Rmu_ssc0000255.1_g000061
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000255.1
OG0023024
Physical Location & Seq
Reverse (-)
324342 .. 327079
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000255.1_g000061.1.cds

Sequence Viewer

Length: 477 bp
atgggggagagccacaacaacctccaccaccgcacaacaacggccaccggccggaaggaccgccacagcaaggtttgcaccactaaaggctatcggctcgtcgcccacactgccattcaattctatgacatgcaggaccggcttggatatgaccggcctagcaaggccgtcgattggaggggagaaaaccaaatcatccgtttgagattacagagtgctagttggaggttgaagaggggtgaaagcagcggggcttccggagaaattcctcagcagataaagcagcttacatccctctcatatgtcaacgtttctcccaacaatctcacaggctccataccacaagggtgccaatttaatacgttcaagaggacttcatttgagggaacccgggattgtgtggagaaccattgccaaagaaatgtggaaatgctaagactgcaactccacgccaccctcaagcatagatggagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

158

Amino Acids

18.17

Weight (kDa)

10.03

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023024)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co7961776.1_g000001 Rmu_sc0000082.1_g000087 Rmu_sc0000507.1_g000009 Rmu_ssc0000255.1_g000061

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 348
AccIII TCCGGA 1 cut(s) 257
AciI CCGC 3 cut(s) 31, 61, 249
AclI AACGTT 1 cut(s) 309
AcoI YGGCCR 2 cut(s) 42, 49
AcsI RAATTY 1 cut(s) 264
AfiI CCNNNNNNNGG 3 cut(s) 51, 70, 174
AgsI TTSAA 3 cut(s) 119, 232, 367
AleI CACNNNNGTG 1 cut(s) 346
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
Ama87I CYCGRG 1 cut(s) 390
Aor13HI TCCGGA 1 cut(s) 257
AoxI GGCC 4 cut(s) 42, 49, 155, 165
ApeKI GCWGC 2 cut(s) 246, 283
ApoI RAATTY 1 cut(s) 264
AspS9I GGNCC 2 cut(s) 58, 136
AsuC2I CCSGG 2 cut(s) 391, 392
AsuHPI GGTGA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 390
AvaII GGWCC 2 cut(s) 58, 136
BanI GGYRCC 1 cut(s) 348
BbvCI CCTCAGC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 258, 295
BccI CCATC 1 cut(s) 462
BceAI ACGGC 2 cut(s) 57, 152
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BcnI CCSGG 2 cut(s) 391, 392
BfaI CTAG 2 cut(s) 159, 219
BisI GCNGC 2 cut(s) 247, 284
BlsI GCNGC 2 cut(s) 248, 285
Bme1390I CCNGG 2 cut(s) 391, 392
Bme18I GGWCC 2 cut(s) 58, 136
BmeT110I CYCGRG 1 cut(s) 390
BmgT120I GGNCC 2 cut(s) 58, 136
BmiI GGNNCC 3 cut(s) 334, 350, 388
BmrFI CCNGG 2 cut(s) 391, 392
Bpu10I CCTNAGC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 2 cut(s) 391, 392
BsaJI CCNNGG 1 cut(s) 390
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 70, 174
Bse118I RCCGGY 3 cut(s) 47, 138, 153
Bse3DI GCAATG 1 cut(s) 409
BseAI TCCGGA 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 2 cut(s) 195, 290
BseLI CCNNNNNNNGG 3 cut(s) 51, 70, 174
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 1 cut(s) 284
BseX3I CGGCCG 1 cut(s) 49
BseXI GCAGC 2 cut(s) 258, 295
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 4 cut(s) 44, 51, 157, 167
BshNI GGYRCC 1 cut(s) 348
BsiEI CGRYCG 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 6 cut(s) 48, 52, 139, 154, 258, 391
BslI CCNNNNNNNGG 3 cut(s) 51, 70, 174
BsnI GGCC 4 cut(s) 44, 51, 157, 167
BsoBI CYCGRG 1 cut(s) 390
Bsp13I TCCGGA 1 cut(s) 257
BspACI CCGC 3 cut(s) 31, 61, 249
BspANI GGCC 4 cut(s) 44, 51, 157, 167
BspCNI CTCAG 1 cut(s) 283
BspEI TCCGGA 1 cut(s) 257
BspLI GGNNCC 3 cut(s) 334, 350, 388
BspT107I GGYRCC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 409
BsrFI RCCGGY 3 cut(s) 47, 138, 153
BssAI RCCGGY 3 cut(s) 47, 138, 153
BssECI CCNNGG 1 cut(s) 390
Bst6I CTCTTC 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 270, 434
