Rmu_sc0007873.1_g000022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007873.1
OG0023052
Physical Location & Seq
Reverse (-)
83282 .. 83998
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007873.1_g000022.1.cds

Sequence Viewer

Length: 717 bp
atgtcgaatgaaccaagacttgactttcccatgcttgactccacaggctcagaataccatagctgggtcaccgacgttgagaaccatctcacttcaagagggatattacccataatttgggcaccaaacccggagctcatatttgatcgtacgcctactaggcatgctcaagctctcatcctaatgcgacgtcacatggataaatcactccgaatggattacatgtcaatcaaggatgcaagagaattatgggtggcgctagaaaagcgttttggaaacatccaagattccttcctcccgaacttaaaggttcaatggaacaatctgcatgtagccgacttcaagtgtgttgctgaatataattcagaagttctacacctcaaacccatgttgggattctgtggacaacctgtcacagagcaagagctaattgagaaaactctctccaccttccccgtctcagcaattttggtatcaaagcaatatagaggtgaatacaatgttggacggatcacgatgttcaatcagctaatcattgttatgtctatggctgaaaaacatgataacattctcgtgaagaattataattcaaggcccgttggaactaagagcattcacgaggcgaattataatgcacccaaagaagagcgcaaggagcggaaccctaagaataagggacataatagacttatgggctcatatgaccgccctaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

238

Amino Acids

27.67

Weight (kDa)

8.97

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023052)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000670.1_g000027 Rmu_sc0007873.1_g000022 Rmu_sc0008809.1_g000001 Rmu_sc0009745.1_g000013

