FspBI CTAG 2 cut(s) 392, 411
FspI TGCGCA 1 cut(s) 284
GlaI GCGC 1 cut(s) 284
GluI GCNGC 3 cut(s) 278, 281, 465
GsuI CTGGAG 1 cut(s) 512
HaeIII GGCC 5 cut(s) 44, 175, 212, 332, 380
HapII CCGG 4 cut(s) 36, 213, 333, 353
HgaI GACGC 1 cut(s) 248
HhaI GCGC 1 cut(s) 285
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HindIII AAGCTT 2 cut(s) 227, 444
HinfI GANTC 7 cut(s) 259, 358, 387, 400, 505, 521, 605
HpaII CCGG 4 cut(s) 36, 213, 333, 353
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 3 cut(s) 185, 404, 617
Hpy99I CGWCG 2 cut(s) 80, 242
HpyAV CCTTC 3 cut(s) 120, 333, 555
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 5 cut(s) 126, 452, 461, 473, 482
HpyF3I CTNAG 1 cut(s) 469
HpySE526I ACGT 1 cut(s) 420
HspAI GCGC 1 cut(s) 283
Kzo9I GATC 2 cut(s) 13, 91
LmnI GCTCC 1 cut(s) 531
Lsp1109I GCAGC 3 cut(s) 267, 289, 476
MaeI CTAG 2 cut(s) 392, 411
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 1 cut(s) 602
MalI GATC 2 cut(s) 15, 93
MboI GATC 2 cut(s) 13, 91
MboII GAAGA 3 cut(s) 560, 563, 593
MlsI TGGCCA 2 cut(s) 44, 175
MluCI AATT 1 cut(s) 50
MluNI TGGCCA 2 cut(s) 44, 175
MlyI GAGTC 3 cut(s) 352, 499, 599
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 6 cut(s) 35, 82, 286, 301, 329, 466
Mox20I TGGCCA 2 cut(s) 44, 175
MscI TGGCCA 2 cut(s) 44, 175
MseI TTAA 1 cut(s) 425
MslI CAYNNNNRTG 2 cut(s) 500, 516
Msp20I TGGCCA 2 cut(s) 44, 175
MspA1I CMGCKG 1 cut(s) 280
MspI CCGG 4 cut(s) 36, 213, 333, 353
MspR9I CCNGG 1 cut(s) 416
MvaI CCWGG 1 cut(s) 416
MwoI GCNNNNNNNGC 5 cut(s) 126, 452, 461, 473, 482
NdeI CATATG 1 cut(s) 513
NdeII GATC 2 cut(s) 13, 91
NmuCI GTSAC 1 cut(s) 602
NsbI TGCGCA 1 cut(s) 284
PaeR7I CTCGAG 3 cut(s) 161, 183, 404
PfeI GAWTC 4 cut(s) 259, 387, 400, 521
PflFI GACNNNGTC 1 cut(s) 596
PkrI GCNGC 3 cut(s) 279, 282, 466
PleI GAGTC 3 cut(s) 352, 499, 599
PpsI GAGTC 3 cut(s) 352, 499, 599
Psp6I CCWGG 1 cut(s) 414
PspGI CCWGG 1 cut(s) 414
PspPI GGNCC 1 cut(s) 379
PspXI VCTCGAGB 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 105
PsyI GACNNNGTC 1 cut(s) 596
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 1 cut(s) 533
RsaNI GTAC 1 cut(s) 532
RseI CAYNNNNRTG 2 cut(s) 500, 516
SaqAI TTAA 1 cut(s) 425
SatI GCNGC 3 cut(s) 278, 281, 465
Sau3AI GATC 2 cut(s) 13, 91
Sau96I GGNCC 1 cut(s) 379
SchI GAGTC 3 cut(s) 352, 499, 599
ScrFI CCNGG 1 cut(s) 416
Sfr274I CTCGAG 3 cut(s) 161, 183, 404
SlaI CTCGAG 3 cut(s) 161, 183, 404
SmiMI CAYNNNNRTG 2 cut(s) 500, 516
SmlI CTYRAG 6 cut(s) 133, 161, 183, 374, 404, 441
SmoI CTYRAG 6 cut(s) 133, 161, 183, 374, 404, 441
Sse9I AATT 1 cut(s) 50
SspMI CTAG 2 cut(s) 392, 411
StyD4I CCNGG 1 cut(s) 414
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 1 cut(s) 33
TaiI ACGT 1 cut(s) 423
TaqI TCGA 7 cut(s) 16, 90, 162, 184, 291, 405, 579
TasI AATT 1 cut(s) 50
TfiI GAWTC 4 cut(s) 259, 387, 400, 521
Tru1I TTAA 1 cut(s) 425
Tru9I TTAA 1 cut(s) 425
TscAI CASTG 1 cut(s) 278
TseFI GTSAC 1 cut(s) 602
TseI GCWGC 3 cut(s) 277, 280, 464
Tsp45I GTSAC 1 cut(s) 602
TspDTI ATGAA 3 cut(s) 17, 557, 561
TspGWI ACGGA 1 cut(s) 590
TspRI CASTG 1 cut(s) 278
Tth111I GACNNNGTC 1 cut(s) 596
XapI RAATTY 1 cut(s) 50
XhoI CTCGAG 3 cut(s) 161, 183, 404
XspI CTAG 2 cut(s) 392, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.