Rmu_sc0009745.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009745.1
OG0023052
Physical Location & Seq
Reverse (-)
36399 .. 37280
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009745.1_g000013.1.cds

Sequence Viewer

Length: 798 bp
atggcaatcaaggatgctagagaattatgggttgcgctagaagagcgttttggcaatgtcaaggactccctcctccccgacttgaaagttcaatggagcaatctacgattcgccgacttcaagtctgtagctgaatttaattcagaagctctacgcctcaaaaccatgttggggttctatggacaacctgtcacggagcaagagttaattgagaaaactctctccacctttcccgtcaaagcaatatcggtatcaaagcaatatcgaactgaatacaatactagactgatcacgaggtttcataagctaattaatgttatgtctgtagctgaaaaacatgataatatccttgtgaataattataattcaaggccaacggaactaagagcgttcaagaagcgaattataataatgcacccaaaggagggcgcagggaatggaaccctaaaaataagggatacaacggacgttttggtccatataaccgccctacaaagggaggaaaccgtcagaatgaaggacggacacatggcaatacatggcaatgtgggagaggtggccatggggctccaggacgtggaggcaatcacattgacgtatgttattgatgtggatcaagtgagcattggttcaagcaatcaattagctgcgcattataaggcatttagagactttagagagcatgaagcctatattgccaaagaagaagaagatggtgatgatgccgacgtcaatctcaccatagcggacttcaaatctgacaaggaattgcacaaggatgctgcatattttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

265

Amino Acids

30.23

Weight (kDa)

5.76

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023052)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000670.1_g000027 Rmu_sc0007873.1_g000022 Rmu_sc0008809.1_g000001 Rmu_sc0009745.1_g000013

