Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000507.1

Orthogroup ID

OG0023024

Physical Location & Seq

Genomic Coordinates Reverse (-)

54322 .. 57347

Gene Structure 3026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000507.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ctgcttcttcctccaccgctagagaaatcgtggaggctcaaggccaccggcccgaaggacagccacagcaaggtttgcaccaccaaaggccccagggatcgcagtatcaggctcgtcgcccacaccgccattcaattctacgacatgcaggaccggcttggatacgaccagcctagcaagggggtcggaggagagaatgagagtggtggtggtcaagccattggcggcggcggccgggatgaactcggagtgaacggctctacaacacgagaaaggtccttcatcacttgcagtggcgcattggcaactctttctggagccaaaataggtcagtgtccgagggacaaacgtgttgtcaaggatgagtccactgagcaaaagctttggtgcatccgacttactcctgaagagctggagaatttcggtactccagacttcactatatacaatgccgtggtagaaaatgtcacattcgacgagcatacccgagaggtggattacagtgacaaatctattacagagaattctcgagcagcgtatcccattgagtacattcccaatgcaaagataccatttgttggccctcatccaaagaatgtgatacttttggcatgtgatgcatttgttgtactcccacctgtcagcaagttaaacctggcgttgaagaaggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

224

Amino Acids

24.51

Weight (kDa)

7.78

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023024)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co7961776.1_g000001 Rmu_sc0000082.1_g000087 Rmu_sc0000507.1_g000009 Rmu_ssc0000255.1_g000061

