Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010900

Physical Location & Seq

Genomic Coordinates Forward (+)

53387150 .. 53392325

Gene Structure 5176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG401300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGATCACAACCAGAGCTCCAATGGCTCTCACCCCATGCCCTCACCTCTTCCACCTCCCACTTCACTCTTCATCCTCTTCCTCTTCCTCTCACCTCTTCTTCTTCTCCCAATCGCCGTCTTCTCCGCCGCCGATTGCCCTGCGAATCAGCGATGTCTCCGCCGCGTTCTCTCCGGCGAAGCTCTCGTCGGCGAGAGCCAAGTGCTTCAAATCCGCGACCGAGGAGGACCGCTTCAGCGAGCCGGAGACCGTCTCCGACGACGAAGCTGGAGATCGCGATAATGTTAAGACCGCGTCGACGGCGACCGGTGGATCGCTGAACGTTACGACGTCGTTCACCGGTGACTCTCTGTCTCTCGGGATTCGCGAGCCGGTCTACGAGGTGGAAGAAGTGAAGGCTAATGGGACGATATCTATTAGAAAAATTAACAGGCGTCAGCTACTGAAGTCAAGTGGTCTTCGTCCACGTGATATCCGAAGTGTTGACCCTTCATTATTTCTGACAAATTCGATGCCTTCTTTGCTGGTCCGCGAGCATGCTCTTCTGTTAAATTTGGGGTCATTACGTGCAATTGCAATGAAAGAGCGTGTCCTTATATTTGACTACAACCGTAAAGGAGGAAAAGCTTTCATAGAAGCACTACTGCCTCGACTGAACCCCAAAAATATGAATGGAGGACCATCTATGCCATTTGAACTTGAGGTTCTTGAAGCAGCATTGCTCTCAAGAATACAGCGCTTGGAACGAAGATTAATGGATTTAGAACCTCGTGTTCAAAATATTCTAGCAGTTTTGCCCAACAAGTTAACTGCTGACATACTGGAGCAACTTCGTATCAGCAAGCAAACCTTGGTTGAATTGGGATCAAGGGCTGGGGCTCTTAGACAAATGTTGTTTGATCTTTTGGAGGACCCCGAAGAAATACGGCGTATATGTATTATGGGAAGAAACTGCACACTCAAGAGGGGAAGTGATGATGTTGAATGCTCTGTTCCTTTAGAGAAGCAGATTGCTGAGGAAGAAGAGGAAGAAATTGAGATGCTTTTGGAAAATTATCTTCAAAGATGTGAATCTTGCCATGGCCAGGCTGAAAGGCTTCTTGATTCTGCTAAAGAAATGGAAGATTCTATAGCTGTTAACTTGAGTTCTCGGAGGCTTGAGGTTAGCAGAGTGGAATTGCTCCTTCAGGTTGGGACCTTTTGTGTGGCACTGGGTGCTCTGGTTGCAGGTATATTTGGCATGAACTTGAGATCTTATCTTGAAGAACATGTGTTCGCATTTTGGCTTACAACAGCTGGGATAATTGTTGGTGCTGTTGTGGGATTTTATCTAATGTATTCATATCTCAAGACACGAAAAATATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006996 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009657 GO:0009668 GO:0009941 GO:0009987 GO:0010027 GO:0010117 GO:0010960 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016043 GO:0022857 GO:0022890 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055080 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0070838 GO:0071840 GO:0072507 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

455

Amino Acids

50.57

Weight (kDa)

6.09

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	136 - 385	4.5e-37	Magnesium transporter MRS2-like
CorA	PF01544	266 - 443	5e-06	CorA-like Mg2+ transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22830 AT5G22830
fragaria_vesca	FvH4_3g30160 FvH4_3g30160 FvH4_3g30160
malus_domestica	MD03G1131000.v1.1 MD11G1153500.v1.1
prunus_persica	Prupe.6G116100_v2.0.a1
pyrus_communis	pycom11g12530
rosa_chinensis	RchiOBHm_Chr5g0055951
rosa_laevigata	RLG00000035036
rosa_multiflora	Rmu_sc0000604.1_g000004 Rmu_sc0014108.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024350