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 363, 407, 657
AasI GACNNNNNNGTC 1 cut(s) 473
AatII GACGTC 1 cut(s) 732
Acc16I TGCGCA 1 cut(s) 651
AccB7I CCANNNNNTGG 1 cut(s) 577
AciI CCGC 2 cut(s) 486, 746
AclWI GGATC 1 cut(s) 621
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 729
AfiI CCNNNNNNNGG 6 cut(s) 171, 424, 425, 495, 496, 577
AgsI TTSAA 7 cut(s) 85, 92, 121, 369, 394, 633, 754
AhdI GACNNNNNGTC 2 cut(s) 121, 188
AjiI CACGTC 1 cut(s) 577
AjnI CCWGG 1 cut(s) 570
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AluBI AGCT 5 cut(s) 131, 149, 307, 329, 647
AluI AGCT 5 cut(s) 131, 149, 307, 329, 647
Alw26I GTCTC 1 cut(s) 663
AlwI GGATC 1 cut(s) 621
AoxI GGCC 2 cut(s) 371, 558
ApeKI GCWGC 2 cut(s) 647, 782
ApoI RAATTY 1 cut(s) 134
AseI ATTAAT 1 cut(s) 312
AspLEI GCGC 3 cut(s) 37, 431, 652
AspS9I GGNCC 1 cut(s) 475
AsuHPI GGTGA 2 cut(s) 728, 730
AvaII GGWCC 1 cut(s) 475
BalI TGGCCA 1 cut(s) 560
BanII GRGCYC 1 cut(s) 570
BauI CACGAG 1 cut(s) 292
BbvI GCAGC 2 cut(s) 634, 769
BccI CCATC 1 cut(s) 707
BciT130I CCWGG 1 cut(s) 572
BciVI GTATCC 1 cut(s) 451
BclI TGATCA 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 663
BfaI CTAG 3 cut(s) 18, 38, 282
BfmI CTRYAG 2 cut(s) 126, 324
BfuI GTATCC 1 cut(s) 451
BisI GCNGC 2 cut(s) 648, 783
BlsI GCNGC 2 cut(s) 649, 784
Bme1390I CCNGG 1 cut(s) 572
Bme18I GGWCC 1 cut(s) 475
BmeRI GACNNNNNGTC 2 cut(s) 121, 188
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 1 cut(s) 475
BmiI GGNNCC 2 cut(s) 442, 569
BmrFI CCNGG 1 cut(s) 572
BmsI GCATC 3 cut(s) 4, 712, 769
BpmI CTGGAG 1 cut(s) 554
BsaBI GATNNNNATC 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 729
BsaJI CCNNGG 1 cut(s) 561
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 6 cut(s) 171, 424, 425, 495, 496, 577
Bse3DI GCAATG 2 cut(s) 61, 550
Bse8I GATNNNNATC 1 cut(s) 612
BseBI CCWGG 1 cut(s) 572
BseDI CCNNGG 1 cut(s) 561
BseGI GGATG 2 cut(s) 19, 784
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 6 cut(s) 171, 424, 425, 495, 496, 577
BseMI GCAATG 2 cut(s) 61, 550
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 2 cut(s) 634, 769
BshFI GGCC 2 cut(s) 373, 560
BslI CCNNNNNNNGG 6 cut(s) 171, 424, 425, 495, 496, 577
BsmAI GTCTC 1 cut(s) 663
BsnI GGCC 2 cut(s) 373, 560
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 2 cut(s) 288, 613
Bsp19I CCATGG 1 cut(s) 561
BspACI CCGC 2 cut(s) 486, 746
BspANI GGCC 2 cut(s) 373, 560
BspLI GGNNCC 2 cut(s) 442, 569
BspPI GGATC 1 cut(s) 621
BspQI GCTCTTC 1 cut(s) 36
BsrDI GCAATG 2 cut(s) 61, 550
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 2 cut(s) 288, 613
BssNI GRCGYC 1 cut(s) 729
BssSI CACGAG 1 cut(s) 292
BssT1I CCWWGG 1 cut(s) 561
Bst2BI CACGAG 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 572
Bst4CI ACNGT 1 cut(s) 508
Bst6I CTCTTC 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 729
BstDEI CTNAG 1 cut(s) 383
BstDSI CCRYGG 1 cut(s) 561
BstF5I GGATG 2 cut(s) 19, 784
BstHHI GCGC 3 cut(s) 37, 431, 652
BstKTI GATC 2 cut(s) 291, 616
BstMAI GTCTC 1 cut(s) 663
BstMBI GATC 2 cut(s) 288, 613
BstMWI GCNNNNNNNGC 2 cut(s) 43, 695
BstNI CCWGG 1 cut(s) 572
BstSCI CCNGG 1 cut(s) 570
BstSFI CTRYAG 2 cut(s) 126, 324
BstV1I GCAGC 2 cut(s) 634, 769
BsuI GTATCC 1 cut(s) 451
BsuRI GGCC 2 cut(s) 373, 560
BtgI CCRYGG 1 cut(s) 561
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 2 cut(s) 19, 784
CfoI GCGC 3 cut(s) 37, 431, 652
Cfr13I GGNCC 1 cut(s) 475
CviAII CATG 6 cut(s) 166, 338, 529, 539, 562, 683
CviJI RGCY 9 cut(s) 131, 149, 307, 329, 373, 560, 568, 647, 689
CviKI_1 RGCY 9 cut(s) 131, 149, 307, 329, 373, 560, 568, 647, 689
DdeI CTNAG 1 cut(s) 383
DpnI GATC 2 cut(s) 290, 615
DpnII GATC 2 cut(s) 288, 613
DrdI GACNNNNNNGTC 1 cut(s) 473
DriI GACNNNNNGTC 2 cut(s) 121, 188
DseDI GACNNNNNNGTC 1 cut(s) 473
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 36
Eam1105I GACNNNNNGTC 2 cut(s) 121, 188
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 561
