Rmu_sc0008809.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008809.1
OG0023052
Physical Location & Seq
Forward (+)
54 .. 990
937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008809.1_g000001.1.cds

Sequence Viewer

Length: 681 bp
atgcgatgccacatgggtaaatcactcataatggagtacatggcgatcaaggatgcaagagaactatgggtggtgctagaagagcgctttggtaacatccaagattccctcctcccagacttgaaggttaaatggaacaatctacgcttcattgacttcaagactgtctctgaatacaatttagaatctctacgcctcaaatttgtgttgaggttctgtggacaagacatcacaaaccaagagctaattgagaagagtatctccaccttccacgtcttagcacttctagtatcaaagcaatataaagctgagaaacgtgataacatcctcgtgaagaattataattcaaggcccgttggaactaagagcgttcacgaggtaactaacaaactggagtgggatcacgtggcaacaacgccacacttgggagagcaggacgtggcgccgccgcccatggtaaagccaccatgggccgtggtggtggtgtcaacccctttagcggaccaatgtgacgcaagcaacaagttagctgcacattataaagcatatagagaagcaagggagcaagaggcataccttgccgcagaagaagaagatggtgatgacactgatgtcgacctcaccatagcggacttcaaatctagagaagaagtgcacaagaatgccacagattttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

226

Amino Acids

25.98

Weight (kDa)

5.34

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023052)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000670.1_g000027 Rmu_sc0007873.1_g000022 Rmu_sc0008809.1_g000001 Rmu_sc0009745.1_g000013

