Rmu_sc0005670.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005670.1
OG0020055
Physical Location & Seq
Forward (+)
34787 .. 37881
3095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005670.1_g000009.1.cds

Sequence Viewer

Length: 930 bp
atggagattgaaggatcatatccgaaagccaagaatcaaattcacttatctcatgataaaggtagtttgcatttggcaatgggtatttggacagggagaaggcagccctaccagcctaggaacattatgaaccacctgtggccagcaagaacccagctgacatctagttccagtgctaattaccacacccgtgccttactcgcccaacctgcagatcctagccagcacgggctcgcctcgtgtgcagatcctagcgcagcccagtctctagcgcaagccgatcccagcggcctcaactctgcctacactgcctcccaaagcactgcagcccagcccttgcccagtcgaacgccctcgttgctcagccgcatgacctgctgcacaccatcattgcagacacccatttgcaatccagaaggaaggagaagagagaaccagaaggaagaaagaagacgcgaagaagaaaagagaaaaaaattaaaaaaggccaaagaaaaggccctcggcccagagaaaaaaaaaagggaatcaggccctgtggccaagaaaaagaaaaaaacaaggcctggtggcccattactgaaaaaaaaaaacaacaaaaagaggaagcggcccagtttttctcaagtccaaaaacatcgctacgtacgcctcctacgctgggagtaccttcagttgaagacacccaaagaacagtgggacgcccttaagagacgttttgggaatattcatgacactttgttcctagatatggccgttcaatggaatggaatccgcttgcttgactacaaaagggtcaatgacttcaacaaggacatgttgcgcttaaaggcacgtctcaatttatgtggaaggaaaatcacagaagatgatatgatcgaaaagactctttccacatttcctacttcagcgcttatactagcgaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

309

Amino Acids

35.32

Weight (kDa)

10.32

Isoelectric Point (pI)