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 585, 630
AatII GACGTC 1 cut(s) 193
AccB1I GGYRCC 1 cut(s) 121
AccB7I CCANNNNNTGG 1 cut(s) 117
AccBSI CCGCTC 1 cut(s) 658
AciI CCGC 2 cut(s) 658, 706
AclWI GGATC 1 cut(s) 518
AcyI GRCGYC 1 cut(s) 190
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 3 cut(s) 64, 117, 392
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 5 cut(s) 96, 314, 343, 523, 591
AhdI GACNNNNNGTC 1 cut(s) 410
AjuI GAANNNNNNNTTGG 4 cut(s) 255, 287, 486, 518
AluBI AGCT 5 cut(s) 63, 136, 173, 427, 529
AluI AGCT 5 cut(s) 63, 136, 173, 427, 529
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 463
AlwI GGATC 1 cut(s) 518
AoxI GGCC 1 cut(s) 593
AspLEI GCGC 2 cut(s) 259, 651
AspS9I GGNCC 1 cut(s) 594
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 61, 503
BaeGI GKGCMC 1 cut(s) 124
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 2 cut(s) 138, 698
BauI CACGAG 2 cut(s) 572, 617
Bbv12I GWGCWC 1 cut(s) 138
BccI CCATC 1 cut(s) 93
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 463
BfaI CTAG 2 cut(s) 159, 260
BfoI RGCGCY 1 cut(s) 260
BglI GCCNNNNNGGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 131
BmeRI GACNNNNNGTC 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 594
BmiI GGNNCC 2 cut(s) 123, 662
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 190
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 117, 392
BseGI GGATG 3 cut(s) 177, 241, 279
BseLI CCNNNNNNNGG 3 cut(s) 64, 117, 392
BseMII CTCAG 2 cut(s) 63, 474
BseSI GKGCMC 1 cut(s) 124
BseYI CCCAGC 1 cut(s) 63
BshFI GGCC 1 cut(s) 595
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 1 cut(s) 131
BsiWI CGTACG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 690
BslI CCNNNNNNNGG 3 cut(s) 64, 117, 392
BsmAI GTCTC 1 cut(s) 463
BsmBI CGTCTC 1 cut(s) 463
BsmFI GGGAC 1 cut(s) 690
BsmI GAATGC 1 cut(s) 612
BsnI GGCC 1 cut(s) 595
Bsp1286I GDGCHC 3 cut(s) 124, 138, 698
Bsp143I GATC 2 cut(s) 145, 510
BspACI CCGC 2 cut(s) 658, 706
BspANI GGCC 1 cut(s) 595
BspCNI CTCAG 2 cut(s) 62, 473
BspLI GGNNCC 2 cut(s) 123, 662
BspPI GGATC 1 cut(s) 518
BspQI GCTCTTC 1 cut(s) 639
BspT107I GGYRCC 1 cut(s) 121
BsrBI CCGCTC 1 cut(s) 658
BssMI GATC 2 cut(s) 145, 510
BssNI GRCGYC 1 cut(s) 190
BssSI CACGAG 2 cut(s) 572, 617
Bst2BI CACGAG 2 cut(s) 572, 617
Bst6I CTCTTC 1 cut(s) 639
BstACI GRCGYC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 4 cut(s) 49, 460, 606, 666
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 3 cut(s) 177, 241, 279
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 2 cut(s) 259, 651
BstKTI GATC 2 cut(s) 148, 513
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 2 cut(s) 145, 510
BstMWI GCNNNNNNNGC 3 cut(s) 160, 265, 655
BstNSI RCATGY 3 cut(s) 167, 226, 332
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 595
BtsCI GGATG 3 cut(s) 177, 241, 279
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 2 cut(s) 259, 651
Cfr13I GGNCC 1 cut(s) 594
Csp6I GTAC 1 cut(s) 150
CviAII CATG 7 cut(s) 31, 164, 196, 223, 329, 388, 560
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 4 cut(s) 49, 460, 606, 666
DpnI GATC 2 cut(s) 147, 512
DpnII GATC 2 cut(s) 145, 510
DriI GACNNNNNGTC 1 cut(s) 410
Eam1104I CTCTTC 1 cut(s) 639
Eam1105I GACNNNNNGTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 639
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 2 cut(s) 138, 698
Eco53kI GAGCTC 1 cut(s) 136
Eco91I GGTNACC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 136
EcoO65I GGTNACC 1 cut(s) 67
EcoT38I GRGCYC 2 cut(s) 138, 698
Esp3I CGTCTC 1 cut(s) 463
FaeI CATG 7 cut(s) 34, 167, 199, 226, 332, 391, 563
FaqI GGGAC 1 cut(s) 690
