Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000711.1

Orthogroup ID

OG0022728

Physical Location & Seq

Genomic Coordinates Forward (+)

155763 .. 156428

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000711.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgtccagacattgctctgaatccagtgttattcatgaaattgttgaagagatttcagagcaagtgataagcagtacatatttggatgtggctaagtacccagtaggaataaaacctcgggtgcaacagatccgtaaccttttaggtgtcaggggaagaggtgttcgtatggtagggatatgggggcccggaggaataggcaagacaacaattgccaaagctgtctataactcaattgctcataaatttgatgggagttgttttttggaaaatgttagagaaaattcaatgggtgccaaaggctttgtcaaactacaaaagaaacttctttttgagattctaaagggaacaaaattgaaggtgaccaatgtagcaagaggaatcactatgattaaggaaaggttgcaatacaaaagtgttctcttagttcttgatgatgtgaatagcatggatcagatagataacttagctggtcaatgtagttggtttggaatgggtagtagaatcatcataacaacaagggataagcaattgctgaggcatcataatgttaataacttaatatacgaggtccagaaattggatcatcatgaagctctcgagctattaagtatgaatgcctttaaaagaagtcgaactttggatgcttatgcagaactcacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

221

Amino Acids

24.9

Weight (kDa)

9.51

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022728)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0411741
rosa_multiflora	Rmu_co8266463.1_g000001 Rmu_sc0000711.1_g000029
rosa_roxburghii	Rroxscaffold_5G00358000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	293
AccB7I	CCANNNNNTGG	1 cut(s)	580
AclWI	GGATC	3 cut(s)	124, 459, 591
AcsI	RAATTY	2 cut(s)	245, 283
AfaI	GTAC	2 cut(s)	76, 98
AfiI	CCNNNNNNNGG	1 cut(s)	580
AgsI	TTSAA	3 cut(s)	47, 288, 358
AloI	GAACNNNNNNTCC	2 cut(s)	147, 179
AluBI	AGCT	4 cut(s)	221, 470, 596, 604
AluI	AGCT	4 cut(s)	221, 470, 596, 604
AlwI	GGATC	3 cut(s)	124, 459, 591
Ama87I	CYCGRG	2 cut(s)	117, 599
AoxI	GGCC	1 cut(s)	185
ApaI	GGGCCC	1 cut(s)	189
ApoI	RAATTY	2 cut(s)	245, 283
ArsI	GACNNNNNNTTYG	2 cut(s)	291, 323
AspS9I	GGNCC	3 cut(s)	185, 186, 571
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	373
AvaI	CYCGRG	2 cut(s)	117, 599
AvaII	GGWCC	1 cut(s)	571
BaeGI	GKGCMC	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	189
BbvCI	CCTCAGC	1 cut(s)	536
BccI	CCATC	1 cut(s)	245
BcnI	CCSGG	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	571
BmeT110I	CYCGRG	2 cut(s)	117, 599
BmgT120I	GGNCC	3 cut(s)	185, 186, 571
BmiI	GGNNCC	3 cut(s)	186, 187, 295
BmrFI	CCNGG	1 cut(s)	189
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	2 cut(s)	550, 634
BmuI	ACTGGG	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	536
BpuMI	CCSGG	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse1I	ACTGG	2 cut(s)	24, 101
Bse3DI	GCAATG	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	2 cut(s)	91, 649
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMI	GCAATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	2 cut(s)	24, 101
BseSI	GKGCMC	1 cut(s)	189
BshFI	GGCC	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	293
BsiHKCI	CYCGRG	2 cut(s)	117, 599
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	1 cut(s)	187
BsoBI	CYCGRG	2 cut(s)	117, 599
Bsp120I	GGGCCC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	3 cut(s)	129, 451, 583
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	528
BspHI	TCATGA	2 cut(s)	34, 589
BspLI	GGNNCC	3 cut(s)	186, 187, 295
BspPI	GGATC	3 cut(s)	124, 459, 591
BspT107I	GGYRCC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	24, 101
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	3 cut(s)	129, 451, 583
Bst6I	CTCTTC	2 cut(s)	42, 151
BstDEI	CTNAG	4 cut(s)	93, 424, 466, 536
BstEII	GGTNACC	1 cut(s)	361
BstF5I	GGATG	2 cut(s)	91, 649