rosa_rugosa	Rorug05G0296400
rosa_samantha	Rh5AG367700 Rh5BG378000 Rh5CG401300 Rh5DG391100
rosa_wichuraiana	Rw5G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	1217
AccI	GTMKAC	2 cut(s)	296, 375
AccII	CGCG	6 cut(s)	164, 215, 276, 293, 366, 531
AciI	CCGC	8 cut(s)	125, 128, 159, 162, 213, 229, 291, 529
AclI	AACGTT	1 cut(s)	321
AclWI	GGATC	2 cut(s)	319, 871
AcoI	YGGCCR	1 cut(s)	1081
AcsI	RAATTY	2 cut(s)	505, 550
AcuI	CTGAAG	3 cut(s)	217, 464, 1169
AcvI	CACGTG	1 cut(s)	467
AcyI	GRCGYC	2 cut(s)	329, 433
AdeI	CACNNNGTG	1 cut(s)	1214
AfeI	AGCGCT	1 cut(s)	737
AfiI	CCNNNNNNNGG	1 cut(s)	1084
AflIII	ACRYGT	1 cut(s)	1267
AgeI	ACCGGT	2 cut(s)	305, 338
AgsI	TTSAA	8 cut(s)	208, 695, 710, 776, 857, 983, 1061, 1262
AhdI	GACNNNNNGTC	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	1083
AluBI	AGCT	7 cut(s)	17, 181, 266, 439, 626, 1133, 1295
AluI	AGCT	7 cut(s)	17, 181, 266, 439, 626, 1133, 1295
Alw21I	GWGCWC	2 cut(s)	19, 1219
Alw26I	GTCTC	4 cut(s)	160, 239, 256, 357
AlwI	GGATC	2 cut(s)	319, 871
AlwNI	CAGNNNCTG	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	356
Aor51HI	AGCGCT	1 cut(s)	737
AoxI	GGCC	1 cut(s)	1081
ApeKI	GCWGC	1 cut(s)	713
ApoI	RAATTY	2 cut(s)	505, 550
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AseI	ATTAAT	1 cut(s)	752
AsiGI	ACCGGT	2 cut(s)	305, 338
Asp700I	GAANNNNTTC	1 cut(s)	1095
AspLEI	GCGC	1 cut(s)	738
AspS9I	GGNCC	5 cut(s)	226, 526, 677, 910, 1194
AsuHPI	GGTGA	5 cut(s)	22, 35, 83, 328, 353
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	5 cut(s)	226, 526, 677, 910, 1194
BalI	TGGCCA	1 cut(s)	1083
BanII	GRGCYC	2 cut(s)	19, 880
BauI	CACGAG	1 cut(s)	768
BbrPI	CACGTG	1 cut(s)	467
BbsI	GAAGAC	2 cut(s)	111, 449
Bbv12I	GWGCWC	2 cut(s)	19, 1219
BbvCI	CCTCAGC	1 cut(s)	1014
BbvI	GCAGC	1 cut(s)	725
BccI	CCATC	1 cut(s)	688
BceAI	ACGGC	3 cut(s)	100, 315, 941
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	1 cut(s)	1085
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	4 cut(s)	160, 239, 256, 357
BfaI	CTAG	1 cut(s)	785
BfmI	CTRYAG	1 cut(s)	1128
BfoI	RGCGCY	1 cut(s)	739
BfuAI	ACCTGC	1 cut(s)	1217
BglII	AGATCT	1 cut(s)	1250
BisI	GCNGC	3 cut(s)	128, 162, 714
BlsI	GCNGC	3 cut(s)	129, 163, 715
Bme1390I	CCNGG	1 cut(s)	1085
Bme18I	GGWCC	5 cut(s)	226, 526, 677, 910, 1194
BmeRI	GACNNNNNGTC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	5 cut(s)	226, 526, 677, 910, 1194
BmiI	GGNNCC	2 cut(s)	912, 1195
BmrFI	CCNGG	1 cut(s)	1085
BmrI	ACTGGG	1 cut(s)	1220
BmsI	GCATC	2 cut(s)	501, 1029
BmuI	ACTGGG	1 cut(s)	1220
BpiI	GAAGAC	2 cut(s)	111, 449
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
BpmI	CTGGAG	2 cut(s)	288, 842
Bpu10I	CCTNAGC	1 cut(s)	1014
