Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000604.1

Orthogroup ID

OG0010900

Physical Location & Seq

Genomic Coordinates Reverse (-)

15471 .. 17489

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000604.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgatcacaaccagagctccaatggccctcaccccatgccctcacctcgtccacctcccacttcactcttcatcctcttcctcttcctcttcctcttcctctcacctcttcttcttatcccaatcgccgtcttctccgccgccgattgccctgcgaatcagcgatgtctccgccgcgttctctccggcgaagctgtcgtcggcgagagccaagtgcttcaaatccgcgaccgaggaggaccgcttcagcgagccggagaccgtctccgacgacgaagctggagatcgcgataatgttaagaccgcgtcgacggcgaccggtggatcgttgaacgttacgacgtcgttcaccggtgactctctgtttctcgggattcgcgagccggtctacgaggtggaagaagtgaaggctaatgggacgatatctattagaaaaattaacaggcgtcagctactgaagtcaagtggtcttcgtccacgtgatatccgaagtgttgatccttcattgtttctgacaaattcgatgccttctttgctggtccgcgagcgtgctcttctgttaaatttggggtcattacgtgcaattgcaatgcaagagcgtgtccttatatttgactacaaccgttatggggctatgtcaagtcttttgtttttctttcaaattgcaggtatatttggcatgaacttaagatcctatcttgaagaacatgtgttcgcattttggtttacgacagctgggataattgttggtgctgttgtgggattttatctaatgtattcatatctcaagacgcgaaaaatattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006996 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009657 GO:0009668 GO:0009941 GO:0009987 GO:0010027 GO:0010117 GO:0010960 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016043 GO:0022857 GO:0022890 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055080 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0070838 GO:0071840 GO:0072507 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

268

Amino Acids

29.48

Weight (kDa)

