Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000483.1

Orthogroup ID

OG0020723

Physical Location & Seq

Genomic Coordinates Forward (+)

150292 .. 152113

Gene Structure 1822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000483.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atggtatcaagctcaaaaacacattatacttccactgaggagcatgaagcatcatcagctcctcagtggaagtatgatgtgtttttgagtttcgggggtcctgacactcgcaggagtatcacatccgaaatatacgatcgattggacaggagaggaattaaaacattcctggattatcaagaactcgaggtagaggatgctatttctcccagtctcctaacaacaattgaagaatcaagctctgccactccgctgctacccaccattgctcctcaccgattagcagacaaagaactcagagcctccaccatcgagaaatggaggctcgcgttttgcgtgtcctgcgccgctgatatcggcactgtcgaagaagatgttgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

127

Amino Acids

14.21

Weight (kDa)

4.72

Isoelectric Point (pI)

69.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020723)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000451.1_g000003 Rmu_sc0000483.1_g000036 Rmu_sc0006084.1_g000013
rosa_rugosa	Rorug07G0263600
rosa_samantha	Rh7CG445300
rosa_wichuraiana	Rw7G035190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	329
AciI	CCGC	2 cut(s)	251, 348
AgsI	TTSAA	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	3 cut(s)	12, 59, 240
AluI	AGCT	3 cut(s)	12, 59, 240
Alw26I	GTCTC	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	218
BisI	GCNGC	2 cut(s)	254, 348
BlsI	GCNGC	2 cut(s)	255, 349
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	170
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	2 cut(s)	59, 187
BmuI	ACTGGG	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bse1I	ACTGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	170
BseCI	ATCGAT	1 cut(s)	139
BseGI	GGATG	2 cut(s)	122, 202
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	3 cut(s)	27, 77, 310
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	3 cut(s)	51, 53, 261
BseXI	GCAGC	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	329
Bsh1285I	CGRYCG	1 cut(s)	139
BshVI	ATCGAT	1 cut(s)	139
BsiEI	CGRYCG	1 cut(s)	139
BsiHKCI	CYCGRG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	2 cut(s)	251, 348
BspCNI	CTCAG	3 cut(s)	28, 76, 309
BspDI	ATCGAT	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	329
BspLI	GGNNCC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	3 cut(s)	36, 63, 296
BstF5I	GGATG	2 cut(s)	122, 202
BstFNI	CGCG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	136
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 342
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	240
Bsu15I	ATCGAT	1 cut(s)	139
BsuTUI	ATCGAT	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	122, 202
BtsIMutI	CAGTG	3 cut(s)	33, 71, 360
Cac8I	GCNNGC	1 cut(s)	327
CfoI	GCGC	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	98
ClaI	ATCGAT	1 cut(s)	139
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	5 cut(s)	12, 59, 240, 302, 325
CviKI_1	RGCY	5 cut(s)	12, 59, 240, 302, 325
DdeI	CTNAG	3 cut(s)	36, 63, 296
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	168
EcoRV	GATATC	1 cut(s)	355
FaeI	CATG	1 cut(s)	47
FaiI	YATR	4 cut(s)	27, 45, 75, 133
FatI	CATG	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	254, 348
FokI	GGATG	2 cut(s)	109, 209
Fsp4HI	GCNGC	2 cut(s)	254, 348
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	2 cut(s)	254, 348
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HinfI	GANTC	1 cut(s)	233
HphI	GGTGA	1 cut(s)	266
Hpy188I	TCNGA	3 cut(s)	127, 299, 383
Hpy188III	TCNNGA	3 cut(s)	101, 179, 313
HpyCH4III	ACNGT	1 cut(s)	364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 342
HpyF3I	CTNAG	3 cut(s)	36, 63, 296
Hsp92II	CATG	1 cut(s)	47
HspAI	GCGC	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	3 cut(s)	40, 64, 274
LpnPI	CCDG	7 cut(s)	97, 114, 133, 155, 182, 223, 355
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	2 cut(s)	59, 187
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	3 cut(s)	242, 380, 383
MfeI	CAATTG	1 cut(s)	225
MluCI	AATT	2 cut(s)	156, 225
MnlI	CCTC	8 cut(s)	31, 72, 146, 181, 187, 282, 313, 315
MseI	TTAA	1 cut(s)	159
MspA1I	CMGCKG	2 cut(s)	253, 350
MspR9I	CCNGG	1 cut(s)	170
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	56, 342
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	99
PaeR7I	CTCGAG	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	2 cut(s)	333, 363
PfeI	GAWTC	1 cut(s)	233
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	255, 349
Ple19I	CGATCG	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	98
PspPPI	RGGWCCY	1 cut(s)	98
PspXI	VCTCGAGB	1 cut(s)	185
PvuI	CGATCG	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	254, 348
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	4 cut(s)	14, 61, 192, 242
SfaNI	GCATC	2 cut(s)	59, 187
Sfr274I	CTCGAG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	156, 225
SsiI	CCGC	2 cut(s)	251, 348
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	4 cut(s)	139, 186, 312, 366
TasI	AATT	2 cut(s)	156, 225
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	3 cut(s)	40, 71, 367
TseI	GCWGC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	3 cut(s)	40, 71, 367
VpaK11BI	GGWCC	1 cut(s)	98
XhoI	CTCGAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.