Rw7G035190

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0020723
Physical Location & Seq
Reverse (-)
52432534 .. 52433236
703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G035190.1

Sequence Viewer

Length: 453 bp
ATGGAAATCTATTTCTTCGAGATGCCTTTGGTGATTATTGTGGTAATTGTGACATGGATCGGTTGCTTGGCCGTTATTAAGAGAATATGGACTCCGCTGAAGCGTCGGTTCAGTTGCATGGTTCAGAAGCATGAGCCAATATGGCCGGATACTCAAATAATGGTCGAGGTCAATGACTTTGCATCTCCTCAGTGGAAGCATGATGTGTTTTTAAGTTTCAGGGGTCCTGACACTCGCAAGGGTATCACAGTTGAACTATTCAATCGACTGCAGATGAGGGGAATTAAAACATTCATGGATGATAGAGATCTTGAAGTAGGGGATGCTATTTCTCGCACTCTCATAGCAGCCATTGAAAAATCAAGAAGAGGAGTTTGGATAAAGCTTTCTCTAAACATGAAACCTCTGGGCGACATGGATTGGAGAAGATGCAGCAGTGGAGGGATGCTTTAG

Protein Analysis

150

Amino Acids

17.53

Weight (kDa)

9.36

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 66 - 127 7.6e-16 TIR domain
TIR_2 PF13676 69 - 126 2.1e-06 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020723)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000451.1_g000003 Rmu_sc0000483.1_g000036 Rmu_sc0006084.1_g000013
rosa_rugosa Rorug07G0263600
rosa_samantha Rh7CG445300
rosa_wichuraiana Rw7G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 95
AclWI GGATC 1 cut(s) 65
AcoI YGGCCR 2 cut(s) 69, 143
AcuI CTGAAG 1 cut(s) 119
AgsI TTSAA 4 cut(s) 254, 262, 314, 356
AjuI GAANNNNNNNTTGG 2 cut(s) 358, 390
AluBI AGCT 1 cut(s) 385
AluI AGCT 1 cut(s) 385
AlwI GGATC 1 cut(s) 65
AoxI GGCC 2 cut(s) 69, 143
ApeKI GCWGC 2 cut(s) 347, 432
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 359, 444
BceAI ACGGC 1 cut(s) 56
BciVI GTATCC 1 cut(s) 142
BfmI CTRYAG 1 cut(s) 269
BfuI GTATCC 1 cut(s) 142
BglI GCCNNNNNGGC 1 cut(s) 142
BglII AGATCT 1 cut(s) 307
BisI GCNGC 2 cut(s) 348, 433
BlsI GCNGC 2 cut(s) 349, 434
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 225
BmsI GCATC 5 cut(s) 12, 191, 313, 419, 435
BsaBI GATNNNNATC 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 306
BseGI GGATG 3 cut(s) 304, 328, 450
BseJI GATNNNNATC 1 cut(s) 306
BseMII CTCAG 1 cut(s) 203
BseRI GAGGAG 2 cut(s) 177, 384
BseXI GCAGC 2 cut(s) 359, 444
BshFI GGCC 2 cut(s) 71, 145
BsiSI CCGG 1 cut(s) 146
BsnI GGCC 2 cut(s) 71, 145
Bsp143I GATC 2 cut(s) 57, 307
BspACI CCGC 1 cut(s) 95
BspANI GGCC 2 cut(s) 71, 145
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 225
BspMAI CTGCAG 1 cut(s) 273
BspPI GGATC 1 cut(s) 65
BssMI GATC 2 cut(s) 57, 307
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 361
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 3 cut(s) 304, 328, 450
BstKTI GATC 2 cut(s) 60, 310
BstMBI GATC 2 cut(s) 57, 307
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 269
BstV1I GCAGC 2 cut(s) 359, 444
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BsuI GTATCC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 71, 145
BtsCI GGATG 3 cut(s) 304, 328, 450
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 2 cut(s) 197, 442
Cfr13I GGNCC 1 cut(s) 224
CseI GACGC 1 cut(s) 92
CviAII CATG 7 cut(s) 54, 118, 131, 200, 295, 397, 415
CviJI RGCY 5 cut(s) 71, 136, 145, 350, 385
CviKI_1 RGCY 5 cut(s) 71, 136, 145, 350, 385
DdeI CTNAG 1 cut(s) 189
DpnI GATC 2 cut(s) 59, 309
DpnII GATC 2 cut(s) 57, 307
EaeI YGGCCR 2 cut(s) 69, 143
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 224
FaeI CATG 7 cut(s) 57, 121, 134, 203, 298, 400, 418
FatI CATG 7 cut(s) 53, 117, 130, 199, 294, 396, 414
Fnu4HI GCNGC 2 cut(s) 348, 433
FokI GGATG 2 cut(s) 311, 335
Fsp4HI GCNGC 2 cut(s) 348, 433
GluI GCNGC 2 cut(s) 348, 433
HaeIII GGCC 2 cut(s) 71, 145
HapII CCGG 1 cut(s) 146
HgaI GACGC 1 cut(s) 92
Hin1II CATG 7 cut(s) 57, 121, 134, 203, 298, 400, 418
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 1 cut(s) 91
HpaII CCGG 1 cut(s) 146
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 4 cut(s) 19, 227, 311, 363
Hpy99I CGWCG 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4V TGCA 4 cut(s) 117, 182, 271, 432
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 7 cut(s) 57, 121, 134, 203, 298, 400, 418
Kzo9I GATC 2 cut(s) 57, 307
LpnPI CCDG 4 cut(s) 159, 205, 240, 392
Lsp1109I GCAGC 2 cut(s) 359, 444
LweI GCATC 5 cut(s) 12, 191, 313, 419, 435
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 59, 309
MboI GATC 2 cut(s) 57, 307
MboII GAAGA 3 cut(s) 7, 378, 438
MflI RGATCY 1 cut(s) 307
MluCI AATT 2 cut(s) 45, 282
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 6 cut(s) 160, 198, 270, 362, 414, 434
MseI TTAA 3 cut(s) 78, 212, 285
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 142
NdeII GATC 2 cut(s) 57, 307
NlaIII CATG 7 cut(s) 57, 121, 134, 203, 298, 400, 418
NlaIV GGNNCC 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 49
PkrI GCNGC 2 cut(s) 349, 434
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PpuMI RGGWCCY 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 224
PspPPI RGGWCCY 1 cut(s) 224
PstI CTGCAG 1 cut(s) 273
PsuI RGATCY 1 cut(s) 307
SaqAI TTAA 3 cut(s) 78, 212, 285
SatI GCNGC 2 cut(s) 348, 433
Sau3AI GATC 2 cut(s) 57, 307
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 85
SetI ASST 3 cut(s) 171, 387, 406
SfaNI GCATC 5 cut(s) 12, 191, 313, 419, 435
SfcI CTRYAG 1 cut(s) 269
SinI GGWCC 1 cut(s) 224
Sse9I AATT 2 cut(s) 45, 282
SsiI CCGC 1 cut(s) 95
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 3 cut(s) 18, 165, 265
TasI AATT 2 cut(s) 45, 282
Tru1I TTAA 3 cut(s) 78, 212, 285
Tru9I TTAA 3 cut(s) 78, 212, 285
TscAI CASTG 2 cut(s) 197, 442
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 2 cut(s) 347, 432
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 283, 413
TspRI CASTG 2 cut(s) 197, 442
VpaK11BI GGWCC 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.