65.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 217, 383
AccII CGCG 1 cut(s) 456
AciI CCGC 4 cut(s) 288, 367, 610, 775
AclWI GGATC 4 cut(s) 22, 209, 242, 275
AcoI YGGCCR 3 cut(s) 140, 540, 753
AcsI RAATTY 1 cut(s) 39
AcuI CTGAAG 2 cut(s) 656, 891
AcyI GRCGYC 1 cut(s) 702
AfaI GTAC 2 cut(s) 648, 668
AfeI AGCGCT 1 cut(s) 912
AfiI CCNNNNNNNGG 3 cut(s) 661, 751, 762
AflII CTTAAG 1 cut(s) 707
AflIII ACRYGT 1 cut(s) 816
AgsI TTSAA 4 cut(s) 11, 679, 761, 808
AjiI CACGTC 1 cut(s) 836
AjnI CCWGG 1 cut(s) 565
AleI CACNNNNGTG 1 cut(s) 189
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw26I GTCTC 3 cut(s) 270, 706, 842
AlwI GGATC 4 cut(s) 22, 209, 242, 275
AlwNI CAGNNNCTG 1 cut(s) 536
Aor51HI AGCGCT 1 cut(s) 912
ApeKI GCWGC 4 cut(s) 103, 257, 326, 378
ApoI RAATTY 1 cut(s) 39
AspA2I CCTAGG 1 cut(s) 116
AspLEI GCGC 4 cut(s) 257, 274, 825, 913
AspS9I GGNCC 5 cut(s) 499, 506, 533, 572, 612
AvrII CCTAGG 1 cut(s) 116
BalI TGGCCA 2 cut(s) 142, 542
BanII GRGCYC 1 cut(s) 234
BauI CACGAG 1 cut(s) 238
BbsI GAAGAC 2 cut(s) 457, 686
BbvI GCAGC 4 cut(s) 115, 269, 338, 365
BccI CCATC 1 cut(s) 394
BceAI ACGGC 1 cut(s) 740
BciT130I CCWGG 1 cut(s) 567
BcoDI GTCTC 3 cut(s) 270, 706, 842
BfaI CTAG 8 cut(s) 117, 165, 219, 252, 269, 746, 920, 928
BfmI CTRYAG 2 cut(s) 210, 324
BfoI RGCGCY 1 cut(s) 914
BfrI CTTAAG 1 cut(s) 707
BfuAI ACCTGC 2 cut(s) 217, 383
BisI GCNGC 7 cut(s) 104, 258, 289, 327, 367, 379, 611
BlnI CCTAGG 1 cut(s) 116
BlpI GCTNAGC 1 cut(s) 362
BlsI GCNGC 7 cut(s) 105, 259, 290, 328, 368, 380, 612
Bme1390I CCNGG 1 cut(s) 567
BmgBI CACGTC 1 cut(s) 836
BmgT120I GGNCC 5 cut(s) 499, 506, 533, 572, 612
BmrFI CCNGG 1 cut(s) 567
BmrI ACTGGG 3 cut(s) 256, 336, 609
BmuI ACTGGG 3 cut(s) 256, 336, 609
BpiI GAAGAC 2 cut(s) 457, 686
Bpu1102I GCTNAGC 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 609
BsaAI YACGTR 1 cut(s) 646
BsaHI GRCGYC 1 cut(s) 702
BsaJI CCNNGG 2 cut(s) 116, 502
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 3 cut(s) 661, 751, 762
Bse1I ACTGG 4 cut(s) 171, 262, 342, 615
Bse3DI GCAATG 2 cut(s) 84, 389
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 2 cut(s) 116, 502
BseLI CCNNNNNNNGG 3 cut(s) 661, 751, 762
BseMI GCAATG 2 cut(s) 84, 389
BseMII CTCAG 1 cut(s) 376
BseNI ACTGG 4 cut(s) 171, 262, 342, 615
BseXI GCAGC 4 cut(s) 115, 269, 338, 365
BseYI CCCAGC 4 cut(s) 153, 284, 330, 660
BsgI GTGCAG 2 cut(s) 264, 364
Bsh1236I CGCG 1 cut(s) 456
BsiWI CGTACG 1 cut(s) 646
BslFI GGGAC 1 cut(s) 713
BslI CCNNNNNNNGG 3 cut(s) 661, 751, 762
BsmAI GTCTC 3 cut(s) 270, 706, 842
BsmBI CGTCTC 2 cut(s) 706, 842
BsmFI GGGAC 1 cut(s) 713
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 5 cut(s) 14, 214, 247, 280, 876
Bsp1720I GCTNAGC 1 cut(s) 362
BspACI CCGC 4 cut(s) 288, 367, 610, 775
BspCNI CTCAG 1 cut(s) 375
BspFNI CGCG 1 cut(s) 456
BspHI TCATGA 2 cut(s) 52, 730
BspMAI CTGCAG 2 cut(s) 214, 328
BspMI ACCTGC 2 cut(s) 217, 383
BspPI GGATC 4 cut(s) 22, 209, 242, 275
BspTI CTTAAG 1 cut(s) 707
BsrDI GCAATG 2 cut(s) 84, 389
BsrI ACTGG 4 cut(s) 171, 262, 342, 615
BssECI CCNNGG 2 cut(s) 116, 502
BssMI GATC 5 cut(s) 14, 214, 247, 280, 876
BssNI GRCGYC 1 cut(s) 702
BssSI CACGAG 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 116
