Rmu_sc0002837.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002837.1
OG0020055
Physical Location & Seq
Reverse (-)
17193 .. 19944
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002837.1_g000006.1.cds

Sequence Viewer

Length: 858 bp
atgaagttgggtgatcgttttctcgaactaaagaggacggcttggaatggggtctttaggtcgaagactggaaatgaaattgggtttagccctaatcgagaaattcagctatcaaaccagacccgaatggtaggtttcggtccggatcaaaccggtttctcggtctatcggccccagcgacctgtgctactgcctgcgcatcatccagcagcagccccgacaccggcgcagtccttcaccagcacagaccttcaccgacgaagccctacccagcctccagcccacctgctgcgcagatccagcgcctacgctgcacctccaacgcccagctccgacacgcccaaccaatccaagtcgccggtgatccgcctccagcaccgacccgacctcggcgcagcccacagcaggctagcctcacccccgctcctgcaacaccggcagatccaccattccagcaggcctcatcccgccgaatccttcttcccttcaccgcccagagtccccgcgactgcgaagcgcagccccggcccaacctcgcagccatttgaatgccggcacttgcagcagccatctgaacgcctgcagcagactcctcgtaagagattgaagacacccaaagaactgtgggatgcccttaagggacattttgggaacattcatgacacattgctcccagaactgaccgttcagtggaatgaaatccgcttgcttgactacaaaagggtcaatgacttcaacaaggacatgttgcgcctaaaggcacgtctaaatttctgtggaagcgaaatcacagaagatgatatgatccagaagactctttccacttttcctacttcagcaatcatactagcgaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

285

Amino Acids

32.17

Weight (kDa)

10.51

Isoelectric Point (pI)