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	578
AciI	CCGC	5 cut(s)	17, 126, 225, 228, 231
AclWI	GGATC	1 cut(s)	105
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	2 cut(s)	418, 523
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	3 cut(s)	427, 551, 630
AfiI	CCNNNNNNNGG	4 cut(s)	70, 179, 493, 578
AflIII	ACRYGT	1 cut(s)	349
AgsI	TTSAA	2 cut(s)	134, 664
AjnI	CCWGG	2 cut(s)	92, 654
AluBI	AGCT	2 cut(s)	382, 412
AluI	AGCT	2 cut(s)	382, 412
AlwI	GGATC	1 cut(s)	105
Ama87I	CYCGRG	2 cut(s)	486, 528
AoxI	GGCC	5 cut(s)	42, 49, 88, 232, 580
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	2 cut(s)	418, 523
ArsI	GACNNNNNNTTYG	2 cut(s)	339, 371
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	5 cut(s)	50, 89, 151, 276, 581
AsuC2I	CCSGG	1 cut(s)	236
AvaI	CYCGRG	2 cut(s)	486, 528
AvaII	GGWCC	2 cut(s)	151, 276
BauI	CACGAG	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	545
BceAI	ACGGC	2 cut(s)	271, 437
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	2 cut(s)	94, 656
BciVI	GTATCC	2 cut(s)	155, 549
BcnI	CCSGG	1 cut(s)	236
BfaI	CTAG	2 cut(s)	20, 174
BfuI	GTATCC	2 cut(s)	155, 549
BisI	GCNGC	4 cut(s)	226, 229, 232, 534
BlsI	GCNGC	4 cut(s)	227, 230, 233, 535
Bme1390I	CCNGG	3 cut(s)	94, 236, 656
Bme18I	GGWCC	2 cut(s)	151, 276
BmeT110I	CYCGRG	2 cut(s)	486, 528
BmgT120I	GGNCC	5 cut(s)	50, 89, 151, 276, 581
BmiI	GGNNCC	2 cut(s)	91, 319
BmrFI	CCNGG	3 cut(s)	94, 236, 656
BmsI	GCATC	2 cut(s)	399, 607
BpmI	CTGGAG	3 cut(s)	336, 414, 434
BpuEI	CTTGAG	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	236
BsaJI	CCNNGG	4 cut(s)	92, 93, 338, 453
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 179, 493, 578
Bse118I	RCCGGY	2 cut(s)	47, 153
BseBI	CCWGG	2 cut(s)	94, 656
BseDI	CCNNGG	4 cut(s)	92, 93, 338, 453
BseGI	GGATG	4 cut(s)	244, 367, 390, 586
BseLI	CCNNNNNNNGG	4 cut(s)	70, 179, 493, 578
BseMII	CTCAG	1 cut(s)	363
BseRI	GAGGAG	1 cut(s)	204
BseX3I	CGGCCG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	545
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	5 cut(s)	44, 51, 90, 234, 582
BsiEI	CGRYCG	1 cut(s)	235
BsiHKCI	CYCGRG	2 cut(s)	486, 528
BsiSI	CCGG	3 cut(s)	48, 154, 235
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	4 cut(s)	70, 179, 493, 578
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	5 cut(s)	44, 51, 90, 234, 582
BsoBI	CYCGRG	2 cut(s)	486, 528
Bsp143I	GATC	1 cut(s)	97
BspACI	CCGC	5 cut(s)	17, 126, 225, 228, 231
BspANI	GGCC	5 cut(s)	44, 51, 90, 234, 582
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	91, 319
BspPI	GGATC	1 cut(s)	105
BspQI	GCTCTTC	1 cut(s)	402
BsrFI	RCCGGY	2 cut(s)	47, 153
BssAI	RCCGGY	2 cut(s)	47, 153
BssECI	CCNNGG	4 cut(s)	92, 93, 338, 453
BssMI	GATC	1 cut(s)	97
BssSI	CACGAG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	94, 656
Bst4CI	ACNGT	1 cut(s)	503
Bst6I	CTCTTC	1 cut(s)	402
BstAPI	GCANNNNNTGC	2 cut(s)	75, 617
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	1 cut(s)	453
BstF5I	GGATG	4 cut(s)	244, 367, 390, 586
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	97
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 125, 154, 231, 617
BstNI	CCWGG	2 cut(s)	94, 656
BstNSI	RCATGY	2 cut(s)	148, 615
BstSCI	CCNGG	3 cut(s)	92, 234, 654
BstV1I	GCAGC	1 cut(s)	545
BstZI	CGGCCG	1 cut(s)	232
BsuI	GTATCC	2 cut(s)	155, 549
BsuRI	GGCC	5 cut(s)	44, 51, 90, 234, 582
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	4 cut(s)	244, 367, 390, 586
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	4 cut(s)	298, 338, 369, 508
CfoI	GCGC	1 cut(s)	299
Cfr10I	RCCGGY	2 cut(s)	47, 153
Cfr13I	GGNCC	5 cut(s)	50, 89, 151, 276, 581
Csp6I	GTAC	3 cut(s)	426, 550, 629
CviAII	CATG	2 cut(s)	145, 612
CviQI	GTAC	3 cut(s)	426, 550, 629
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	232
EagI	CGGCCG	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
EclXI	CGGCCG	1 cut(s)	232
Eco47I	GGWCC	2 cut(s)	151, 276
Eco52I	CGGCCG	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	426
