Rmu_sc0001329.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001329.1
OG0020055
Physical Location & Seq
Forward (+)
55212 .. 55520
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001329.1_g000017.1.cds

Sequence Viewer

Length: 309 bp
atgtttctaaggcgacatattgatcctagcctacgctgggagtaccttcagttgaagacacccaaagaactgtgggatggccttaagggacattttgggaacattcatgacactttgcttccagaactggccgtccagtggaatgaaatccgcttgcttgactacaaaaggttcaatgacttcaacaaagacatgttgcgcttaaaggcacgtctcaatttctgtggaaggaaaatcacaaaagatgatatgatcgaaaagactctttccacctttcctacttcagcgcttatgctagcgaaccagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

102

Amino Acids

12.22

Weight (kDa)

9.41

Isoelectric Point (pI)

55.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 151
AclWI GGATC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 129
AcuI CTGAAG 2 cut(s) 32, 267
AfaI GTAC 1 cut(s) 44
AfeI AGCGCT 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 37, 138
AflII CTTAAG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 3 cut(s) 55, 175, 184
AjiI CACGTC 1 cut(s) 212
AloI GAACNNNNNNTCC 2 cut(s) 117, 149
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 17
Aor51HI AGCGCT 1 cut(s) 288
AoxI GGCC 2 cut(s) 79, 129
AspLEI GCGC 2 cut(s) 201, 289
AsuNHI GCTAGC 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 62
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 2 cut(s) 27, 296
BfoI RGCGCY 1 cut(s) 290
BfrI CTTAAG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 212
BmtI GCTAGC 1 cut(s) 299
BpiI GAAGAC 1 cut(s) 62
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 138
Bse1I ACTGG 3 cut(s) 132, 136, 304
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 37, 138
BseNI ACTGG 3 cut(s) 132, 136, 304
BseYI CCCAGC 1 cut(s) 36
BshFI GGCC 2 cut(s) 81, 131
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 37, 138
BsmAI GTCTC 1 cut(s) 218
BsmBI CGTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 2 cut(s) 81, 131
Bsp143I GATC 2 cut(s) 22, 252
BspACI CCGC 1 cut(s) 151
BspANI GGCC 2 cut(s) 81, 131
BspHI TCATGA 1 cut(s) 106
BspOI GCTAGC 1 cut(s) 299
BspPI GGATC 1 cut(s) 17
BspTI CTTAAG 1 cut(s) 83
BsrI ACTGG 3 cut(s) 132, 136, 304
BssMI GATC 2 cut(s) 22, 252
Bst4CI ACNGT 1 cut(s) 72
BstAFI CTTAAG 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 155, 297
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 290
BstHHI GCGC 2 cut(s) 201, 289
BstKTI GATC 2 cut(s) 25, 255
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 2 cut(s) 22, 252
BstNSI RCATGY 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 2 cut(s) 81, 131
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 2 cut(s) 155, 297
CciI TCATGA 1 cut(s) 106
CfoI GCGC 2 cut(s) 201, 289
Csp6I GTAC 1 cut(s) 43
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 2 cut(s) 107, 193
CviJI RGCY 3 cut(s) 30, 81, 131
CviKI_1 RGCY 3 cut(s) 30, 81, 131
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 8
DpnI GATC 2 cut(s) 24, 254
DpnII GATC 2 cut(s) 22, 252
EaeI YGGCCR 1 cut(s) 129
Eco47III AGCGCT 1 cut(s) 288
Eco57I CTGAAG 2 cut(s) 32, 267
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 2 cut(s) 110, 196
FaiI YATR 5 cut(s) 18, 108, 194, 251, 293
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 106, 192
FokI GGATG 1 cut(s) 89
FspBI CTAG 2 cut(s) 27, 296
GlaI GCGC 2 cut(s) 200, 288
GsaI CCCAGC 1 cut(s) 40
HaeII RGCGCY 1 cut(s) 290
HaeIII GGCC 2 cut(s) 81, 131
HhaI GCGC 2 cut(s) 201, 289
Hin1II CATG 2 cut(s) 110, 196
Hin6I GCGC 2 cut(s) 199, 287
HinP1I GCGC 2 cut(s) 199, 287
HinfI GANTC 1 cut(s) 262
Hpy188III TCNNGA 2 cut(s) 107, 122
HpyAV CCTTC 2 cut(s) 56, 222
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 2 cut(s) 110, 196
HspAI GCGC 2 cut(s) 199, 287
Kzo9I GATC 2 cut(s) 22, 252
LpnPI CCDG 4 cut(s) 22, 113, 135, 149
MaeI CTAG 2 cut(s) 27, 296
MaeII ACGT 1 cut(s) 211
MalI GATC 2 cut(s) 24, 254
MboI GATC 2 cut(s) 22, 252
MboII GAAGA 1 cut(s) 67
MluCI AATT 1 cut(s) 217
MlyI GAGTC 1 cut(s) 256
MseI TTAA 2 cut(s) 84, 203
MspCI CTTAAG 1 cut(s) 83
NdeII GATC 2 cut(s) 22, 252
NheI GCTAGC 1 cut(s) 295
NlaIII CATG 2 cut(s) 110, 196
NspI RCATGY 1 cut(s) 196
PagI TCATGA 1 cut(s) 106
PciI ACATGT 1 cut(s) 192
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PscI ACATGT 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 36
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 84, 203
Sau3AI GATC 2 cut(s) 22, 252
SchI GAGTC 1 cut(s) 256
SetI ASST 4 cut(s) 48, 173, 214, 275
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 1 cut(s) 217
SsiI CCGC 1 cut(s) 151
SspMI CTAG 2 cut(s) 27, 296
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 255
TasI AATT 1 cut(s) 217
Tru1I TTAA 2 cut(s) 84, 203
Tru9I TTAA 2 cut(s) 84, 203
TscAI CASTG 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 95, 159
TspRI CASTG 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 83
XceI RCATGY 1 cut(s) 196
XspI CTAG 2 cut(s) 27, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.