FatI CATG 7 cut(s) 30, 163, 195, 222, 328, 387, 559
FauNDI CATATG 1 cut(s) 700
FokI GGATG 3 cut(s) 164, 248, 266
FriOI GRGCYC 2 cut(s) 138, 698
FspBI CTAG 2 cut(s) 159, 260
GlaI GCGC 2 cut(s) 258, 650
GsaI CCCAGC 1 cut(s) 67
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 1 cut(s) 595
HapII CCGG 1 cut(s) 131
HhaI GCGC 2 cut(s) 259, 651
Hin1I GRCGYC 1 cut(s) 190
Hin1II CATG 7 cut(s) 34, 167, 199, 226, 332, 391, 563
Hin6I GCGC 2 cut(s) 257, 649
HinP1I GCGC 2 cut(s) 257, 649
HinfI GANTC 3 cut(s) 38, 287, 396
HpaII CCGG 1 cut(s) 131
HphI GGTGA 2 cut(s) 61, 503
Hpy166II GTNNAC 1 cut(s) 404
Hpy188I TCNGA 3 cut(s) 52, 212, 367
Hpy188III TCNNGA 5 cut(s) 96, 298, 514, 574, 617
Hpy8I GTNNAC 1 cut(s) 404
Hpy99I CGWCG 2 cut(s) 77, 192
HpyAV CCTTC 2 cut(s) 301, 460
HpyCH4IV ACGT 2 cut(s) 75, 190
HpyCH4V TGCA 3 cut(s) 239, 328, 635
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 265, 655
HpyF3I CTNAG 4 cut(s) 49, 460, 606, 666
HpySE526I ACGT 2 cut(s) 75, 190
Hsp92I GRCGYC 1 cut(s) 190
Hsp92II CATG 7 cut(s) 34, 167, 199, 226, 332, 391, 563
HspAI GCGC 2 cut(s) 257, 649
Kzo9I GATC 2 cut(s) 145, 510
LguI GCTCTTC 1 cut(s) 639
LmnI GCTCC 2 cut(s) 133, 655
LpnPI CCDG 4 cut(s) 30, 49, 144, 423
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 159, 260
MaeII ACGT 2 cut(s) 75, 190
MaeIII GTNAC 3 cut(s) 67, 191, 412
MalI GATC 2 cut(s) 147, 512
MbiI CCGCTC 1 cut(s) 658
MboI GATC 2 cut(s) 145, 510
MboII GAAGA 2 cut(s) 589, 656
MhlI GDGCHC 3 cut(s) 124, 138, 698
MluCI AATT 8 cut(s) 114, 245, 361, 429, 465, 580, 586, 625
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 2 cut(s) 484, 580
MnlI CCTC 5 cut(s) 92, 305, 389, 482, 613
MseI TTAA 1 cut(s) 305
MslI CAYNNNNRTG 3 cut(s) 182, 539, 572
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 612
MwoI GCNNNNNNNGC 3 cut(s) 160, 265, 655
NciI CCSGG 1 cut(s) 131
NdeI CATATG 1 cut(s) 700
NdeII GATC 2 cut(s) 145, 510
NlaIII CATG 7 cut(s) 34, 167, 199, 226, 332, 391, 563
NlaIV GGNNCC 2 cut(s) 123, 662
NmuCI GTSAC 3 cut(s) 67, 191, 412
NspI RCATGY 3 cut(s) 167, 226, 332
PaeI GCATGC 1 cut(s) 167
PciI ACATGT 1 cut(s) 222
PciSI GCTCTTC 1 cut(s) 639
PctI GAATGC 1 cut(s) 612
PfeI GAWTC 2 cut(s) 287, 396
Pfl23II CGTACG 1 cut(s) 149
PflMI CCANNNNNTGG 1 cut(s) 117
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PscI ACATGT 1 cut(s) 222
PsiI TTATAA 2 cut(s) 585, 630
Psp124BI GAGCTC 1 cut(s) 138
PspEI GGTNACC 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 63
PspLI CGTACG 1 cut(s) 149
PspN4I GGNNCC 2 cut(s) 123, 662
PspPI GGNCC 1 cut(s) 594
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
RseI CAYNNNNRTG 3 cut(s) 182, 539, 572
SacI GAGCTC 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 1 cut(s) 305
Sau3AI GATC 2 cut(s) 145, 510
Sau96I GGNCC 1 cut(s) 594
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 3 cut(s) 124, 138, 698
SfaNI GCATC 1 cut(s) 226
SmiMI CAYNNNNRTG 3 cut(s) 182, 539, 572
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 167
Sse9I AATT 8 cut(s) 114, 245, 361, 429, 465, 580, 586, 625
SsiI CCGC 2 cut(s) 658, 706
SspMI CTAG 2 cut(s) 159, 260
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 129
TaiI ACGT 2 cut(s) 78, 193
TaqI TCGA 1 cut(s) 5
TasI AATT 8 cut(s) 114, 245, 361, 429, 465, 580, 586, 625
TfiI GAWTC 2 cut(s) 287, 396
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TseFI GTSAC 3 cut(s) 67, 191, 412
Tsp45I GTSAC 3 cut(s) 67, 191, 412
TspDTI ATGAA 1 cut(s) 24
TspGWI ACGGA 1 cut(s) 523
Van91I CCANNNNNTGG 1 cut(s) 117
XceI RCATGY 3 cut(s) 167, 226, 332
XspI CTAG 2 cut(s) 159, 260
ZraI GACGTC 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.