75.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 294
Acc16I TGCGCA 2 cut(s) 198, 293
Acc36I ACCTGC 1 cut(s) 294
AccBSI CCGCTC 1 cut(s) 424
AccII CGCG 1 cut(s) 506
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 6 cut(s) 367, 422, 468, 491, 504, 703
AclWI GGATC 5 cut(s) 153, 291, 358, 436, 799
AcsI RAATTY 2 cut(s) 102, 769
AcuI CTGAAG 1 cut(s) 819
AfiI CCNNNNNNNGG 4 cut(s) 223, 389, 405, 690
AflII CTTAAG 1 cut(s) 635
AflIII ACRYGT 1 cut(s) 744
AgeI ACCGGT 1 cut(s) 152
AgsI TTSAA 3 cut(s) 548, 607, 736
AjiI CACGTC 1 cut(s) 764
AluBI AGCT 2 cut(s) 109, 330
AluI AGCT 2 cut(s) 109, 330
AlwI GGATC 5 cut(s) 153, 291, 358, 436, 799
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 3 cut(s) 170, 458, 526
ApoI RAATTY 2 cut(s) 102, 769
AsiGI ACCGGT 1 cut(s) 152
AspLEI GCGC 7 cut(s) 199, 229, 294, 305, 395, 519, 753
AspS9I GGNCC 3 cut(s) 140, 171, 527
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 6 cut(s) 23, 229, 245, 373, 408, 480
AsuNHI GCTAGC 1 cut(s) 409
AvaII GGWCC 1 cut(s) 140
BbsI GAAGAC 3 cut(s) 71, 614, 818
BccI CCATC 1 cut(s) 577
BceAI ACGGC 1 cut(s) 54
BcgI CGANNNNNNTGC 2 cut(s) 575, 609
BcnI CCSGG 1 cut(s) 525
BfaI CTAG 3 cut(s) 410, 848, 856
BfmI CTRYAG 1 cut(s) 581
BfoI RGCGCY 1 cut(s) 306
BfrI CTTAAG 1 cut(s) 635
BfuAI ACCTGC 1 cut(s) 294
Bme1390I CCNGG 1 cut(s) 525
Bme18I GGWCC 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 764
BmgT120I GGNCC 3 cut(s) 140, 171, 527
BmiI GGNNCC 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 525
BmsI GCATC 2 cut(s) 208, 619
BmtI GCTAGC 1 cut(s) 413
BpiI GAAGAC 3 cut(s) 71, 614, 818
BpmI CTGGAG 2 cut(s) 261, 356
BpuMI CCSGG 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 388, 523
BsaWI WCCGGW 2 cut(s) 142, 152
BsaXI ACNNNNNCTCC 4 cut(s) 259, 289, 408, 438
Bsc4I CCNNNNNNNGG 4 cut(s) 223, 389, 405, 690
Bse118I RCCGGY 5 cut(s) 152, 223, 358, 435, 552
Bse1I ACTGG 1 cut(s) 73
Bse3DI GCAATG 1 cut(s) 665
BseAI TCCGGA 1 cut(s) 142
BseDI CCNNGG 2 cut(s) 388, 523
BseGI GGATG 3 cut(s) 202, 463, 634
BseLI CCNNNNNNNGG 4 cut(s) 223, 389, 405, 690
BseMI GCAATG 1 cut(s) 665
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 582
BseYI CCCAGC 3 cut(s) 174, 270, 326
BsgI GTGCAG 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 506
BshFI GGCC 3 cut(s) 172, 460, 528
BshTI ACCGGT 1 cut(s) 152
BsiSI CCGG 7 cut(s) 143, 153, 224, 359, 436, 525, 553
BslFI GGGAC 2 cut(s) 485, 654
BslI CCNNNNNNNGG 4 cut(s) 223, 389, 405, 690
BsmFI GGGAC 2 cut(s) 485, 654
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 3 cut(s) 172, 460, 528
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 6 cut(s) 13, 145, 296, 363, 441, 804
BspACI CCGC 6 cut(s) 367, 422, 468, 491, 504, 703
BspANI GGCC 3 cut(s) 172, 460, 528
BspEI TCCGGA 1 cut(s) 142
BspFNI CGCG 1 cut(s) 506
BspHI TCATGA 1 cut(s) 658
BspLI GGNNCC 1 cut(s) 173
BspMAI CTGCAG 1 cut(s) 585