Eco88I	CYCGRG	2 cut(s)	486, 528
EcoO109I	RGGNCCY	2 cut(s)	89, 276
EcoRI	GAATTC	1 cut(s)	523
EcoRII	CCWGG	2 cut(s)	92, 654
EcoT22I	ATGCAT	1 cut(s)	622
FaeI	CATG	2 cut(s)	148, 615
FaiI	YATR	5 cut(s)	146, 443, 445, 483, 613
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	2 cut(s)	144, 611
Fnu4HI	GCNGC	4 cut(s)	226, 229, 232, 534
FokI	GGATG	4 cut(s)	251, 374, 377, 573
Fsp4HI	GCNGC	4 cut(s)	226, 229, 232, 534
FspBI	CTAG	2 cut(s)	20, 174
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	4 cut(s)	226, 229, 232, 534
GsuI	CTGGAG	3 cut(s)	336, 414, 434
HaeIII	GGCC	5 cut(s)	44, 51, 90, 234, 582
HapII	CCGG	3 cut(s)	48, 154, 235
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	2 cut(s)	148, 615
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	3 cut(s)	48, 154, 235
Hpy166II	GTNNAC	2 cut(s)	253, 369
Hpy188I	TCNGA	4 cut(s)	188, 248, 339, 395
Hpy188III	TCNNGA	4 cut(s)	315, 404, 431, 528
Hpy8I	GTNNAC	2 cut(s)	253, 369
Hpy99I	CGWCG	2 cut(s)	119, 479
HpyAV	CCTTC	3 cut(s)	49, 289, 661
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	6 cut(s)	78, 148, 291, 390, 563, 620
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 125, 154, 231, 617
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	2 cut(s)	148, 615
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	97
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	1 cut(s)	317
Lsp1109I	GCAGC	1 cut(s)	545
LweI	GCATC	2 cut(s)	399, 607
MaeI	CTAG	2 cut(s)	20, 174
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	2 cut(s)	466, 503
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	1 cut(s)	419
MluCI	AATT	3 cut(s)	134, 418, 523
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	2 cut(s)	166, 418
MnlI	CCTC	6 cut(s)	21, 27, 182, 333, 484, 594
Mph1103I	ATGCAT	1 cut(s)	622
MseI	TTAA	1 cut(s)	650
MspI	CCGG	3 cut(s)	48, 154, 235
MspR9I	CCNGG	3 cut(s)	94, 236, 656
MvaI	CCWGG	2 cut(s)	94, 656
MwoI	GCNNNNNNNGC	5 cut(s)	75, 125, 154, 231, 617
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	148, 615
NlaIV	GGNNCC	2 cut(s)	91, 319
NmuCI	GTSAC	2 cut(s)	466, 503
NsiI	ATGCAT	1 cut(s)	622
NspI	RCATGY	2 cut(s)	148, 615
PaeR7I	CTCGAG	1 cut(s)	528
PasI	CCCWGGG	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	402
PflMI	CCANNNNNTGG	1 cut(s)	578
PkrI	GCNGC	4 cut(s)	227, 230, 233, 535
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PpuMI	RGGWCCY	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	276
Psp6I	CCWGG	2 cut(s)	92, 654
PspGI	CCWGG	2 cut(s)	92, 654
PspN4I	GGNNCC	2 cut(s)	91, 319
PspPI	GGNCC	5 cut(s)	50, 89, 151, 276, 581
PspPPI	RGGWCCY	1 cut(s)	276
RsaI	GTAC	3 cut(s)	427, 551, 630
RsaNI	GTAC	3 cut(s)	426, 550, 629
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	1 cut(s)	650
SatI	GCNGC	4 cut(s)	226, 229, 232, 534
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	5 cut(s)	50, 89, 151, 276, 581
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	3 cut(s)	94, 236, 656
SfaNI	GCATC	2 cut(s)	399, 607
Sfr274I	CTCGAG	1 cut(s)	528
SinI	GGWCC	2 cut(s)	151, 276
SlaI	CTCGAG	1 cut(s)	528
SmlI	CTYRAG	2 cut(s)	38, 528
SmoI	CTYRAG	2 cut(s)	38, 528
Sse9I	AATT	3 cut(s)	134, 418, 523
SsiI	CCGC	5 cut(s)	17, 126, 225, 228, 231
SspMI	CTAG	2 cut(s)	20, 174
StyD4I	CCNGG	3 cut(s)	92, 234, 654
TaaI	ACNGT	1 cut(s)	503
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	2 cut(s)	474, 529
TasI	AATT	3 cut(s)	134, 418, 523
TatI	WGTACW	2 cut(s)	549, 628
TauI	GCSGC	3 cut(s)	228, 231, 234
Tru1I	TTAA	1 cut(s)	650
Tru9I	TTAA	1 cut(s)	650
TscAI	CASTG	4 cut(s)	298, 338, 376, 508
TseFI	GTSAC	2 cut(s)	466, 503
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	2 cut(s)	466, 503
TspDTI	ATGAA	2 cut(s)	255, 271
TspRI	CASTG	4 cut(s)	298, 338, 376, 508
Van91I	CCANNNNNTGG	1 cut(s)	578
VpaK11BI	GGWCC	2 cut(s)	151, 276
XapI	RAATTY	2 cut(s)	418, 523
XceI	RCATGY	2 cut(s)	148, 615
XhoI	CTCGAG	1 cut(s)	528
XspI	CTAG	2 cut(s)	20, 174
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.