BstF5I GGATG 2 cut(s) 195, 290
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 5 cut(s) 75, 110, 139, 280, 439
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 2 cut(s) 389, 390
BstV1I GCAGC 2 cut(s) 258, 295
BstZI CGGCCG 1 cut(s) 49
BsuRI GGCC 4 cut(s) 44, 51, 157, 167
BtsCI GGATG 2 cut(s) 195, 290
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
Cfr10I RCCGGY 3 cut(s) 47, 138, 153
Cfr13I GGNCC 2 cut(s) 58, 136
Cfr9I CCCGGG 1 cut(s) 390
CviAII CATG 1 cut(s) 130
DdeI CTNAG 2 cut(s) 270, 434
EaeI YGGCCR 2 cut(s) 42, 49
EagI CGGCCG 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EclXI CGGCCG 1 cut(s) 49
Eco47I GGWCC 2 cut(s) 58, 136
Eco52I CGGCCG 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 390
FaeI CATG 1 cut(s) 133
FaiI YATR 7 cut(s) 126, 131, 150, 301, 303, 338, 465
FatI CATG 1 cut(s) 129
FauI CCCGC 1 cut(s) 242
FauNDI CATATG 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 247, 284
FokI GGATG 2 cut(s) 182, 277
Fsp4HI GCNGC 2 cut(s) 247, 284
FspBI CTAG 2 cut(s) 159, 219
GluI GCNGC 2 cut(s) 247, 284
HaeIII GGCC 4 cut(s) 44, 51, 157, 167
HapII CCGG 6 cut(s) 48, 52, 139, 154, 258, 391
Hin1II CATG 1 cut(s) 133
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HpaII CCGG 6 cut(s) 48, 52, 139, 154, 258, 391
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 307
Hpy188III TCNNGA 2 cut(s) 258, 367
Hpy8I GTNNAC 1 cut(s) 307
Hpy99I CGWCG 2 cut(s) 104, 173
HpyAV CCTTC 1 cut(s) 49
HpyCH4IV ACGT 2 cut(s) 309, 362
HpyCH4V TGCA 3 cut(s) 78, 133, 442
HpyF10VI GCNNNNNNNGC 5 cut(s) 75, 110, 139, 280, 439
HpyF3I CTNAG 2 cut(s) 270, 434
HpySE526I ACGT 2 cut(s) 309, 362
Hsp92II CATG 1 cut(s) 133
Kpn2I TCCGGA 1 cut(s) 257
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 8 cut(s) 61, 65, 119, 152, 167, 271, 315, 404
Lsp1109I GCAGC 2 cut(s) 258, 295
MaeI CTAG 2 cut(s) 159, 219
MaeII ACGT 2 cut(s) 309, 362
MboII GAAGA 1 cut(s) 244
MluCI AATT 3 cut(s) 119, 264, 353
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 9 cut(s) 32, 171, 219, 228, 279, 305, 363, 376, 467
MroI TCCGGA 1 cut(s) 257
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 346
MspA1I CMGCKG 1 cut(s) 249
MspI CCGG 6 cut(s) 48, 52, 139, 154, 258, 391
MspR9I CCNGG 2 cut(s) 391, 392
MwoI GCNNNNNNNGC 5 cut(s) 75, 110, 139, 280, 439
NciI CCSGG 2 cut(s) 391, 392
NdeI CATATG 1 cut(s) 301
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 3 cut(s) 334, 350, 388
NspI RCATGY 1 cut(s) 133
OliI CACNNNNGTG 1 cut(s) 346
PkrI GCNGC 2 cut(s) 248, 285
Psp1406I AACGTT 1 cut(s) 309
PspN4I GGNNCC 3 cut(s) 334, 350, 388
PspPI GGNCC 2 cut(s) 58, 136
RseI CAYNNNNRTG 1 cut(s) 346
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 2 cut(s) 247, 284
Sau96I GGNCC 2 cut(s) 58, 136
ScrFI CCNGG 2 cut(s) 391, 392
SetI ASST 6 cut(s) 24, 75, 230, 288, 312, 365
SinI GGWCC 2 cut(s) 58, 136
SmaI CCCGGG 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 3 cut(s) 119, 264, 353
SsiI CCGC 3 cut(s) 31, 61, 249
SspMI CTAG 2 cut(s) 159, 219
StyD4I CCNGG 2 cut(s) 389, 390
TaiI ACGT 2 cut(s) 312, 365
TaqI TCGA 1 cut(s) 171
TasI AATT 3 cut(s) 119, 264, 353
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 115
TseI GCWGC 2 cut(s) 246, 283
TspDTI ATGAA 1 cut(s) 366
TspGWI ACGGA 1 cut(s) 188
TspMI CCCGGG 1 cut(s) 390
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 2 cut(s) 58, 136
XapI RAATTY 1 cut(s) 264
XceI RCATGY 1 cut(s) 133
XmaI CCCGGG 1 cut(s) 390
XspI CTAG 2 cut(s) 159, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.