Rmu_sc0006084.1_g000013

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006084.1
OG0020723
Physical Location & Seq
Forward (+)
74909 .. 75238
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006084.1_g000013.1.cds

Sequence Viewer

Length: 330 bp
atggtactcacacctgaagctagtgttgccgccgggacggttgcttcttcctcttcttcatcattagctgttgagtggaagtatgatgtgtttttgagtttcaggggtcctgacactcgaaggagtattacttccgatcgataccatcggctgcaaaacaagagaggaattacaacattcatggatgaccgagatcttctagtaggggatgcgatttctcccgttctcttaaaggcaattgaagaatcaaggtttgcaatcgttgttctgtcggaaaactatgcttcttctatctacttggtgtttggaagaactgacaaagatctgtga

Protein Analysis

109

Amino Acids

12.09

Weight (kDa)

5.75

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020723)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000451.1_g000003 Rmu_sc0000483.1_g000036 Rmu_sc0006084.1_g000013
rosa_rugosa Rorug07G0263600
rosa_samantha Rh7CG445300
rosa_wichuraiana Rw7G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 6
AgsI TTSAA 1 cut(s) 242
AluBI AGCT 2 cut(s) 20, 68
AluI AGCT 2 cut(s) 20, 68
ApeKI GCWGC 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 34
AvaII GGWCC 1 cut(s) 107
BarI GAAGNNNNNNTAC 2 cut(s) 112, 144
BbvI GCAGC 1 cut(s) 138
BccI CCATC 1 cut(s) 153
BcnI CCSGG 1 cut(s) 34
BfaI CTAG 2 cut(s) 21, 200
BglII AGATCT 2 cut(s) 193, 322
BisI GCNGC 2 cut(s) 30, 152
BlsI GCNGC 2 cut(s) 31, 153
Bme1390I CCNGG 1 cut(s) 34
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 34
Bsa29I ATCGAT 1 cut(s) 139
BseCI ATCGAT 1 cut(s) 139
BseGI GGATG 2 cut(s) 190, 214
BseXI GCAGC 1 cut(s) 138
Bsh1285I CGRYCG 1 cut(s) 139
BshVI ATCGAT 1 cut(s) 139
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 49
Bsp143I GATC 3 cut(s) 136, 193, 322
BspACI CCGC 1 cut(s) 30
BspDI ATCGAT 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 108
BssMI GATC 3 cut(s) 136, 193, 322
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 58
BstF5I GGATG 2 cut(s) 190, 214
BstKTI GATC 3 cut(s) 139, 196, 325
BstMBI GATC 3 cut(s) 136, 193, 322
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 138
BstX2I RGATCY 2 cut(s) 193, 322
BstYI RGATCY 2 cut(s) 193, 322
Bsu15I ATCGAT 1 cut(s) 139
BsuTUI ATCGAT 1 cut(s) 139
BtsCI GGATG 2 cut(s) 190, 214
Cfr13I GGNCC 1 cut(s) 107
ClaI ATCGAT 1 cut(s) 139
Csp6I GTAC 1 cut(s) 5
CviAII CATG 1 cut(s) 181
CviJI RGCY 3 cut(s) 20, 68, 151
CviKI_1 RGCY 3 cut(s) 20, 68, 151
CviQI GTAC 1 cut(s) 5
DpnI GATC 3 cut(s) 138, 195, 324
DpnII GATC 3 cut(s) 136, 193, 322
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 107
FaeI CATG 1 cut(s) 184
FaiI YATR 3 cut(s) 84, 182, 282
FaqI GGGAC 1 cut(s) 49
FatI CATG 1 cut(s) 180
Fnu4HI GCNGC 2 cut(s) 30, 152
FokI GGATG 2 cut(s) 197, 221
Fsp4HI GCNGC 2 cut(s) 30, 152
FspBI CTAG 2 cut(s) 21, 200
GluI GCNGC 2 cut(s) 30, 152
HapII CCGG 1 cut(s) 33
Hin1II CATG 1 cut(s) 184
HinfI GANTC 1 cut(s) 245
HpaII CCGG 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 136, 274
Hpy188III TCNNGA 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 2 cut(s) 154, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
Hsp92II CATG 1 cut(s) 184
Kzo9I GATC 3 cut(s) 136, 193, 322
LpnPI CCDG 4 cut(s) 27, 46, 88, 123
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 1 cut(s) 199
MaeI CTAG 2 cut(s) 21, 200
MalI GATC 3 cut(s) 138, 195, 324
MboI GATC 3 cut(s) 136, 193, 322
MboII GAAGA 7 cut(s) 39, 45, 48, 188, 254, 279, 321
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 2 cut(s) 193, 322
MluCI AATT 2 cut(s) 168, 237
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 2 cut(s) 61, 158
MseI TTAA 1 cut(s) 230
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 34
MunI CAATTG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 26
NciI CCSGG 1 cut(s) 34
NdeII GATC 3 cut(s) 136, 193, 322
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 2 cut(s) 31, 153
Ple19I CGATCG 1 cut(s) 139
PpuMI RGGWCCY 1 cut(s) 107
Psp5II RGGWCCY 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 107
PspPPI RGGWCCY 1 cut(s) 107
PsuI RGATCY 2 cut(s) 193, 322
PvuI CGATCG 1 cut(s) 139
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 2 cut(s) 30, 152
Sau3AI GATC 3 cut(s) 136, 193, 322
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 34
SetI ASST 4 cut(s) 16, 22, 70, 254
SfaNI GCATC 1 cut(s) 199
SinI GGWCC 1 cut(s) 107
Sse9I AATT 2 cut(s) 168, 237
SsiI CCGC 1 cut(s) 30
SspMI CTAG 2 cut(s) 21, 200
StyD4I CCNGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 2 cut(s) 118, 139
TaqII GACCGA 1 cut(s) 204
TasI AATT 2 cut(s) 168, 237
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TseI GCWGC 1 cut(s) 151
TspDTI ATGAA 2 cut(s) 48, 169
VpaK11BI GGWCC 1 cut(s) 107
XspI CTAG 2 cut(s) 21, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.