BspMI ACCTGC 1 cut(s) 294
BspOI GCTAGC 1 cut(s) 413
BspPI GGATC 5 cut(s) 153, 291, 358, 436, 799
BspTI CTTAAG 1 cut(s) 635
BsrBI CCGCTC 1 cut(s) 424
BsrDI GCAATG 1 cut(s) 665
BsrFI RCCGGY 5 cut(s) 152, 223, 358, 435, 552
BsrI ACTGG 1 cut(s) 73
BssAI RCCGGY 5 cut(s) 152, 223, 358, 435, 552
BssECI CCNNGG 2 cut(s) 388, 523
BssMI GATC 6 cut(s) 13, 145, 296, 363, 441, 804
Bst4CI ACNGT 2 cut(s) 624, 685
BstAFI CTTAAG 1 cut(s) 635
BstC8I GCNNGC 7 cut(s) 195, 407, 411, 458, 554, 581, 707
BstF5I GGATG 3 cut(s) 202, 463, 634
BstFNI CGCG 1 cut(s) 506
BstH2I RGCGCY 1 cut(s) 306
BstHHI GCGC 7 cut(s) 199, 229, 294, 305, 395, 519, 753
BstKTI GATC 6 cut(s) 16, 148, 299, 366, 444, 807
BstMBI GATC 6 cut(s) 13, 145, 296, 363, 441, 804
BstMWI GCNNNNNNNGC 6 cut(s) 184, 300, 311, 436, 525, 562
BstNSI RCATGY 1 cut(s) 748
BstSCI CCNGG 1 cut(s) 523
BstSFI CTRYAG 1 cut(s) 581
BstUI CGCG 1 cut(s) 506
BstV2I GAAGAC 3 cut(s) 71, 614, 818
BstX2I RGATCY 2 cut(s) 296, 441
BstYI RGATCY 2 cut(s) 296, 441
BsuRI GGCC 3 cut(s) 172, 460, 528
BtrI CACGTC 1 cut(s) 764
BtsCI GGATG 3 cut(s) 202, 463, 634
BtsIMutI CAGTG 1 cut(s) 695
BveI ACCTGC 1 cut(s) 294
Cac8I GCNNGC 7 cut(s) 195, 407, 411, 458, 554, 581, 707
CciI TCATGA 1 cut(s) 658
CfoI GCGC 7 cut(s) 199, 229, 294, 305, 395, 519, 753
Cfr10I RCCGGY 5 cut(s) 152, 223, 358, 435, 552
Cfr13I GGNCC 3 cut(s) 140, 171, 527
CpoI CGGWCCG 1 cut(s) 140
CspAI ACCGGT 1 cut(s) 152
CspI CGGWCCG 1 cut(s) 140
CviAII CATG 2 cut(s) 659, 745
DpnI GATC 6 cut(s) 15, 147, 298, 365, 443, 806
DpnII GATC 6 cut(s) 13, 145, 296, 363, 441, 804
EciI GGCGGA 1 cut(s) 356
Eco147I AGGCCT 1 cut(s) 460
Eco47I GGWCC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 819
FaeI CATG 2 cut(s) 662, 748
FaiI YATR 4 cut(s) 660, 746, 803, 845
FaqI GGGAC 2 cut(s) 485, 654
FatI CATG 2 cut(s) 658, 744
FauI CCCGC 3 cut(s) 429, 475, 511
FokI GGATG 3 cut(s) 189, 450, 641
FspBI CTAG 3 cut(s) 410, 848, 856
FspI TGCGCA 2 cut(s) 198, 293
GlaI GCGC 7 cut(s) 198, 228, 293, 304, 394, 518, 752
GsaI CCCAGC 3 cut(s) 178, 274, 330
GsuI CTGGAG 2 cut(s) 261, 356
HaeII RGCGCY 1 cut(s) 306
HaeIII GGCC 3 cut(s) 172, 460, 528
HapII CCGG 7 cut(s) 143, 153, 224, 359, 436, 525, 553
HhaI GCGC 7 cut(s) 199, 229, 294, 305, 395, 519, 753
Hin1II CATG 2 cut(s) 662, 748
Hin6I GCGC 7 cut(s) 197, 227, 292, 303, 393, 517, 751
HinP1I GCGC 7 cut(s) 197, 227, 292, 303, 393, 517, 751
HinfI GANTC 4 cut(s) 473, 498, 589, 814
HpaII CCGG 7 cut(s) 143, 153, 224, 359, 436, 525, 553
HphI GGTGA 6 cut(s) 23, 229, 245, 373, 408, 480
Hpy188I TCNGA 2 cut(s) 334, 574
Hpy188III TCNNGA 5 cut(s) 23, 98, 143, 659, 808
Hpy99I CGWCG 1 cut(s) 261
HpyAV CCTTC 4 cut(s) 244, 260, 487, 495
HpyCH4III ACNGT 2 cut(s) 624, 685
HpyCH4IV ACGT 1 cut(s) 763
HpyCH4V TGCA 4 cut(s) 314, 430, 562, 583
HpyF10VI GCNNNNNNNGC 6 cut(s) 184, 300, 311, 436, 525, 562
HpySE526I ACGT 1 cut(s) 763
Hsp92II CATG 2 cut(s) 662, 748