Bst2BI CACGAG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 1 cut(s) 696
Bst6I CTCTTC 1 cut(s) 421
BstACI GRCGYC 1 cut(s) 702
BstAFI CTTAAG 1 cut(s) 707
BstAPI GCANNNNNTGC 1 cut(s) 375
BstBAI YACGTR 1 cut(s) 646
BstC8I GCNNGC 5 cut(s) 144, 224, 234, 276, 779
BstDEI CTNAG 1 cut(s) 362
BstFNI CGCG 1 cut(s) 456
BstH2I RGCGCY 1 cut(s) 914
BstHHI GCGC 4 cut(s) 257, 274, 825, 913
BstKTI GATC 5 cut(s) 17, 217, 250, 283, 879
BstMAI GTCTC 3 cut(s) 270, 706, 842
BstMBI GATC 5 cut(s) 14, 214, 247, 280, 876
BstMWI GCNNNNNNNGC 9 cut(s) 112, 200, 209, 242, 308, 358, 375, 648, 657
BstNI CCWGG 1 cut(s) 567
BstNSI RCATGY 1 cut(s) 820
BstSCI CCNGG 1 cut(s) 565
BstSFI CTRYAG 2 cut(s) 210, 324
BstSNI TACGTA 1 cut(s) 646
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 4 cut(s) 115, 269, 338, 365
BstV2I GAAGAC 2 cut(s) 457, 686
BstX2I RGATCY 2 cut(s) 214, 247
BstYI RGATCY 2 cut(s) 214, 247
BtgZI GCGATG 1 cut(s) 623
BtrI CACGTC 1 cut(s) 836
BtsI GCAGTG 2 cut(s) 306, 321
BtsIMutI CAGTG 4 cut(s) 178, 306, 321, 701
BveI ACCTGC 2 cut(s) 217, 383
Cac8I GCNNGC 5 cut(s) 144, 224, 234, 276, 779
CaiI CAGNNNCTG 1 cut(s) 536
CciI TCATGA 2 cut(s) 52, 730
CfoI GCGC 4 cut(s) 257, 274, 825, 913
Cfr13I GGNCC 5 cut(s) 499, 506, 533, 572, 612
CseI GACGC 2 cut(s) 462, 710
Csp6I GTAC 2 cut(s) 647, 667
CspCI CAANNNNNGTGG 2 cut(s) 829, 864
CviAII CATG 4 cut(s) 53, 370, 731, 817
CviQI GTAC 2 cut(s) 647, 667
DdeI CTNAG 1 cut(s) 362
DpnI GATC 5 cut(s) 16, 216, 249, 282, 878
DpnII GATC 5 cut(s) 14, 214, 247, 280, 876
EaeI YGGCCR 3 cut(s) 140, 540, 753
Eam1104I CTCTTC 1 cut(s) 421
EarI CTCTTC 1 cut(s) 421
Eco105I TACGTA 1 cut(s) 646
Eco130I CCWWGG 1 cut(s) 116
Eco147I AGGCCT 1 cut(s) 565
Eco24I GRGCYC 1 cut(s) 234
Eco47III AGCGCT 1 cut(s) 912
Eco57I CTGAAG 2 cut(s) 656, 891
EcoO109I RGGNCCY 2 cut(s) 499, 533
EcoRII CCWGG 1 cut(s) 565
EcoT14I CCWWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 116
Esp3I CGTCTC 2 cut(s) 706, 842
FaeI CATG 4 cut(s) 56, 373, 734, 820
FaqI GGGAC 1 cut(s) 713
FatI CATG 4 cut(s) 52, 369, 730, 816
Fnu4HI GCNGC 7 cut(s) 104, 258, 289, 327, 367, 379, 611
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 7 cut(s) 104, 258, 289, 327, 367, 379, 611
FspBI CTAG 8 cut(s) 117, 165, 219, 252, 269, 746, 920, 928
GlaI GCGC 4 cut(s) 256, 273, 824, 912
GluI GCNGC 7 cut(s) 104, 258, 289, 327, 367, 379, 611
GsaI CCCAGC 4 cut(s) 157, 288, 334, 664
HaeII RGCGCY 1 cut(s) 914
HgaI GACGC 2 cut(s) 462, 710
HhaI GCGC 4 cut(s) 257, 274, 825, 913
Hin1I GRCGYC 1 cut(s) 702
Hin1II CATG 4 cut(s) 56, 373, 734, 820
Hin6I GCGC 4 cut(s) 255, 272, 823, 911
HinP1I GCGC 4 cut(s) 255, 272, 823, 911
HinfI GANTC 4 cut(s) 34, 527, 771, 886
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 3 cut(s) 53, 413, 731
HpyAV CCTTC 7 cut(s) 5, 93, 410, 414, 433, 680, 846
HpyCH4III ACNGT 1 cut(s) 696
HpyCH4IV ACGT 3 cut(s) 645, 715, 835
HpyCH4V TGCA 7 cut(s) 70, 212, 245, 326, 381, 394, 408
HpyF10VI GCNNNNNNNGC 9 cut(s) 112, 200, 209, 242, 308, 358, 375, 648, 657
HpyF3I CTNAG 1 cut(s) 362
HpySE526I ACGT 3 cut(s) 645, 715, 835
Hsp92I GRCGYC 1 cut(s) 702
Hsp92II CATG 4 cut(s) 56, 373, 734, 820
HspAI GCGC 4 cut(s) 255, 272, 823, 911
