Rmu_sc0000670.1_g000027

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000670.1
OG0023052
Physical Location & Seq
Forward (+)
106174 .. 107225
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000670.1_g000027.1.cds

Sequence Viewer

Length: 969 bp
atgcttgactcaacgggctcggaataccatagctgggtaaccgacgttgagaaccatctcacttcaagagggatattgcccataatccaggcaccaaactcggaactcatatttgagcgcactactgttaggcatgctcaagcactcatcttgatgcgacgtcatatggacaaatcactccgtttggagtacatgtcgatcaaggatgcaagagagttatgggtagcactagaaaagctctttggcaatgtccaagattccctcctccctgacttgaaggtacaatggaacaatctacatgtcaccgacttcaaatctgttgctgaatacaattcagaagctctacgcctcaaatccatgttgagattctgtggacagcctatcatagagcaagagctacttgagaaaactctctccatcttccctgtctcagcaatcttggtatcaaagcaatatagaaacgaatacaatgctggacgaatcacgaggtttaataagctaatcaatgttatgtctatagctgagaaacatgacaacatcctcgtgaagaattataattcaatgcccattgaaactaagagcgttcacgaggcgaattataatgcacccaaagaatggcgcaaggagcggaaccctaaaattaagggacaaagtggacgtgtgggtccatatgaccgccctaacaaggaaaccgccaatttggagcgggatcacgtggtggcaatgccacatgtgggagaggttgtggtggcgccgccggccgtggtggtggcgtcaatccccctaggggacgtgcacaaggcaagcaacaagctagctgcacaatacaaggcatatagggacttgagggagcaagaagcctatcttgctgaagaagaagatgatggtgaagacaatgacgtcaatctcaccatagtggacttcaaagctggagatgaagtgctcaaggatgctgcagactttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

322

Amino Acids

36.72

Weight (kDa)

5.75

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023052)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000670.1_g000027 Rmu_sc0007873.1_g000022 Rmu_sc0008809.1_g000001 Rmu_sc0009745.1_g000013