Eco24I GRGCYC 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 570
EcoT14I CCWWGG 1 cut(s) 561
EcoT38I GRGCYC 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 561
FaeI CATG 6 cut(s) 169, 341, 532, 542, 565, 686
FatI CATG 6 cut(s) 165, 337, 528, 538, 561, 682
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 648, 783
FokI GGATG 2 cut(s) 26, 791
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 2 cut(s) 648, 783
FspBI CTAG 3 cut(s) 18, 38, 282
FspI TGCGCA 1 cut(s) 651
GlaI GCGC 3 cut(s) 36, 430, 651
GluI GCNGC 2 cut(s) 648, 783
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 2 cut(s) 373, 560
HhaI GCGC 3 cut(s) 37, 431, 652
Hin1I GRCGYC 1 cut(s) 729
Hin1II CATG 6 cut(s) 169, 341, 532, 542, 565, 686
Hin6I GCGC 3 cut(s) 35, 429, 650
HinP1I GCGC 3 cut(s) 35, 429, 650
HinfI GANTC 2 cut(s) 65, 108
HphI GGTGA 2 cut(s) 728, 730
Hpy188I TCNGA 3 cut(s) 145, 512, 760
Hpy188III TCNNGA 2 cut(s) 292, 394
Hpy99I CGWCG 1 cut(s) 731
HpyAV CCTTC 1 cut(s) 511
HpyCH4III ACNGT 1 cut(s) 508
HpyCH4IV ACGT 4 cut(s) 468, 576, 596, 729
HpyCH4V TGCA 3 cut(s) 415, 772, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 695
HpyF3I CTNAG 1 cut(s) 383
HpySE526I ACGT 4 cut(s) 468, 576, 596, 729
Hsp92I GRCGYC 1 cut(s) 729
Hsp92II CATG 6 cut(s) 169, 341, 532, 542, 565, 686
HspAI GCGC 3 cut(s) 35, 429, 650
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 2 cut(s) 288, 613
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 3 cut(s) 96, 196, 573
LpnPI CCDG 4 cut(s) 201, 417, 557, 584
Lsp1109I GCAGC 2 cut(s) 634, 769
LweI GCATC 3 cut(s) 4, 712, 769
MaeI CTAG 3 cut(s) 18, 38, 282
MaeII ACGT 4 cut(s) 468, 576, 596, 729
MaeIII GTNAC 1 cut(s) 190
MalI GATC 2 cut(s) 290, 615
MboI GATC 2 cut(s) 288, 613
MboII GAAGA 4 cut(s) 53, 716, 719, 722
MhlI GDGCHC 1 cut(s) 570
MlsI TGGCCA 1 cut(s) 560
MluNI TGGCCA 1 cut(s) 560
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 8 cut(s) 80, 83, 167, 288, 418, 493, 547, 574
Mox20I TGGCCA 1 cut(s) 560
MscI TGGCCA 1 cut(s) 560
MseI TTAA 3 cut(s) 138, 206, 312
MslI CAYNNNNRTG 2 cut(s) 543, 777
Msp20I TGGCCA 1 cut(s) 560
MspR9I CCNGG 1 cut(s) 572
MvaI CCWGG 1 cut(s) 572
MwoI GCNNNNNNNGC 2 cut(s) 43, 695
NcoI CCATGG 1 cut(s) 561
NdeII GATC 2 cut(s) 288, 613
NlaIII CATG 6 cut(s) 169, 341, 532, 542, 565, 686
NlaIV GGNNCC 2 cut(s) 442, 569
NmuCI GTSAC 1 cut(s) 190
NsbI TGCGCA 1 cut(s) 651
PciSI GCTCTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 108
PflMI CCANNNNNTGG 1 cut(s) 577
PfoI TCCNGGA 1 cut(s) 570
PkrI GCNGC 2 cut(s) 649, 784
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PshBI ATTAAT 1 cut(s) 312
PsiI TTATAA 3 cut(s) 363, 407, 657
Psp6I CCWGG 1 cut(s) 570
PspGI CCWGG 1 cut(s) 570
PspN4I GGNNCC 2 cut(s) 442, 569
PspPI GGNCC 1 cut(s) 475
RseI CAYNNNNRTG 2 cut(s) 543, 777
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 3 cut(s) 138, 206, 312
SatI GCNGC 2 cut(s) 648, 783
Sau3AI GATC 2 cut(s) 288, 613
Sau96I GGNCC 1 cut(s) 475
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 572
SduI GDGCHC 1 cut(s) 570
SfaNI GCATC 3 cut(s) 4, 712, 769
SfcI CTRYAG 2 cut(s) 126, 324
SinI GGWCC 1 cut(s) 475
SmiMI CAYNNNNRTG 2 cut(s) 543, 777
SsiI CCGC 2 cut(s) 486, 746
SspMI CTAG 3 cut(s) 18, 38, 282
StyD4I CCNGG 1 cut(s) 570
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 1 cut(s) 508
TaiI ACGT 4 cut(s) 471, 579, 599, 732
TaqI TCGA 1 cut(s) 265
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 3 cut(s) 138, 206, 312
Tru9I TTAA 3 cut(s) 138, 206, 312
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 2 cut(s) 647, 782
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 3 cut(s) 290, 530, 699
TspGWI ACGGA 4 cut(s) 209, 392, 479, 537
Van91I CCANNNNNTGG 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 475
VspI ATTAAT 1 cut(s) 312
XapI RAATTY 1 cut(s) 134
XspI CTAG 3 cut(s) 18, 38, 282
ZraI GACGTC 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.