BpuEI	CTTGAG	7 cut(s)	709, 719, 944, 1162, 1178, 1267, 1331
BsaAI	YACGTR	2 cut(s)	467, 566
BsaBI	GATNNNNATC	1 cut(s)	1069
BsaHI	GRCGYC	2 cut(s)	329, 433
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	219, 849, 1078
BsaWI	WCCGGW	2 cut(s)	305, 338
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	1084
Bse118I	RCCGGY	3 cut(s)	305, 338, 370
Bse1I	ACTGG	2 cut(s)	825, 1215
Bse3DI	GCAATG	2 cut(s)	582, 716
Bse8I	GATNNNNATC	1 cut(s)	1069
BseBI	CCWGG	1 cut(s)	1085
BseDI	CCNNGG	3 cut(s)	219, 849, 1078
BseGI	GGATG	1 cut(s)	71
BseJI	GATNNNNATC	1 cut(s)	1069
BseLI	CCNNNNNNNGG	1 cut(s)	1084
BseMI	GCAATG	2 cut(s)	582, 716
BseMII	CTCAG	1 cut(s)	1005
BseNI	ACTGG	2 cut(s)	825, 1215
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	725
BseYI	CCCAGC	2 cut(s)	872, 1295
BsgI	GTGCAG	1 cut(s)	937
Bsh1236I	CGCG	6 cut(s)	164, 215, 276, 293, 366, 531
Bsh1285I	CGRYCG	2 cut(s)	219, 306
BshFI	GGCC	1 cut(s)	1083
BshTI	ACCGGT	2 cut(s)	305, 338
BsiEI	CGRYCG	2 cut(s)	219, 306
BsiHKAI	GWGCWC	2 cut(s)	19, 1219
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	5 cut(s)	173, 242, 306, 339, 371
BslFI	GGGAC	2 cut(s)	418, 1207
BslI	CCNNNNNNNGG	1 cut(s)	1084
BsmAI	GTCTC	4 cut(s)	160, 239, 256, 357
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	2 cut(s)	418, 1207
BsmI	GAATGC	1 cut(s)	989
BsnI	GGCC	1 cut(s)	1083
Bso31I	GGTCTC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	3 cut(s)	19, 880, 1219
Bsp143I	GATC	6 cut(s)	3, 271, 311, 863, 898, 1250
Bsp19I	CCATGG	1 cut(s)	1078
Bsp68I	TCGCGA	2 cut(s)	276, 366
BspACI	CCGC	8 cut(s)	125, 128, 159, 162, 213, 229, 291, 529
BspANI	GGCC	1 cut(s)	1083
BspCNI	CTCAG	1 cut(s)	1006
BspFNI	CGCG	6 cut(s)	164, 215, 276, 293, 366, 531
BspLI	GGNNCC	2 cut(s)	912, 1195
BspMI	ACCTGC	1 cut(s)	1217
BspPI	GGATC	2 cut(s)	319, 871
BspQI	GCTCTTC	1 cut(s)	546
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	2 cut(s)	582, 716
BsrFI	RCCGGY	3 cut(s)	305, 338, 370
BsrI	ACTGG	2 cut(s)	825, 1215
BssAI	RCCGGY	3 cut(s)	305, 338, 370
BssECI	CCNNGG	3 cut(s)	219, 849, 1078
BssMI	GATC	6 cut(s)	3, 271, 311, 863, 898, 1250
BssNI	GRCGYC	2 cut(s)	329, 433
BssSI	CACGAG	1 cut(s)	768
BssT1I	CCWWGG	2 cut(s)	849, 1078
Bst2BI	CACGAG	1 cut(s)	768
Bst2UI	CCWGG	1 cut(s)	1085
Bst4CI	ACNGT	2 cut(s)	250, 611
Bst6I	CTCTTC	7 cut(s)	53, 73, 82, 88, 101, 546, 1017
BstACI	GRCGYC	2 cut(s)	329, 433
BstAPI	GCANNNNNTGC	1 cut(s)	1214
BstBAI	YACGTR	2 cut(s)	467, 566
BstC8I	GCNNGC	5 cut(s)	239, 368, 533, 537, 842
BstDEI	CTNAG	2 cut(s)	881, 1014
BstDSI	CCRYGG	1 cut(s)	1078
BstF5I	GGATG	1 cut(s)	71
BstFNI	CGCG	6 cut(s)	164, 215, 276, 293, 366, 531
BstH2I	RGCGCY	1 cut(s)	739
BstHHI	GCGC	1 cut(s)	738
BstKTI	GATC	6 cut(s)	6, 274, 314, 866, 901, 1253