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 555, 600
AasI GACNNNNNNGTC 2 cut(s) 663, 899
AatII GACGTC 2 cut(s) 163, 903
AccB1I GGYRCC 2 cut(s) 91, 751
AccB7I CCANNNNNTGG 1 cut(s) 615
AccBSI CCGCTC 2 cut(s) 628, 706
AciI CCGC 5 cut(s) 628, 676, 693, 706, 755
AclWI GGATC 1 cut(s) 717
AcoI YGGCCR 1 cut(s) 759
AcuI CTGAAG 1 cut(s) 891
AcvI CACGTG 1 cut(s) 715
AcyI GRCGYC 4 cut(s) 160, 752, 773, 900
AdeI CACNNNGTG 1 cut(s) 718
AfaI GTAC 2 cut(s) 191, 282
AfiI CCNNNNNNNGG 5 cut(s) 34, 615, 685, 734, 787
AflIII ACRYGT 4 cut(s) 192, 298, 658, 730
AgsI TTSAA 6 cut(s) 66, 277, 313, 561, 572, 925
AjiI CACGTC 2 cut(s) 659, 793
AjnI CCWGG 1 cut(s) 87
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AleI CACNNNNGTG 1 cut(s) 914
AluBI AGCT 9 cut(s) 33, 238, 341, 397, 499, 521, 814, 818, 929
AluI AGCT 9 cut(s) 33, 238, 341, 397, 499, 521, 814, 818, 929
Alw21I GWGCWC 2 cut(s) 798, 945
Alw26I GTCTC 1 cut(s) 433
Alw44I GTGCAC 1 cut(s) 794
AlwI GGATC 1 cut(s) 717
AoxI GGCC 1 cut(s) 759
ApaLI GTGCAC 1 cut(s) 794
ApeKI GCWGC 2 cut(s) 818, 953
AspA2I CCTAGG 1 cut(s) 784
AspLEI GCGC 3 cut(s) 120, 621, 754
AspS9I GGNCC 1 cut(s) 665
AsuHPI GGTGA 3 cut(s) 295, 899, 901
AsuNHI GCTAGC 1 cut(s) 814
AvaII GGWCC 1 cut(s) 665
AvrII CCTAGG 1 cut(s) 784
BaeGI GKGCMC 1 cut(s) 798
BanI GGYRCC 2 cut(s) 91, 751
BanII GRGCYC 1 cut(s) 20
BauI CACGAG 3 cut(s) 484, 542, 587
BbrPI CACGTG 1 cut(s) 715
BbsI GAAGAC 1 cut(s) 897
Bbv12I GWGCWC 2 cut(s) 798, 945
BbvI GCAGC 2 cut(s) 805, 940
BccI CCATC 3 cut(s) 63, 425, 878
BceAI ACGGC 1 cut(s) 746
BcgI CGANNNNNNTGC 4 cut(s) 81, 115, 452, 486
BciT130I CCWGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 433
BfaI CTAG 3 cut(s) 230, 785, 815
BfmI CTRYAG 2 cut(s) 516, 954
BfoI RGCGCY 1 cut(s) 755
BisI GCNGC 3 cut(s) 755, 819, 954
BlnI CCTAGG 1 cut(s) 784
BlsI GCNGC 3 cut(s) 756, 820, 955
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 665
BmgBI CACGTC 2 cut(s) 659, 793
BmgT120I GGNCC 1 cut(s) 665
BmiI GGNNCC 4 cut(s) 93, 632, 666, 753
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 3 cut(s) 144, 196, 940
BmtI GCTAGC 1 cut(s) 818
BpiI GAAGAC 1 cut(s) 897
BpmI CTGGAG 1 cut(s) 951
BpuEI CTTGAG 4 cut(s) 123, 422, 865, 929
BsaAI YACGTR 1 cut(s) 715
BsaHI GRCGYC 4 cut(s) 160, 752, 773, 900
BsaJI CCNNGG 2 cut(s) 762, 784
BsaXI ACNNNNNCTCC 6 cut(s) 179, 209, 729, 759, 924, 954
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 615, 685, 734, 787
Bse118I RCCGGY 1 cut(s) 757
Bse3DI GCAATG 2 cut(s) 253, 729
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 2 cut(s) 762, 784
BseGI GGATG 3 cut(s) 211, 537, 955
BseLI CCNNNNNNNGG 5 cut(s) 34, 615, 685, 734, 787
BseMI GCAATG 2 cut(s) 253, 729
