Rmu_sc0000730.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000730.1
OG0020055
Physical Location & Seq
Forward (+)
90889 .. 91981
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000730.1_g000019.1.cds

Sequence Viewer

Length: 291 bp
atgattaggagaggtggtgatgctcgccgaaaactggagctgcgatcagggaggaggaaaagaaggccaaagagtagagaggaggaagaggaagaagagttgaagacacccaaagaactgtgggatgcccttaagggacgttttgggaacattcatgacaccttgctcccagaactgaccgttcagtggaatgaaatccgcttgcttgactacaaaaaggtcaatgacttcaacaagtacatattgcgcctaaaggcacgtctgaatttctatggaaaggaactcacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

96

Amino Acids

11.67

Weight (kDa)

9.98

Isoelectric Point (pI)

81.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 199
AcsI RAATTY 1 cut(s) 265
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 2 cut(s) 34, 186
AflII CTTAAG 1 cut(s) 131
AgsI TTSAA 2 cut(s) 103, 232
AjiI CACGTC 1 cut(s) 260
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 265
AspLEI GCGC 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 131
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmgBI CACGTC 1 cut(s) 260
BmsI GCATC 2 cut(s) 10, 115
BpiI GAAGAC 1 cut(s) 110
BpmI CTGGAG 1 cut(s) 56
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 186
Bse1I ACTGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 2 cut(s) 34, 186
BseNI ACTGG 1 cut(s) 39
BseRI GAGGAG 2 cut(s) 67, 95
BseXI GCAGC 1 cut(s) 27
BshFI GGCC 1 cut(s) 67
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 34, 186
BsmFI GGGAC 1 cut(s) 150
BsnI GGCC 1 cut(s) 67
Bsp143I GATC 1 cut(s) 44
BspACI CCGC 1 cut(s) 199
BspANI GGCC 1 cut(s) 67
BspHI TCATGA 1 cut(s) 154
BspTI CTTAAG 1 cut(s) 131
BsrI ACTGG 1 cut(s) 39
BssMI GATC 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 120, 181
Bst6I CTCTTC 2 cut(s) 81, 90
BstAFI CTTAAG 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 25, 203
BstF5I GGATG 1 cut(s) 130
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 1 cut(s) 47
BstMBI GATC 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 110
BsuRI GGCC 1 cut(s) 67
BtrI CACGTC 1 cut(s) 260
BtsCI GGATG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 191
Cac8I GCNNGC 2 cut(s) 25, 203
CciI TCATGA 1 cut(s) 154
CfoI GCGC 1 cut(s) 249
Csp6I GTAC 1 cut(s) 238
CviAII CATG 1 cut(s) 155
CviJI RGCY 2 cut(s) 40, 67
CviKI_1 RGCY 2 cut(s) 40, 67
CviQI GTAC 1 cut(s) 238
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
Eam1104I CTCTTC 2 cut(s) 81, 90
EarI CTCTTC 2 cut(s) 81, 90
FaeI CATG 1 cut(s) 158
FaiI YATR 4 cut(s) 156, 242, 273, 289
FaqI GGGAC 1 cut(s) 150
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 41
GlaI GCGC 1 cut(s) 248
GluI GCNGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 1 cut(s) 67
HhaI GCGC 1 cut(s) 249
Hin1II CATG 1 cut(s) 158
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HphI GGTGA 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 2 cut(s) 120, 181
HpyCH4IV ACGT 2 cut(s) 139, 259
HpySE526I ACGT 2 cut(s) 139, 259
Hsp92II CATG 1 cut(s) 158
HspAI GCGC 1 cut(s) 247
Kzo9I GATC 1 cut(s) 44
LmnI GCTCC 2 cut(s) 37, 171
LpnPI CCDG 3 cut(s) 20, 33, 183
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 2 cut(s) 10, 115
MaeII ACGT 2 cut(s) 139, 259
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 4 cut(s) 98, 104, 107, 115
MluCI AATT 1 cut(s) 265
MnlI CCTC 6 cut(s) 5, 45, 48, 73, 76, 82
MseI TTAA 1 cut(s) 132
MspCI CTTAAG 1 cut(s) 131
NdeII GATC 1 cut(s) 44
NlaIII CATG 1 cut(s) 158
PagI TCATGA 1 cut(s) 154
PkrI GCNGC 1 cut(s) 42
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 1 cut(s) 44
SetI ASST 6 cut(s) 16, 42, 142, 164, 222, 262
SfaNI GCATC 2 cut(s) 10, 115
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 1 cut(s) 265
SsiI CCGC 1 cut(s) 199
TaaI ACNGT 2 cut(s) 120, 181
TaiI ACGT 2 cut(s) 142, 262
TasI AATT 1 cut(s) 265
TatI WGTACW 1 cut(s) 237
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 191
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 143, 207
TspRI CASTG 1 cut(s) 191
Vha464I CTTAAG 1 cut(s) 131
XapI RAATTY 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.