BstMAI	GTCTC	4 cut(s)	160, 239, 256, 357
BstMBI	GATC	6 cut(s)	3, 271, 311, 863, 898, 1250
BstMCI	CGRYCG	2 cut(s)	219, 306
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 299, 520, 1214, 1223
BstNI	CCWGG	1 cut(s)	1085
BstNSI	RCATGY	2 cut(s)	539, 1271
BstSCI	CCNGG	1 cut(s)	1083
BstSFI	CTRYAG	1 cut(s)	1128
BstUI	CGCG	6 cut(s)	164, 215, 276, 293, 366, 531
BstV1I	GCAGC	1 cut(s)	725
BstV2I	GAAGAC	2 cut(s)	111, 449
BstX2I	RGATCY	1 cut(s)	1250
BstYI	RGATCY	1 cut(s)	1250
BsuRI	GGCC	1 cut(s)	1083
BtgI	CCRYGG	1 cut(s)	1078
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	1208
BtuMI	TCGCGA	2 cut(s)	276, 366
BveI	ACCTGC	1 cut(s)	1217
Cac8I	GCNNGC	5 cut(s)	239, 368, 533, 537, 842
CaiI	CAGNNNCTG	1 cut(s)	442
CfoI	GCGC	1 cut(s)	738
Cfr10I	RCCGGY	3 cut(s)	305, 338, 370
Cfr13I	GGNCC	5 cut(s)	226, 526, 677, 910, 1194
CseI	GACGC	2 cut(s)	282, 422
CspAI	ACCGGT	2 cut(s)	305, 338
CviAII	CATG	5 cut(s)	36, 536, 1079, 1240, 1268
DdeI	CTNAG	2 cut(s)	881, 1014
DpnI	GATC	6 cut(s)	5, 273, 313, 865, 900, 1252
DpnII	GATC	6 cut(s)	3, 271, 311, 863, 898, 1250
DraIII	CACNNNGTG	1 cut(s)	1214
DriI	GACNNNNNGTC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	1081
Eam1104I	CTCTTC	7 cut(s)	53, 73, 82, 88, 101, 546, 1017
Eam1105I	GACNNNNNGTC	1 cut(s)	349
EarI	CTCTTC	7 cut(s)	53, 73, 82, 88, 101, 546, 1017
EciI	GGCGGA	2 cut(s)	114, 148
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	849, 1078
Eco24I	GRGCYC	2 cut(s)	19, 880
Eco31I	GGTCTC	1 cut(s)	239
Eco32I	GATATC	2 cut(s)	411, 472
Eco47I	GGWCC	5 cut(s)	226, 526, 677, 910, 1194
Eco47III	AGCGCT	1 cut(s)	737
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	3 cut(s)	217, 464, 1169
Eco72I	CACGTG	1 cut(s)	467
Eco88I	CYCGRG	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	17
EcoO109I	RGGNCCY	2 cut(s)	910, 1194
EcoRII	CCWGG	1 cut(s)	1083
EcoRV	GATATC	2 cut(s)	411, 472
EcoT14I	CCWWGG	2 cut(s)	849, 1078
EcoT38I	GRGCYC	2 cut(s)	19, 880
ErhI	CCWWGG	2 cut(s)	849, 1078
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	5 cut(s)	39, 539, 1082, 1243, 1271
FalI	AAGNNNNNCTT	2 cut(s)	833, 865
FaqI	GGGAC	2 cut(s)	418, 1207
FatI	CATG	5 cut(s)	35, 535, 1078, 1239, 1267
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	296, 375
Fnu4HI	GCNGC	3 cut(s)	128, 162, 714
FokI	GGATG	1 cut(s)	58
FriOI	GRGCYC	2 cut(s)	19, 880
Fsp4HI	GCNGC	3 cut(s)	128, 162, 714
FspBI	CTAG	1 cut(s)	785
GlaI	GCGC	1 cut(s)	737
GluI	GCNGC	3 cut(s)	128, 162, 714
GsaI	CCCAGC	2 cut(s)	876, 1299
GsuI	CTGGAG	2 cut(s)	288, 842
HaeII	RGCGCY	1 cut(s)	739
HaeIII	GGCC	1 cut(s)	1083
HapII	CCGG	5 cut(s)	173, 242, 306, 339, 371
HgaI	GACGC	2 cut(s)	282, 422
HhaI	GCGC	1 cut(s)	738
Hin1I	GRCGYC	2 cut(s)	329, 433
Hin1II	CATG	5 cut(s)	39, 539, 1082, 1243, 1271