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 342, 540
AasI GACNNNNNNGTC 1 cut(s) 611
AccB1I GGYRCC 1 cut(s) 442
AccI GTMKAC 1 cut(s) 615
AciI CCGC 5 cut(s) 446, 449, 500, 582, 629
AclWI GGATC 1 cut(s) 408
AcsI RAATTY 1 cut(s) 200
AcvI CACGTG 1 cut(s) 406
AcyI GRCGYC 1 cut(s) 443
AfaI GTAC 1 cut(s) 38
AfeI AGCGCT 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 425, 499
AgsI TTSAA 4 cut(s) 124, 160, 348, 637
AjiI CACGTC 2 cut(s) 274, 439
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 3 cut(s) 244, 308, 530
AluI AGCT 3 cut(s) 244, 308, 530
Alw21I GWGCWC 1 cut(s) 657
Alw26I GTCTC 1 cut(s) 172
Alw44I GTGCAC 1 cut(s) 653
AlwI GGATC 1 cut(s) 408
Aor51HI AGCGCT 1 cut(s) 86
AoxI GGCC 2 cut(s) 350, 471
ApaLI GTGCAC 1 cut(s) 653
ApeKI GCWGC 1 cut(s) 530
ApoI RAATTY 1 cut(s) 200
AspLEI GCGC 2 cut(s) 87, 445
AspS9I GGNCC 3 cut(s) 351, 471, 502
AsuHPI GGTGA 2 cut(s) 611, 613
AvaII GGWCC 1 cut(s) 502
BaeGI GKGCMC 1 cut(s) 657
BanI GGYRCC 1 cut(s) 442
BauI CACGAG 2 cut(s) 329, 374
BbrPI CACGTG 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 657
BbvI GCAGC 1 cut(s) 517
BccI CCATC 1 cut(s) 590
BceAI ACGGC 1 cut(s) 458
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 3 cut(s) 77, 287, 642
BfoI RGCGCY 2 cut(s) 88, 446
BisI GCNGC 4 cut(s) 446, 449, 531, 582
BlsI GCNGC 4 cut(s) 447, 450, 532, 583
Bme18I GGWCC 1 cut(s) 502
BmgBI CACGTC 2 cut(s) 274, 439
BmgT120I GGNCC 3 cut(s) 351, 471, 502
BmiI GGNNCC 1 cut(s) 444
BmsI GCATC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 413
BsaAI YACGTR 1 cut(s) 406
BsaHI GRCGYC 1 cut(s) 443
BsaJI CCNNGG 3 cut(s) 453, 467, 474
Bsc4I CCNNNNNNNGG 2 cut(s) 425, 499
Bse1I ACTGG 1 cut(s) 396
BseDI CCNNGG 3 cut(s) 453, 467, 474
BseGI GGATG 3 cut(s) 58, 96, 324
BseLI CCNNNNNNNGG 2 cut(s) 425, 499
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 396
BseRI GAGGAG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 657
BseXI GCAGC 1 cut(s) 517
BsgI GTGCAG 1 cut(s) 516
BshFI GGCC 2 cut(s) 352, 473
BshNI GGYRCC 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 657
BslI CCNNNNNNNGG 2 cut(s) 425, 499
BsmAI GTCTC 1 cut(s) 172
BsmI GAATGC 1 cut(s) 667
BsnI GGCC 2 cut(s) 352, 473
Bsp1286I GDGCHC 1 cut(s) 657
Bsp143I GATC 2 cut(s) 45, 400
Bsp19I CCATGG 2 cut(s) 453, 467
BspACI CCGC 5 cut(s) 446, 449, 500, 582, 629
BspANI GGCC 2 cut(s) 352, 473
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 444
BspPI GGATC 1 cut(s) 408
BspQI GCTCTTC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 442
BsrI ACTGG 1 cut(s) 396
BssECI CCNNGG 3 cut(s) 453, 467, 474
BssMI GATC 2 cut(s) 45, 400
BssNI GRCGYC 1 cut(s) 443
BssSI CACGAG 2 cut(s) 329, 374
BssT1I CCWWGG 2 cut(s) 453, 467
Bst2BI CACGAG 2 cut(s) 329, 374
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 2 cut(s) 75, 248
BstACI GRCGYC 1 cut(s) 443
BstAPI GCANNNNNTGC 1 cut(s) 578
BstBAI YACGTR 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 517
BstDEI CTNAG 3 cut(s) 277, 309, 363
BstDSI CCRYGG 3 cut(s) 453, 467, 474
BstF5I GGATG 3 cut(s) 58, 96, 324
BstH2I RGCGCY 2 cut(s) 88, 446
BstHHI GCGC 2 cut(s) 87, 445
BstKTI GATC 2 cut(s) 48, 403
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 2 cut(s) 45, 400
BstMWI GCNNNNNNNGC 2 cut(s) 82, 578
BstSLI GKGCMC 1 cut(s) 657
BstV1I GCAGC 1 cut(s) 517
BsuRI GGCC 2 cut(s) 352, 473
BtgI CCRYGG 3 cut(s) 453, 467, 474
BtgZI GCGATG 1 cut(s) 19
BtrI CACGTC 2 cut(s) 274, 439
BtsCI GGATG 3 cut(s) 58, 96, 324
BtsIMutI CAGTG 1 cut(s) 606
Cac8I GCNNGC 1 cut(s) 517
CfoI GCGC 2 cut(s) 87, 445
Cfr13I GGNCC 3 cut(s) 351, 471, 502
CseI GACGC 1 cut(s) 521
Csp6I GTAC 1 cut(s) 37
CspCI CAANNNNNGTGG 1 cut(s) 655
CviAII CATG 4 cut(s) 13, 40, 454, 468
CviJI RGCY 6 cut(s) 244, 308, 352, 463, 473, 530
CviKI_1 RGCY 6 cut(s) 244, 308, 352, 463, 473, 530
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 3 cut(s) 277, 309, 363
DinI GGCGCC 1 cut(s) 444
DpnI GATC 2 cut(s) 47, 402
DpnII GATC 2 cut(s) 45, 400
DrdI GACNNNNNNGTC 1 cut(s) 611
DseDI GACNNNNNNGTC 1 cut(s) 611
Eam1104I CTCTTC 2 cut(s) 75, 248