9.3

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22830 AT5G22830
fragaria_vesca	FvH4_3g30160 FvH4_3g30160 FvH4_3g30160
malus_domestica	MD03G1131000.v1.1 MD11G1153500.v1.1
prunus_persica	Prupe.6G116100_v2.0.a1
pyrus_communis	pycom11g12530
rosa_chinensis	RchiOBHm_Chr5g0055951
rosa_laevigata	RLG00000035036
rosa_multiflora	Rmu_sc0000604.1_g000004 Rmu_sc0014108.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024350
rosa_rugosa	Rorug05G0296400
rosa_samantha	Rh5AG367700 Rh5BG378000 Rh5CG401300 Rh5DG391100
rosa_wichuraiana	Rw5G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	656
AccI	GTMKAC	2 cut(s)	308, 387
AccII	CGCG	7 cut(s)	176, 227, 288, 305, 378, 543, 793
AciI	CCGC	8 cut(s)	137, 140, 171, 174, 225, 241, 303, 541
AclI	AACGTT	1 cut(s)	333
AclWI	GGATC	3 cut(s)	331, 491, 684
AcsI	RAATTY	2 cut(s)	517, 562
AcuI	CTGAAG	2 cut(s)	229, 476
AcvI	CACGTG	1 cut(s)	479
AcyI	GRCGYC	2 cut(s)	341, 445
AfiI	CCNNNNNNNGG	1 cut(s)	628
AflII	CTTAAG	1 cut(s)	685
AflIII	ACRYGT	1 cut(s)	706
AgeI	ACCGGT	2 cut(s)	317, 350
AgsI	TTSAA	4 cut(s)	220, 331, 659, 701
AloI	GAACNNNNNNTCC	2 cut(s)	674, 706
AluBI	AGCT	5 cut(s)	17, 193, 278, 451, 734
AluI	AGCT	5 cut(s)	17, 193, 278, 451, 734
Alw21I	GWGCWC	2 cut(s)	19, 553
Alw26I	GTCTC	3 cut(s)	172, 251, 268
AlwI	GGATC	3 cut(s)	331, 491, 684
AlwNI	CAGNNNCTG	1 cut(s)	454
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	1 cut(s)	24
ApoI	RAATTY	2 cut(s)	517, 562
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AsiGI	ACCGGT	2 cut(s)	317, 350
AspS9I	GGNCC	3 cut(s)	25, 238, 538
AsuHPI	GGTGA	5 cut(s)	22, 35, 95, 340, 365
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	2 cut(s)	238, 538
BanII	GRGCYC	1 cut(s)	19
BbrPI	CACGTG	1 cut(s)	479
BbsI	GAAGAC	2 cut(s)	123, 461
Bbv12I	GWGCWC	2 cut(s)	19, 553
BceAI	ACGGC	2 cut(s)	112, 327
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	3 cut(s)	172, 251, 268
BfrI	CTTAAG	1 cut(s)	685
BfuAI	ACCTGC	1 cut(s)	656
BisI	GCNGC	2 cut(s)	140, 174
BlsI	GCNGC	2 cut(s)	141, 175
Bme18I	GGWCC	2 cut(s)	238, 538
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	3 cut(s)	25, 238, 538
BmsI	GCATC	1 cut(s)	513
BpiI	GAAGAC	2 cut(s)	123, 461
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
BpmI	CTGGAG	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	770
BsaAI	YACGTR	2 cut(s)	479, 578
BsaHI	GRCGYC	2 cut(s)	341, 445
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	2 cut(s)	317, 350
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse118I	RCCGGY	3 cut(s)	317, 350, 382
Bse3DI	GCAATG	1 cut(s)	594
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMI	GCAATG	1 cut(s)	594
BseRI	GAGGAG	1 cut(s)	248
BseYI	CCCAGC	1 cut(s)	734
Bsh1236I	CGCG	7 cut(s)	176, 227, 288, 305, 378, 543, 793
Bsh1285I	CGRYCG	2 cut(s)	231, 318
BshFI	GGCC	1 cut(s)	26
BshTI	ACCGGT	2 cut(s)	317, 350
BsiEI	CGRYCG	2 cut(s)	231, 318
BsiHKAI	GWGCWC	2 cut(s)	19, 553
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	5 cut(s)	185, 254, 318, 351, 383
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	3 cut(s)	172, 251, 268
BsmBI	CGTCTC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	26
Bso31I	GGTCTC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	2 cut(s)	19, 553
Bsp143I	GATC	5 cut(s)	3, 283, 323, 496, 689
Bsp68I	TCGCGA	2 cut(s)	288, 378