BseMII CTCAG 2 cut(s) 444, 513
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 798
BseX3I CGGCCG 1 cut(s) 759
BseXI GCAGC 2 cut(s) 805, 940
BseYI CCCAGC 1 cut(s) 33
BsgI GTGCAG 1 cut(s) 804
Bsh1285I CGRYCG 1 cut(s) 762
BshFI GGCC 1 cut(s) 761
BshNI GGYRCC 2 cut(s) 91, 751
BsiEI CGRYCG 1 cut(s) 762
BsiHKAI GWGCWC 2 cut(s) 798, 945
BsiSI CCGG 1 cut(s) 758
BslFI GGGAC 3 cut(s) 660, 803, 854
BslI CCNNNNNNNGG 5 cut(s) 34, 615, 685, 734, 787
BsmAI GTCTC 1 cut(s) 433
BsmFI GGGAC 3 cut(s) 660, 803, 854
BsnI GGCC 1 cut(s) 761
Bsp1286I GDGCHC 3 cut(s) 20, 798, 945
Bsp143I GATC 2 cut(s) 198, 709
BspACI CCGC 5 cut(s) 628, 676, 693, 706, 755
BspANI GGCC 1 cut(s) 761
BspCNI CTCAG 2 cut(s) 443, 514
BspLI GGNNCC 4 cut(s) 93, 632, 666, 753
BspMAI CTGCAG 1 cut(s) 958
BspOI GCTAGC 1 cut(s) 818
BspPI GGATC 1 cut(s) 717
BspT107I GGYRCC 2 cut(s) 91, 751
BsrBI CCGCTC 2 cut(s) 628, 706
BsrDI GCAATG 2 cut(s) 253, 729
BsrFI RCCGGY 1 cut(s) 757
BssAI RCCGGY 1 cut(s) 757
BssECI CCNNGG 2 cut(s) 762, 784
BssMI GATC 2 cut(s) 198, 709
BssNI GRCGYC 4 cut(s) 160, 752, 773, 900
BssSI CACGAG 3 cut(s) 484, 542, 587
BssT1I CCWWGG 1 cut(s) 784
Bst2BI CACGAG 3 cut(s) 484, 542, 587
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 127
BstACI GRCGYC 4 cut(s) 160, 752, 773, 900
BstBAI YACGTR 1 cut(s) 715
BstC8I GCNNGC 4 cut(s) 135, 759, 805, 816
BstDEI CTNAG 3 cut(s) 430, 522, 576
BstDSI CCRYGG 1 cut(s) 762
BstEII GGTNACC 1 cut(s) 37
BstF5I GGATG 3 cut(s) 211, 537, 955
BstH2I RGCGCY 1 cut(s) 755
BstHHI GCGC 3 cut(s) 120, 621, 754
BstKTI GATC 2 cut(s) 201, 712
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 2 cut(s) 198, 709
BstMCI CGRYCG 1 cut(s) 762
BstMWI GCNNNNNNNGC 3 cut(s) 625, 758, 866
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 4 cut(s) 137, 196, 302, 734
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 2 cut(s) 516, 954
BstSLI GKGCMC 1 cut(s) 798
BstV1I GCAGC 2 cut(s) 805, 940
BstV2I GAAGAC 1 cut(s) 897
BstZI CGGCCG 1 cut(s) 759
BsuRI GGCC 1 cut(s) 761
BtgI CCRYGG 1 cut(s) 762
BtrI CACGTC 2 cut(s) 659, 793
BtsCI GGATG 3 cut(s) 211, 537, 955
Cac8I GCNNGC 4 cut(s) 135, 759, 805, 816
CfoI GCGC 3 cut(s) 120, 621, 754
Cfr10I RCCGGY 1 cut(s) 757
Cfr13I GGNCC 1 cut(s) 665
CseI GACGC 1 cut(s) 762
Csp6I GTAC 2 cut(s) 190, 281
CviAII CATG 6 cut(s) 134, 193, 299, 358, 530, 731
CviQI GTAC 2 cut(s) 190, 281
DdeI CTNAG 3 cut(s) 430, 522, 576
DinI GGCGCC 1 cut(s) 753
DpnI GATC 2 cut(s) 200, 711
DpnII GATC 2 cut(s) 198, 709
DraIII CACNNNGTG 1 cut(s) 718
DrdI GACNNNNNNGTC 2 cut(s) 663, 899
DseDI GACNNNNNNGTC 2 cut(s) 663, 899
EaeI YGGCCR 1 cut(s) 759
EagI CGGCCG 1 cut(s) 759
EclXI CGGCCG 1 cut(s) 759
Eco130I CCWWGG 1 cut(s) 784