EarI CTCTTC 2 cut(s) 75, 248
Eco130I CCWWGG 2 cut(s) 453, 467
Eco47I GGWCC 1 cut(s) 502
Eco47III AGCGCT 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 406
EcoT14I CCWWGG 2 cut(s) 453, 467
EgeI GGCGCC 1 cut(s) 444
EheI GGCGCC 1 cut(s) 444
ErhI CCWWGG 2 cut(s) 453, 467
FaeI CATG 4 cut(s) 16, 43, 457, 471
FatI CATG 4 cut(s) 12, 39, 453, 467
FblI GTMKAC 1 cut(s) 615
Fnu4HI GCNGC 4 cut(s) 446, 449, 531, 582
FokI GGATG 3 cut(s) 65, 83, 311
Fsp4HI GCNGC 4 cut(s) 446, 449, 531, 582
FspBI CTAG 3 cut(s) 77, 287, 642
GlaI GCGC 2 cut(s) 86, 444
GluI GCNGC 4 cut(s) 446, 449, 531, 582
GsuI CTGGAG 1 cut(s) 413
HaeII RGCGCY 2 cut(s) 88, 446
HaeIII GGCC 2 cut(s) 352, 473
HgaI GACGC 1 cut(s) 521
HhaI GCGC 2 cut(s) 87, 445
Hin1I GRCGYC 1 cut(s) 443
Hin1II CATG 4 cut(s) 16, 43, 457, 471
Hin6I GCGC 2 cut(s) 85, 443
HinP1I GCGC 2 cut(s) 85, 443
HincII GTYRAC 2 cut(s) 489, 616
HindII GTYRAC 2 cut(s) 489, 616
HinfI GANTC 2 cut(s) 104, 185
HphI GGTGA 2 cut(s) 611, 613
Hpy166II GTNNAC 5 cut(s) 221, 373, 489, 616, 655
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 4 cut(s) 160, 331, 374, 642
Hpy8I GTNNAC 5 cut(s) 221, 373, 489, 616, 655
HpyAV CCTTC 2 cut(s) 118, 277
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 4 cut(s) 273, 316, 405, 438
HpyCH4V TGCA 3 cut(s) 56, 533, 655
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 578
HpyF3I CTNAG 3 cut(s) 277, 309, 363
HpySE526I ACGT 4 cut(s) 273, 316, 405, 438
Hsp92I GRCGYC 1 cut(s) 443
Hsp92II CATG 4 cut(s) 16, 43, 457, 471
HspAI GCGC 2 cut(s) 85, 443
KasI GGCGCC 1 cut(s) 442
Kzo9I GATC 2 cut(s) 45, 400
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 562
LpnPI CCDG 3 cut(s) 129, 377, 419
Lsp1109I GCAGC 1 cut(s) 517
LweI GCATC 1 cut(s) 43
MaeI CTAG 3 cut(s) 77, 287, 642
MaeII ACGT 4 cut(s) 273, 316, 405, 438
MaeIII GTNAC 3 cut(s) 92, 379, 509
MalI GATC 2 cut(s) 47, 402
MboI GATC 2 cut(s) 45, 400
MboII GAAGA 7 cut(s) 92, 265, 346, 599, 602, 605, 659
MhlI GDGCHC 1 cut(s) 657
MluCI AATT 5 cut(s) 178, 200, 246, 337, 343
Mly113I GGCGCC 1 cut(s) 443
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 8 cut(s) 119, 122, 204, 206, 338, 370, 562, 629
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 2 cut(s) 329, 660
Mva1269I GAATGC 1 cut(s) 667
MwoI GCNNNNNNNGC 2 cut(s) 82, 578
NarI GGCGCC 1 cut(s) 443
NcoI CCATGG 2 cut(s) 453, 467
NdeII GATC 2 cut(s) 45, 400
NlaIII CATG 4 cut(s) 16, 43, 457, 471
NlaIV GGNNCC 1 cut(s) 444
NmuCI GTSAC 1 cut(s) 509
PciSI GCTCTTC 1 cut(s) 75
PctI GAATGC 1 cut(s) 667
PfeI GAWTC 2 cut(s) 104, 185
PkrI GCNGC 4 cut(s) 447, 450, 532, 583
PluTI GGCGCC 1 cut(s) 446
PmaCI CACGTG 1 cut(s) 406
PmlI CACGTG 1 cut(s) 406
Ppu21I YACGTR 1 cut(s) 406
PsiI TTATAA 2 cut(s) 342, 540
PspCI CACGTG 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 444
PspPI GGNCC 3 cut(s) 351, 471, 502
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 2 cut(s) 329, 660
SalI GTCGAC 1 cut(s) 614
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 4 cut(s) 446, 449, 531, 582
Sau3AI GATC 2 cut(s) 45, 400
Sau96I GGNCC 3 cut(s) 351, 471, 502
SduI GDGCHC 1 cut(s) 657
SfaNI GCATC 1 cut(s) 43
SfoI GGCGCC 1 cut(s) 444
SinI GGWCC 1 cut(s) 502
SmiMI CAYNNNNRTG 2 cut(s) 329, 660
Sse9I AATT 5 cut(s) 178, 200, 246, 337, 343
SsiI CCGC 5 cut(s) 446, 449, 500, 582, 629
SspDI GGCGCC 1 cut(s) 442
SspMI CTAG 3 cut(s) 77, 287, 642
StyI CCWWGG 2 cut(s) 453, 467
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 4 cut(s) 276, 319, 408, 441
TaqI TCGA 1 cut(s) 615
TasI AATT 5 cut(s) 178, 200, 246, 337, 343
TatI WGTACW 1 cut(s) 36
TauI GCSGC 3 cut(s) 448, 451, 584
TfiI GAWTC 2 cut(s) 104, 185
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 1 cut(s) 530
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 1 cut(s) 139
TspRI CASTG 1 cut(s) 613
VneI GTGCAC 1 cut(s) 653
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 1 cut(s) 200
XbaI TCTAGA 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 615
XspI CTAG 3 cut(s) 77, 287, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.