Hin6I	GCGC	1 cut(s)	736
HinP1I	GCGC	1 cut(s)	736
HincII	GTYRAC	4 cut(s)	297, 484, 807, 1138
HindII	GTYRAC	4 cut(s)	297, 484, 807, 1138
HindIII	AAGCTT	1 cut(s)	624
HinfI	GANTC	6 cut(s)	144, 344, 361, 1070, 1103, 1124
HpaI	GTTAAC	2 cut(s)	807, 1138
HpaII	CCGG	5 cut(s)	173, 242, 306, 339, 371
HphI	GGTGA	5 cut(s)	22, 35, 83, 328, 353
Hpy166II	GTNNAC	7 cut(s)	297, 336, 376, 464, 484, 807, 1138
Hpy188I	TCNGA	4 cut(s)	256, 476, 501, 1152
Hpy188III	TCNNGA	9 cut(s)	275, 358, 365, 707, 726, 961, 1100, 1259, 1348
Hpy8I	GTNNAC	7 cut(s)	297, 336, 376, 464, 484, 807, 1138
Hpy99I	CGWCG	7 cut(s)	190, 260, 263, 298, 301, 331, 334
HpyAV	CCTTC	4 cut(s)	388, 498, 525, 1193
HpyCH4III	ACNGT	2 cut(s)	250, 611
HpyCH4IV	ACGT	4 cut(s)	321, 329, 466, 565
HpyCH4V	TGCA	4 cut(s)	569, 575, 954, 1226
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 299, 520, 1214, 1223
HpyF3I	CTNAG	2 cut(s)	881, 1014
HpySE526I	ACGT	4 cut(s)	321, 329, 466, 565
Hsp92I	GRCGYC	2 cut(s)	329, 433
Hsp92II	CATG	5 cut(s)	39, 539, 1082, 1243, 1271
HspAI	GCGC	1 cut(s)	736
Ksp22I	TGATCA	1 cut(s)	3
KspAI	GTTAAC	2 cut(s)	807, 1138
Kzo9I	GATC	6 cut(s)	3, 271, 311, 863, 898, 1250
LguI	GCTCTTC	1 cut(s)	546
LmnI	GCTCC	3 cut(s)	22, 823, 1185
Lsp1109I	GCAGC	1 cut(s)	725
LweI	GCATC	2 cut(s)	501, 1029
MaeI	CTAG	1 cut(s)	785
MaeII	ACGT	4 cut(s)	321, 329, 466, 565
MaeIII	GTNAC	2 cut(s)	322, 341
MalI	GATC	6 cut(s)	5, 273, 313, 865, 900, 1252
MboI	GATC	6 cut(s)	3, 271, 311, 863, 898, 1250
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	1250
MhlI	GDGCHC	3 cut(s)	19, 880, 1219
MlsI	TGGCCA	1 cut(s)	1083
MluCI	AATT	9 cut(s)	423, 505, 550, 570, 857, 1032, 1051, 1175, 1302
MluNI	TGGCCA	1 cut(s)	1083
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	279
Mox20I	TGGCCA	1 cut(s)	1083
MroXI	GAANNNNTTC	1 cut(s)	1095
MscI	TGGCCA	1 cut(s)	1083
MseI	TTAA	6 cut(s)	285, 426, 548, 752, 806, 1137
Msp20I	TGGCCA	1 cut(s)	1083
MspA1I	CMGCKG	1 cut(s)	1295
MspI	CCGG	5 cut(s)	173, 242, 306, 339, 371
MspR9I	CCNGG	1 cut(s)	1085
MunI	CAATTG	1 cut(s)	570
Mva1269I	GAATGC	1 cut(s)	989
MvaI	CCWGG	1 cut(s)	1085
MvnI	CGCG	6 cut(s)	164, 215, 276, 293, 366, 531
MwoI	GCNNNNNNNGC	5 cut(s)	23, 299, 520, 1214, 1223
NcoI	CCATGG	1 cut(s)	1078
NdeII	GATC	6 cut(s)	3, 271, 311, 863, 898, 1250
NlaIII	CATG	5 cut(s)	39, 539, 1082, 1243, 1271
NlaIV	GGNNCC	2 cut(s)	912, 1195
NmuCI	GTSAC	1 cut(s)	341
NruI	TCGCGA	2 cut(s)	276, 366
NspI	RCATGY	2 cut(s)	539, 1271
PaeI	GCATGC	1 cut(s)	539
PciI	ACATGT	1 cut(s)	1267
PciSI	GCTCTTC	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	2 cut(s)	363, 472
PctI	GAATGC	1 cut(s)	989
PdmI	GAANNNNTTC	1 cut(s)	1095
PfeI	GAWTC	5 cut(s)	144, 361, 1070, 1103, 1124
PflFI	GACNNNGTC	1 cut(s)	292
PinAI	ACCGGT	2 cut(s)	305, 338