BspACI	CCGC	8 cut(s)	137, 140, 171, 174, 225, 241, 303, 541
BspANI	GGCC	1 cut(s)	26
BspFNI	CGCG	7 cut(s)	176, 227, 288, 305, 378, 543, 793
BspMI	ACCTGC	1 cut(s)	656
BspPI	GGATC	3 cut(s)	331, 491, 684
BspQI	GCTCTTC	1 cut(s)	558
BspTI	CTTAAG	1 cut(s)	685
BspTNI	GGTCTC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	594
BsrFI	RCCGGY	3 cut(s)	317, 350, 382
BssAI	RCCGGY	3 cut(s)	317, 350, 382
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	5 cut(s)	3, 283, 323, 496, 689
BssNI	GRCGYC	2 cut(s)	341, 445
Bst4CI	ACNGT	2 cut(s)	262, 623
Bst6I	CTCTTC	7 cut(s)	73, 82, 88, 94, 100, 113, 558
BstACI	GRCGYC	2 cut(s)	341, 445
BstAFI	CTTAAG	1 cut(s)	685
BstBAI	YACGTR	2 cut(s)	479, 578
BstC8I	GCNNGC	4 cut(s)	251, 380, 545, 549
BstF5I	GGATG	1 cut(s)	71
BstFNI	CGCG	7 cut(s)	176, 227, 288, 305, 378, 543, 793
BstKTI	GATC	5 cut(s)	6, 286, 326, 499, 692
BstMAI	GTCTC	3 cut(s)	172, 251, 268
BstMBI	GATC	5 cut(s)	3, 283, 323, 496, 689
BstMCI	CGRYCG	2 cut(s)	231, 318
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 311, 532
BstNSI	RCATGY	1 cut(s)	710
BstUI	CGCG	7 cut(s)	176, 227, 288, 305, 378, 543, 793
BstV2I	GAAGAC	2 cut(s)	123, 461
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
BsuRI	GGCC	1 cut(s)	26
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	71
BtuMI	TCGCGA	2 cut(s)	288, 378
BveI	ACCTGC	1 cut(s)	656
Cac8I	GCNNGC	4 cut(s)	251, 380, 545, 549
CaiI	CAGNNNCTG	1 cut(s)	454
Cfr10I	RCCGGY	3 cut(s)	317, 350, 382
Cfr13I	GGNCC	3 cut(s)	25, 238, 538
CseI	GACGC	3 cut(s)	294, 434, 799
CspAI	ACCGGT	2 cut(s)	317, 350
CviAII	CATG	3 cut(s)	36, 679, 707
DpnI	GATC	5 cut(s)	5, 285, 325, 498, 691
DpnII	GATC	5 cut(s)	3, 283, 323, 496, 689
Eam1104I	CTCTTC	7 cut(s)	73, 82, 88, 94, 100, 113, 558
EarI	CTCTTC	7 cut(s)	73, 82, 88, 94, 100, 113, 558
EciI	GGCGGA	2 cut(s)	126, 160
Ecl136II	GAGCTC	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	251
Eco32I	GATATC	2 cut(s)	423, 484
Eco47I	GGWCC	2 cut(s)	238, 538
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	2 cut(s)	229, 476
Eco72I	CACGTG	1 cut(s)	479
Eco88I	CYCGRG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	17
EcoRV	GATATC	2 cut(s)	423, 484
EcoT38I	GRGCYC	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	268
FaeI	CATG	3 cut(s)	39, 682, 710
FaiI	YATR	8 cut(s)	37, 608, 627, 635, 671, 680, 708, 781
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	3 cut(s)	35, 678, 706
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	308, 387
Fnu4HI	GCNGC	2 cut(s)	140, 174
FokI	GGATG	1 cut(s)	58
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	2 cut(s)	140, 174
GluI	GCNGC	2 cut(s)	140, 174
GsaI	CCCAGC	1 cut(s)	738
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	5 cut(s)	185, 254, 318, 351, 383
HgaI	GACGC	3 cut(s)	294, 434, 799
Hin1I	GRCGYC	2 cut(s)	341, 445
Hin1II	CATG	3 cut(s)	39, 682, 710
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	3 cut(s)	156, 356, 373
HpaII	CCGG	5 cut(s)	185, 254, 318, 351, 383
HphI	GGTGA	5 cut(s)	22, 35, 95, 340, 365
Hpy166II	GTNNAC	6 cut(s)	52, 309, 348, 388, 476, 726
Hpy188I	TCNGA	3 cut(s)	268, 488, 513
Hpy188III	TCNNGA	5 cut(s)	287, 370, 377, 698, 787
Hpy8I	GTNNAC	6 cut(s)	52, 309, 348, 388, 476, 726
Hpy99I	CGWCG	7 cut(s)	202, 272, 275, 310, 313, 343, 346
HpyAV	CCTTC	3 cut(s)	400, 510, 537
HpyCH4III	ACNGT	2 cut(s)	262, 623