HspAI GCGC 7 cut(s) 197, 227, 292, 303, 393, 517, 751
Kpn2I TCCGGA 1 cut(s) 142
KroI GCCGGC 1 cut(s) 552
KroNI GCCGGC 1 cut(s) 554
Kzo9I GATC 6 cut(s) 13, 145, 296, 363, 441, 804
LmnI GCTCC 3 cut(s) 335, 429, 675
LweI GCATC 2 cut(s) 208, 619
MaeI CTAG 3 cut(s) 410, 848, 856
MaeII ACGT 1 cut(s) 763
MalI GATC 6 cut(s) 15, 147, 298, 365, 443, 806
MbiI CCGCTC 1 cut(s) 424
MboI GATC 6 cut(s) 13, 145, 296, 363, 441, 804
MboII GAAGA 5 cut(s) 76, 472, 619, 806, 823
MflI RGATCY 2 cut(s) 296, 441
MluCI AATT 3 cut(s) 78, 102, 769
MlyI GAGTC 3 cut(s) 507, 583, 808
MmeI TCCRAC 2 cut(s) 344, 357
MnlI CCTC 9 cut(s) 27, 285, 327, 380, 398, 424, 471, 544, 603
MroI TCCGGA 1 cut(s) 142
MroNI GCCGGC 1 cut(s) 552
MseI TTAA 1 cut(s) 636
MslI CAYNNNNRTG 1 cut(s) 547
MspCI CTTAAG 1 cut(s) 635
MspI CCGG 7 cut(s) 143, 153, 224, 359, 436, 525, 553
MspR9I CCNGG 1 cut(s) 525
Mva1269I GAATGC 1 cut(s) 554
MvnI CGCG 1 cut(s) 506
MwoI GCNNNNNNNGC 6 cut(s) 184, 300, 311, 436, 525, 562
NaeI GCCGGC 1 cut(s) 554
NciI CCSGG 1 cut(s) 525
NdeII GATC 6 cut(s) 13, 145, 296, 363, 441, 804
NgoMIV GCCGGC 1 cut(s) 552
NheI GCTAGC 1 cut(s) 409
NlaIII CATG 2 cut(s) 662, 748
NlaIV GGNNCC 1 cut(s) 173
NmeAIII GCCGAG 1 cut(s) 369
NsbI TGCGCA 2 cut(s) 198, 293
NspI RCATGY 1 cut(s) 748
PagI TCATGA 1 cut(s) 658
PaqCI CACCTGC 1 cut(s) 294
PceI AGGCCT 1 cut(s) 460
PciI ACATGT 1 cut(s) 744
PcsI WCGNNNNNNNCGW 1 cut(s) 175
PctI GAATGC 1 cut(s) 554
PdiI GCCGGC 1 cut(s) 554
PfeI GAWTC 1 cut(s) 473
PinAI ACCGGT 1 cut(s) 152
PleI GAGTC 3 cut(s) 506, 583, 808
PpsI GAGTC 3 cut(s) 506, 583, 808
PscI ACATGT 1 cut(s) 744
PspFI CCCAGC 3 cut(s) 174, 270, 326
PspN4I GGNNCC 1 cut(s) 173
PspPI GGNCC 3 cut(s) 140, 171, 527
PstI CTGCAG 1 cut(s) 585
PsuI RGATCY 2 cut(s) 296, 441
RseI CAYNNNNRTG 1 cut(s) 547
Rsr2I CGGWCCG 1 cut(s) 140
RsrII CGGWCCG 1 cut(s) 140
SaqAI TTAA 1 cut(s) 636
Sau3AI GATC 6 cut(s) 13, 145, 296, 363, 441, 804
Sau96I GGNCC 3 cut(s) 140, 171, 527
SchI GAGTC 3 cut(s) 507, 583, 808
ScrFI CCNGG 1 cut(s) 525
SfaNI GCATC 2 cut(s) 208, 619
SfcI CTRYAG 1 cut(s) 581
SgrAI CRCCGGYG 2 cut(s) 223, 358
SinI GGWCC 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 547
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 3 cut(s) 78, 102, 769
SseBI AGGCCT 1 cut(s) 460
SsiI CCGC 6 cut(s) 367, 422, 468, 491, 504, 703
SspMI CTAG 3 cut(s) 410, 848, 856
StuI AGGCCT 1 cut(s) 460
StyD4I CCNGG 1 cut(s) 523
TaaI ACNGT 2 cut(s) 624, 685
TaiI ACGT 1 cut(s) 766
TaqI TCGA 3 cut(s) 24, 62, 97
TaqII GACCGA 2 cut(s) 128, 151
TasI AATT 3 cut(s) 78, 102, 769
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 1 cut(s) 695
TspDTI ATGAA 4 cut(s) 17, 90, 647, 711
TspRI CASTG 1 cut(s) 695
Vha464I CTTAAG 1 cut(s) 635
VpaK11BI GGWCC 1 cut(s) 140
XapI RAATTY 2 cut(s) 102, 769
XceI RCATGY 1 cut(s) 748
XspI CTAG 3 cut(s) 410, 848, 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.