Rmu_sc0022414.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022414.1
OG0021630
Physical Location & Seq
Reverse (-)
2788 .. 3138
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022414.1_g000003.1.cds

Sequence Viewer

Length: 351 bp
atgactaacctgaacaaattggactttactccattgggaacaactggctctggatatcacatgtgggttcgtgatgtccgccagcatctcaaggccgatggaatcctagatacgattcttgagcctagccaggacatgctaactgttaagcaagctcaagctttagaagccaataaagcagccttagaggcaaataaggcgaaagccatcatcctaatgactcatcatatggatgattcgttccagtacaagtgtatgaatgaagaagaccccagaaggctgtgtgtctcacgcgaagatagatttggcaacgtccgtgactccctgcttcctgacctagaagtgagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

116

Amino Acids

13.24

Weight (kDa)

5.76

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 294
AciI CCGC 1 cut(s) 79
AfaI GTAC 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 60
AjnI CCWGG 1 cut(s) 129
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
AluBI AGCT 2 cut(s) 155, 161
AluI AGCT 2 cut(s) 155, 161
Alw26I GTCTC 1 cut(s) 292
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 191
BccI CCATC 2 cut(s) 92, 215
BciT130I CCWGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 3 cut(s) 107, 126, 338
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 273
BpuEI CTTGAG 3 cut(s) 74, 140, 141
Bse1I ACTGG 2 cut(s) 49, 244
BseBI CCWGG 1 cut(s) 131
BseGI GGATG 2 cut(s) 210, 238
BseNI ACTGG 2 cut(s) 49, 244
BseXI GCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 292
BsnI GGCC 1 cut(s) 95
BspACI CCGC 1 cut(s) 79
BspANI GGCC 1 cut(s) 95
BspFNI CGCG 1 cut(s) 294
BsrI ACTGG 2 cut(s) 49, 244
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 83, 153
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 2 cut(s) 210, 238
BstFNI CGCG 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 292
BstMWI GCNNNNNNNGC 4 cut(s) 167, 176, 188, 197
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 2 cut(s) 64, 139
BstSCI CCNGG 1 cut(s) 129
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 273
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 2 cut(s) 210, 238
Cac8I GCNNGC 2 cut(s) 83, 153
Csp6I GTAC 1 cut(s) 247
CviAII CATG 2 cut(s) 61, 136
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 184
EciI GGCGGA 1 cut(s) 68
Eco32I GATATC 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 129
EcoRV GATATC 1 cut(s) 56
FaeI CATG 2 cut(s) 64, 139
FaiI YATR 5 cut(s) 62, 137, 228, 230, 257
FatI CATG 2 cut(s) 60, 135
FauNDI CATATG 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 2 cut(s) 197, 245
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 3 cut(s) 107, 126, 338
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 95
Hin1II CATG 2 cut(s) 64, 139
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 5 cut(s) 102, 115, 220, 236, 320
Hpy188III TCNNGA 4 cut(s) 51, 71, 119, 332
HpyAV CCTTC 1 cut(s) 270
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 176, 188, 197
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 2 cut(s) 64, 139
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 94
MaeI CTAG 3 cut(s) 107, 126, 338
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 317
MboII GAAGA 3 cut(s) 275, 278, 308
MluCI AATT 1 cut(s) 17
MlyI GAGTC 2 cut(s) 214, 314
MnlI CCTC 1 cut(s) 181
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 2 cut(s) 215, 231
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 4 cut(s) 167, 176, 188, 197
NdeI CATATG 1 cut(s) 228
NlaIII CATG 2 cut(s) 64, 139
NmuCI GTSAC 1 cut(s) 317
NspI RCATGY 2 cut(s) 64, 139
PciI ACATGT 1 cut(s) 60
PfeI GAWTC 3 cut(s) 102, 115, 236
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 2 cut(s) 214, 314
PpsI GAGTC 2 cut(s) 214, 314
PscI ACATGT 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 215, 231
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 180
SchI GAGTC 2 cut(s) 214, 314
ScrFI CCNGG 1 cut(s) 131
SetI ASST 5 cut(s) 12, 157, 163, 315, 339
SfaNI GCATC 1 cut(s) 94
SmiMI CAYNNNNRTG 2 cut(s) 215, 231
SmlI CTYRAG 3 cut(s) 89, 119, 156
SmoI CTYRAG 3 cut(s) 89, 119, 156
Sse9I AATT 1 cut(s) 17
SsiI CCGC 1 cut(s) 79
SspMI CTAG 3 cut(s) 107, 126, 338
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 315
TasI AATT 1 cut(s) 17
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 3 cut(s) 102, 115, 236
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 272, 276
TspGWI ACGGA 1 cut(s) 305
XceI RCATGY 2 cut(s) 64, 139
XspI CTAG 3 cut(s) 107, 126, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.