Eco24I GRGCYC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 665
Eco52I CGGCCG 1 cut(s) 759
Eco57I CTGAAG 1 cut(s) 891
Eco72I CACGTG 1 cut(s) 715
Eco91I GGTNACC 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 784
EcoT38I GRGCYC 1 cut(s) 20
EgeI GGCGCC 1 cut(s) 753
EheI GGCGCC 1 cut(s) 753
ErhI CCWWGG 1 cut(s) 784
FaeI CATG 6 cut(s) 137, 196, 302, 361, 533, 734
FalI AAGNNNNNCTT 4 cut(s) 384, 416, 849, 881
FaqI GGGAC 3 cut(s) 660, 803, 854
FatI CATG 6 cut(s) 133, 192, 298, 357, 529, 730
FauI CCCGC 1 cut(s) 699
FauNDI CATATG 2 cut(s) 165, 670
Fnu4HI GCNGC 3 cut(s) 755, 819, 954
FokI GGATG 3 cut(s) 218, 524, 962
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 3 cut(s) 755, 819, 954
FspBI CTAG 3 cut(s) 230, 785, 815
GlaI GCGC 3 cut(s) 119, 620, 753
GluI GCNGC 3 cut(s) 755, 819, 954
GsaI CCCAGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 951
HaeII RGCGCY 1 cut(s) 755
HaeIII GGCC 1 cut(s) 761
HapII CCGG 1 cut(s) 758
HgaI GACGC 1 cut(s) 762
HhaI GCGC 3 cut(s) 120, 621, 754
Hin1I GRCGYC 4 cut(s) 160, 752, 773, 900
Hin1II CATG 6 cut(s) 137, 196, 302, 361, 533, 734
Hin6I GCGC 3 cut(s) 118, 619, 752
HinP1I GCGC 3 cut(s) 118, 619, 752
HinfI GANTC 4 cut(s) 8, 257, 366, 480
HpaII CCGG 1 cut(s) 758
HphI GGTGA 3 cut(s) 295, 899, 901
Hpy166II GTNNAC 5 cut(s) 374, 586, 656, 796, 919
Hpy188I TCNGA 3 cut(s) 22, 103, 337
Hpy188III TCNNGA 5 cut(s) 66, 151, 484, 544, 587
Hpy8I GTNNAC 5 cut(s) 374, 586, 656, 796, 919
Hpy99I CGWCG 2 cut(s) 47, 162
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 6 cut(s) 45, 160, 658, 714, 792, 900
HpyCH4V TGCA 5 cut(s) 209, 605, 796, 821, 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 625, 758, 866
HpyF3I CTNAG 3 cut(s) 430, 522, 576
HpySE526I ACGT 6 cut(s) 45, 160, 658, 714, 792, 900
Hsp92I GRCGYC 4 cut(s) 160, 752, 773, 900
Hsp92II CATG 6 cut(s) 137, 196, 302, 361, 533, 734
HspAI GCGC 3 cut(s) 118, 619, 752
KasI GGCGCC 1 cut(s) 751
KroI GCCGGC 1 cut(s) 757
KroNI GCCGGC 1 cut(s) 759
Kzo9I GATC 2 cut(s) 198, 709
LmnI GCTCC 3 cut(s) 625, 703, 850
LpnPI CCDG 8 cut(s) 19, 74, 101, 282, 438, 459, 771, 915
Lsp1109I GCAGC 2 cut(s) 805, 940
LweI GCATC 3 cut(s) 144, 196, 940
MaeI CTAG 3 cut(s) 230, 785, 815
MaeII ACGT 6 cut(s) 45, 160, 658, 714, 792, 900
MaeIII GTNAC 2 cut(s) 37, 301
MalI GATC 2 cut(s) 200, 711
MbiI CCGCTC 2 cut(s) 628, 706
MboI GATC 2 cut(s) 198, 709
MboII GAAGA 6 cut(s) 412, 559, 884, 887, 890, 902
MhlI GDGCHC 3 cut(s) 20, 798, 945
MluCI AATT 6 cut(s) 331, 550, 556, 595, 639, 697
Mly113I GGCGCC 1 cut(s) 752
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 9 cut(s) 62, 272, 275, 359, 480, 551, 583, 733, 840
MroNI GCCGGC 1 cut(s) 757