BstKTI	GATC	3 cut(s)	132, 454, 586
BstMBI	GATC	3 cut(s)	129, 451, 583
BstPI	GGTNACC	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	91, 649
BtsIMutI	CAGTG	1 cut(s)	31
CciI	TCATGA	2 cut(s)	34, 589
Cfr13I	GGNCC	3 cut(s)	185, 186, 571
Csp6I	GTAC	2 cut(s)	75, 97
CviAII	CATG	3 cut(s)	35, 448, 590
CviJI	RGCY	7 cut(s)	92, 187, 221, 303, 470, 596, 604
CviKI_1	RGCY	7 cut(s)	92, 187, 221, 303, 470, 596, 604
CviQI	GTAC	2 cut(s)	75, 97
DdeI	CTNAG	4 cut(s)	93, 424, 466, 536
DpnI	GATC	3 cut(s)	131, 453, 585
DpnII	GATC	3 cut(s)	129, 451, 583
DraI	TTTAAA	1 cut(s)	625
Eam1104I	CTCTTC	2 cut(s)	42, 151
EarI	CTCTTC	2 cut(s)	42, 151
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	571
Eco88I	CYCGRG	2 cut(s)	117, 599
Eco91I	GGTNACC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	185
EcoO65I	GGTNACC	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	3 cut(s)	38, 451, 593
FalI	AAGNNNNNCTT	2 cut(s)	622, 654
FatI	CATG	3 cut(s)	34, 447, 589
FokI	GGATG	2 cut(s)	98, 656
FriOI	GRGCYC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	3 cut(s)	38, 451, 593
HinfI	GANTC	4 cut(s)	20, 337, 381, 504
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	373
Hpy188I	TCNGA	3 cut(s)	19, 58, 456
Hpy188III	TCNNGA	6 cut(s)	6, 35, 431, 574, 590, 599
HpyAV	CCTTC	1 cut(s)	352
HpyCH4V	TGCA	3 cut(s)	124, 406, 653
HpyF3I	CTNAG	4 cut(s)	93, 424, 466, 536
Hsp92II	CATG	3 cut(s)	38, 451, 593
Kzo9I	GATC	3 cut(s)	129, 451, 583
LpnPI	CCDG	7 cut(s)	19, 37, 114, 136, 202, 456, 587
LweI	GCATC	2 cut(s)	550, 634
MaeIII	GTNAC	2 cut(s)	134, 361
MalI	GATC	3 cut(s)	131, 453, 585
MboI	GATC	3 cut(s)	129, 451, 583
MboII	GAAGA	2 cut(s)	59, 168
MfeI	CAATTG	3 cut(s)	210, 234, 530
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	8 cut(s)	39, 210, 234, 245, 283, 353, 530, 578
MnlI	CCTC	6 cut(s)	126, 152, 185, 371, 531, 562
MseI	TTAA	5 cut(s)	393, 552, 560, 608, 624
MslI	CAYNNNNRTG	1 cut(s)	546
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	3 cut(s)	210, 234, 530
Mva1269I	GAATGC	1 cut(s)	622
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	3 cut(s)	129, 451, 583
NlaIII	CATG	3 cut(s)	38, 451, 593
NlaIV	GGNNCC	3 cut(s)	186, 187, 295
NmuCI	GTSAC	1 cut(s)	361
PaeR7I	CTCGAG	1 cut(s)	599
PagI	TCATGA	2 cut(s)	34, 589
PctI	GAATGC	1 cut(s)	622
PfeI	GAWTC	4 cut(s)	20, 337, 381, 504
PflMI	CCANNNNNTGG	1 cut(s)	580
PspEI	GGTNACC	1 cut(s)	361
PspN4I	GGNNCC	3 cut(s)	186, 187, 295
PspOMI	GGGCCC	1 cut(s)	185
PspPI	GGNCC	3 cut(s)	185, 186, 571
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	2 cut(s)	76, 98
RsaNI	GTAC	2 cut(s)	75, 97
RseI	CAYNNNNRTG	1 cut(s)	546
SaqAI	TTAA	5 cut(s)	393, 552, 560, 608, 624
Sau3AI	GATC	3 cut(s)	129, 451, 583
Sau96I	GGNCC	3 cut(s)	185, 186, 571
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	189
SfaNI	GCATC	2 cut(s)	550, 634
Sfr274I	CTCGAG	1 cut(s)	599
SinI	GGWCC	1 cut(s)	571
SlaI	CTCGAG	1 cut(s)	599
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	8 cut(s)	39, 210, 234, 245, 283, 353, 530, 578
StyD4I	CCNGG	1 cut(s)	187
TaqI	TCGA	2 cut(s)	600, 634
TasI	AATT	8 cut(s)	39, 210, 234, 245, 283, 353, 530, 578
TatI	WGTACW	1 cut(s)	74
TfiI	GAWTC	4 cut(s)	20, 337, 381, 504
Tru1I	TTAA	5 cut(s)	393, 552, 560, 608, 624
Tru9I	TTAA	5 cut(s)	393, 552, 560, 608, 624
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	4 cut(s)	23, 51, 606, 629
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	31
Van91I	CCANNNNNTGG	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	571
XapI	RAATTY	2 cut(s)	245, 283
XhoI	CTCGAG	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.