HpyCH4IV	ACGT	4 cut(s)	333, 341, 478, 577
HpyCH4V	TGCA	4 cut(s)	581, 587, 592, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 311, 532
HpySE526I	ACGT	4 cut(s)	333, 341, 478, 577
Hsp92I	GRCGYC	2 cut(s)	341, 445
Hsp92II	CATG	3 cut(s)	39, 682, 710
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 283, 323, 496, 689
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	1 cut(s)	22
LweI	GCATC	1 cut(s)	513
MaeII	ACGT	4 cut(s)	333, 341, 478, 577
MaeIII	GTNAC	2 cut(s)	334, 353
MalI	GATC	5 cut(s)	5, 285, 325, 498, 691
MboI	GATC	5 cut(s)	3, 283, 323, 496, 689
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	1 cut(s)	689
MhlI	GDGCHC	2 cut(s)	19, 553
MluCI	AATT	6 cut(s)	435, 517, 562, 582, 660, 741
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	291
MseI	TTAA	4 cut(s)	297, 438, 560, 686
MspA1I	CMGCKG	1 cut(s)	734
MspCI	CTTAAG	1 cut(s)	685
MspI	CCGG	5 cut(s)	185, 254, 318, 351, 383
MunI	CAATTG	1 cut(s)	582
MvnI	CGCG	7 cut(s)	176, 227, 288, 305, 378, 543, 793
MwoI	GCNNNNNNNGC	3 cut(s)	23, 311, 532
NdeII	GATC	5 cut(s)	3, 283, 323, 496, 689
NlaIII	CATG	3 cut(s)	39, 682, 710
NmuCI	GTSAC	1 cut(s)	353
NruI	TCGCGA	2 cut(s)	288, 378
NspI	RCATGY	1 cut(s)	710
PciI	ACATGT	1 cut(s)	706
PciSI	GCTCTTC	1 cut(s)	558
PcsI	WCGNNNNNNNCGW	2 cut(s)	375, 484
PfeI	GAWTC	2 cut(s)	156, 373
PflFI	GACNNNGTC	1 cut(s)	304
PinAI	ACCGGT	2 cut(s)	317, 350
PkrI	GCNGC	2 cut(s)	141, 175
PleI	GAGTC	1 cut(s)	350
PmaCI	CACGTG	1 cut(s)	479
PmlI	CACGTG	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	350
Ppu21I	YACGTR	2 cut(s)	479, 578
PscI	ACATGT	1 cut(s)	706
Psp124BI	GAGCTC	1 cut(s)	19
Psp1406I	AACGTT	1 cut(s)	333
PspCI	CACGTG	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	734
PspPI	GGNCC	3 cut(s)	25, 238, 538
PstNI	CAGNNNCTG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	689
PsyI	GACNNNGTC	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	734
RruI	TCGCGA	2 cut(s)	288, 378
SacI	GAGCTC	1 cut(s)	19
SalI	GTCGAC	1 cut(s)	307
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	4 cut(s)	297, 438, 560, 686
SatI	GCNGC	2 cut(s)	140, 174
Sau3AI	GATC	5 cut(s)	3, 283, 323, 496, 689
Sau96I	GGNCC	3 cut(s)	25, 238, 538
SchI	GAGTC	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	19, 553
SfaNI	GCATC	1 cut(s)	513
SgrAI	CRCCGGYG	1 cut(s)	350
SgrDI	CGTCGACG	1 cut(s)	307
SinI	GGWCC	2 cut(s)	238, 538
SmlI	CTYRAG	2 cut(s)	685, 785
SmoI	CTYRAG	2 cut(s)	685, 785
Sse9I	AATT	6 cut(s)	435, 517, 562, 582, 660, 741
SsiI	CCGC	8 cut(s)	137, 140, 171, 174, 225, 241, 303, 541
SspI	AATATT	1 cut(s)	801
SstI	GAGCTC	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	262, 623
TaiI	ACGT	4 cut(s)	336, 344, 481, 580
TaqI	TCGA	2 cut(s)	308, 521
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	6 cut(s)	435, 517, 562, 582, 660, 741
TauI	GCSGC	2 cut(s)	142, 176
TfiI	GAWTC	2 cut(s)	156, 373
Tru1I	TTAA	4 cut(s)	297, 438, 560, 686
Tru9I	TTAA	4 cut(s)	297, 438, 560, 686
TseFI	GTSAC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	4 cut(s)	60, 492, 695, 768
Tth111I	GACNNNGTC	1 cut(s)	304
Vha464I	CTTAAG	1 cut(s)	685
VpaK11BI	GGWCC	2 cut(s)	238, 538
XapI	RAATTY	2 cut(s)	517, 562
XceI	RCATGY	1 cut(s)	710
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XmiI	GTMKAC	2 cut(s)	308, 387
ZraI	GACGTC	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.