MseI TTAA 2 cut(s) 492, 642
MslI CAYNNNNRTG 3 cut(s) 152, 542, 914
MspI CCGG 1 cut(s) 758
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 3 cut(s) 625, 758, 866
NaeI GCCGGC 1 cut(s) 759
NarI GGCGCC 1 cut(s) 752
NdeI CATATG 2 cut(s) 165, 670
NdeII GATC 2 cut(s) 198, 709
NgoMIV GCCGGC 1 cut(s) 757
NheI GCTAGC 1 cut(s) 814
NlaIII CATG 6 cut(s) 137, 196, 302, 361, 533, 734
NlaIV GGNNCC 4 cut(s) 93, 632, 666, 753
NmuCI GTSAC 1 cut(s) 301
NspI RCATGY 4 cut(s) 137, 196, 302, 734
OliI CACNNNNGTG 1 cut(s) 914
PaeI GCATGC 1 cut(s) 137
PciI ACATGT 3 cut(s) 192, 298, 730
PdiI GCCGGC 1 cut(s) 759
PfeI GAWTC 3 cut(s) 257, 366, 480
PflMI CCANNNNNTGG 1 cut(s) 615
PkrI GCNGC 3 cut(s) 756, 820, 955
PleI GAGTC 1 cut(s) 2
PluTI GGCGCC 1 cut(s) 755
PmaCI CACGTG 1 cut(s) 715
PmlI CACGTG 1 cut(s) 715
PpsI GAGTC 1 cut(s) 2
Ppu21I YACGTR 1 cut(s) 715
PscI ACATGT 3 cut(s) 192, 298, 730
PsiI TTATAA 2 cut(s) 555, 600
Psp6I CCWGG 1 cut(s) 87
PspCI CACGTG 1 cut(s) 715
PspEI GGTNACC 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 33
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 4 cut(s) 93, 632, 666, 753
PspPI GGNCC 1 cut(s) 665
PstI CTGCAG 1 cut(s) 958
RsaI GTAC 2 cut(s) 191, 282
RsaNI GTAC 2 cut(s) 190, 281
RseI CAYNNNNRTG 3 cut(s) 152, 542, 914
SaqAI TTAA 2 cut(s) 492, 642
SatI GCNGC 3 cut(s) 755, 819, 954
Sau3AI GATC 2 cut(s) 198, 709
Sau96I GGNCC 1 cut(s) 665
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 3 cut(s) 20, 798, 945
SfaNI GCATC 3 cut(s) 144, 196, 940
SfcI CTRYAG 2 cut(s) 516, 954
SfoI GGCGCC 1 cut(s) 753
SinI GGWCC 1 cut(s) 665
SmiMI CAYNNNNRTG 3 cut(s) 152, 542, 914
SmlI CTYRAG 4 cut(s) 138, 401, 844, 944
SmoI CTYRAG 4 cut(s) 138, 401, 844, 944
SphI GCATGC 1 cut(s) 137
Sse9I AATT 6 cut(s) 331, 550, 556, 595, 639, 697
SsiI CCGC 5 cut(s) 628, 676, 693, 706, 755
SspDI GGCGCC 1 cut(s) 751
SspMI CTAG 3 cut(s) 230, 785, 815
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 784
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 6 cut(s) 48, 163, 661, 717, 795, 903
TaqI TCGA 1 cut(s) 197
TasI AATT 6 cut(s) 331, 550, 556, 595, 639, 697
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 757
TfiI GAWTC 3 cut(s) 257, 366, 480
Tru1I TTAA 2 cut(s) 492, 642
Tru9I TTAA 2 cut(s) 492, 642
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 2 cut(s) 818, 953
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 951
TspGWI ACGGA 1 cut(s) 170
Van91I CCANNNNNTGG 1 cut(s) 615
VneI GTGCAC 1 cut(s) 794
VpaK11BI GGWCC 1 cut(s) 665
XceI RCATGY 4 cut(s) 137, 196, 302, 734
XmaJI CCTAGG 1 cut(s) 784
XspI CTAG 3 cut(s) 230, 785, 815
ZraI GACGTC 2 cut(s) 161, 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.