Kzo9I GATC 5 cut(s) 14, 214, 247, 280, 876
Lsp1109I GCAGC 4 cut(s) 115, 269, 338, 365
MaeI CTAG 8 cut(s) 117, 165, 219, 252, 269, 746, 920, 928
MaeII ACGT 3 cut(s) 645, 715, 835
MalI GATC 5 cut(s) 16, 216, 249, 282, 878
MboI GATC 5 cut(s) 14, 214, 247, 280, 876
MboII GAAGA 7 cut(s) 438, 455, 462, 470, 473, 691, 878
MflI RGATCY 2 cut(s) 214, 247
MhlI GDGCHC 1 cut(s) 234
MlsI TGGCCA 2 cut(s) 142, 542
MluCI AATT 4 cut(s) 39, 178, 476, 841
MluNI TGGCCA 2 cut(s) 142, 542
MlyI GAGTC 1 cut(s) 880
MnlI CCTC 7 cut(s) 247, 302, 322, 364, 512, 597, 662
Mox20I TGGCCA 2 cut(s) 142, 542
MscI TGGCCA 2 cut(s) 142, 542
MseI TTAA 3 cut(s) 479, 708, 827
MslI CAYNNNNRTG 1 cut(s) 189
Msp20I TGGCCA 2 cut(s) 142, 542
MspA1I CMGCKG 2 cut(s) 157, 288
MspCI CTTAAG 1 cut(s) 707
MspR9I CCNGG 1 cut(s) 567
MvaI CCWGG 1 cut(s) 567
MvnI CGCG 1 cut(s) 456
MwoI GCNNNNNNNGC 9 cut(s) 112, 200, 209, 242, 308, 358, 375, 648, 657
NdeII GATC 5 cut(s) 14, 214, 247, 280, 876
NlaIII CATG 4 cut(s) 56, 373, 734, 820
NmeAIII GCCGAG 1 cut(s) 483
NspI RCATGY 1 cut(s) 820
OliI CACNNNNGTG 1 cut(s) 189
PagI TCATGA 2 cut(s) 52, 730
PceI AGGCCT 1 cut(s) 565
PciI ACATGT 1 cut(s) 816
PfeI GAWTC 3 cut(s) 34, 527, 771
Pfl23II CGTACG 1 cut(s) 646
PkrI GCNGC 7 cut(s) 105, 259, 290, 328, 368, 380, 612
PleI GAGTC 1 cut(s) 880
PpsI GAGTC 1 cut(s) 880
Ppu21I YACGTR 1 cut(s) 646
PscI ACATGT 1 cut(s) 816
Psp6I CCWGG 1 cut(s) 565
PspFI CCCAGC 4 cut(s) 153, 284, 330, 660
PspGI CCWGG 1 cut(s) 565
PspLI CGTACG 1 cut(s) 646
PspPI GGNCC 5 cut(s) 499, 506, 533, 572, 612
PstI CTGCAG 2 cut(s) 214, 328
PstNI CAGNNNCTG 1 cut(s) 536
PsuI RGATCY 2 cut(s) 214, 247
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 2 cut(s) 648, 668
RsaNI GTAC 2 cut(s) 647, 667
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 3 cut(s) 479, 708, 827
SatI GCNGC 7 cut(s) 104, 258, 289, 327, 367, 379, 611
Sau3AI GATC 5 cut(s) 14, 214, 247, 280, 876
Sau96I GGNCC 5 cut(s) 499, 506, 533, 572, 612
SchI GAGTC 1 cut(s) 880
ScrFI CCNGG 1 cut(s) 567
SduI GDGCHC 1 cut(s) 234
SetI ASST 9 cut(s) 64, 138, 159, 211, 377, 648, 672, 718, 838
SfcI CTRYAG 2 cut(s) 210, 324
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 624, 707
SmoI CTYRAG 2 cut(s) 624, 707
SnaBI TACGTA 1 cut(s) 646
Sse9I AATT 4 cut(s) 39, 178, 476, 841
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 4 cut(s) 288, 367, 610, 775
SspI AATATT 1 cut(s) 727
SspMI CTAG 8 cut(s) 117, 165, 219, 252, 269, 746, 920, 928
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 1 cut(s) 565
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 696
TaiI ACGT 3 cut(s) 648, 718, 838
TaqI TCGA 2 cut(s) 346, 879
TasI AATT 4 cut(s) 39, 178, 476, 841
TauI GCSGC 3 cut(s) 291, 369, 613
TfiI GAWTC 3 cut(s) 34, 527, 771
Tru1I TTAA 3 cut(s) 479, 708, 827
Tru9I TTAA 3 cut(s) 479, 708, 827
TscAI CASTG 4 cut(s) 178, 313, 328, 701
TseI GCWGC 4 cut(s) 103, 257, 326, 378
TspDTI ATGAA 2 cut(s) 143, 719
TspRI CASTG 4 cut(s) 178, 313, 328, 701
Vha464I CTTAAG 1 cut(s) 707
XapI RAATTY 1 cut(s) 39
XceI RCATGY 1 cut(s) 820
XmaJI CCTAGG 1 cut(s) 116
XspI CTAG 8 cut(s) 117, 165, 219, 252, 269, 746, 920, 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.