PkrI	GCNGC	3 cut(s)	129, 163, 715
PleI	GAGTC	1 cut(s)	338
PmaCI	CACGTG	1 cut(s)	467
PmlI	CACGTG	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	338
Ppu21I	YACGTR	2 cut(s)	467, 566
PpuMI	RGGWCCY	2 cut(s)	910, 1194
PscI	ACATGT	1 cut(s)	1267
PshBI	ATTAAT	1 cut(s)	752
Psp124BI	GAGCTC	1 cut(s)	19
Psp1406I	AACGTT	1 cut(s)	321
Psp5II	RGGWCCY	2 cut(s)	910, 1194
Psp6I	CCWGG	1 cut(s)	1083
PspCI	CACGTG	1 cut(s)	467
PspFI	CCCAGC	2 cut(s)	872, 1295
PspGI	CCWGG	1 cut(s)	1083
PspN4I	GGNNCC	2 cut(s)	912, 1195
PspPI	GGNCC	5 cut(s)	226, 526, 677, 910, 1194
PspPPI	RGGWCCY	2 cut(s)	910, 1194
PstNI	CAGNNNCTG	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	1250
PsyI	GACNNNGTC	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	1295
RruI	TCGCGA	2 cut(s)	276, 366
SacI	GAGCTC	1 cut(s)	19
SalI	GTCGAC	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	546
SaqAI	TTAA	6 cut(s)	285, 426, 548, 752, 806, 1137
SatI	GCNGC	3 cut(s)	128, 162, 714
Sau3AI	GATC	6 cut(s)	3, 271, 311, 863, 898, 1250
Sau96I	GGNCC	5 cut(s)	226, 526, 677, 910, 1194
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	1085
SduI	GDGCHC	3 cut(s)	19, 880, 1219
SfaNI	GCATC	2 cut(s)	501, 1029
SfcI	CTRYAG	1 cut(s)	1128
SgrAI	CRCCGGYG	1 cut(s)	338
SgrDI	CGTCGACG	1 cut(s)	295
SinI	GGWCC	5 cut(s)	226, 526, 677, 910, 1194
SmlI	CTYRAG	7 cut(s)	698, 724, 959, 1141, 1157, 1246, 1346
SmoI	CTYRAG	7 cut(s)	698, 724, 959, 1141, 1157, 1246, 1346
SphI	GCATGC	1 cut(s)	539
Sse9I	AATT	9 cut(s)	423, 505, 550, 570, 857, 1032, 1051, 1175, 1302
SsiI	CCGC	8 cut(s)	125, 128, 159, 162, 213, 229, 291, 529
SspI	AATATT	2 cut(s)	781, 1362
SspMI	CTAG	1 cut(s)	785
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	1083
StyI	CCWWGG	2 cut(s)	849, 1078
TaaI	ACNGT	2 cut(s)	250, 611
TaiI	ACGT	4 cut(s)	324, 332, 469, 568
TaqI	TCGA	3 cut(s)	296, 509, 649
TaqII	GACCGA	1 cut(s)	233
TasI	AATT	9 cut(s)	423, 505, 550, 570, 857, 1032, 1051, 1175, 1302
TauI	GCSGC	2 cut(s)	130, 164
TfiI	GAWTC	5 cut(s)	144, 361, 1070, 1103, 1124
Tru1I	TTAA	6 cut(s)	285, 426, 548, 752, 806, 1137
Tru9I	TTAA	6 cut(s)	285, 426, 548, 752, 806, 1137
TscAI	CASTG	1 cut(s)	1215
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	1 cut(s)	713
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	7 cut(s)	60, 480, 593, 619, 683, 1256, 1329
TspRI	CASTG	1 cut(s)	1215
Tth111I	GACNNNGTC	1 cut(s)	292
VpaK11BI	GGWCC	5 cut(s)	226, 526, 677, 910, 1194
VspI	ATTAAT	1 cut(s)	752
XapI	RAATTY	2 cut(s)	505, 550
XceI	RCATGY	2 cut(s)	539, 1271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XmiI	GTMKAC	2 cut(s)	296, 375
XmnI	GAANNNNTTC	1 cut(s)	1095
XspI	CTAG	1 cut(s)	785
ZraI	GACGTC	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.