Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000753.1

Orthogroup ID

OG0020726

Physical Location & Seq

Genomic Coordinates Forward (+)

7307 .. 8509

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atgtccaagtctaccaccctgcatgcaaagttggggagcattgagttgcagctcgatgttccgagcactggtcttgacatcagcaaaagaaaatggcattctgctttcattaccatctattgctctagagccttccactctttaagaccttctactcttcccaaacataccaactccacattcatatctcgcacactctcttactccatagttagggtcgagccagtctcggtgccagccatcaatggattcaaagcagaccaaaaaagcctcactgagcttgtgaaggagaaaaatctcaacaagctcttggagcttggaggggttcaagaagtagcatcagctctcaaaactgatgcagagcatggaatcaatggtgatgatgctgaagacattgcgtgcagacacgaagcatttggttccaacacatacaagaaaccgccaacgcaaggattcctccactttgtgtgggaagccttgaaagaccttacaattctcattcttttaggctgtgctgcgctctctcttggttttggtataaaagagcatggactaaaagaaggttggattgatggtggaagcatttgtctcgcagtcattctggtcatttctgtttcagcaataagcaactacagacagagcagacagtttgacaagttgtcgaaagtcagcaacaatctccagattgaggctgtgagaaatggaaggcgccaactgatttcaatattcgaaattgtggtgggtgatgtcatctgcttgaaaattggagatcaagttccagctgatggattacttctagagggccactctttatcagtagatgaatcaagcatgacaggggagagcgaccatgttgagataagtgtcactgagaatcctttcttgttctctgggactaaaatagctgatggttatggtcgcatgcttgtcacatcagtcgggatgaacacgaattggggtgaaatgatgagccaaattagccaagacaccagtgaaaagacacctctgcaagcacgtctagacacgctaacttcttcgataggtaaagttggtttggcagttgctttctttgttcttgtagtcatgctggtcagatacttcacagggaacaccgaggatgagaatggaaacaaagagtacaatggcagcaagaccaaatctgacgacataataaacgttgtcattgggattgtagacctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

400

Amino Acids

43.59

Weight (kDa)

5.84

Isoelectric Point (pI)

28.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	106 - 175	1.1e-13	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	231 - 326	2.7e-21	P-type ATPase actuator domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020726)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000753.1_g000002 Rmu_sc0000753.1_g000023
rosa_rugosa	Rorug03G0318100.1 Rorug03G0318800
rosa_samantha	Rh4CG023800 Rh4CG024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	232, 708
AccB7I	CCANNNNNTGG	1 cut(s)	785
AccI	GTMKAC	2 cut(s)	11, 1194
AciI	CCGC	1 cut(s)	440
AclI	AACGTT	1 cut(s)	1176
AcuI	CTGAAG	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	709
AdeI	CACNNNGTG	1 cut(s)	466
AfaI	GTAC	1 cut(s)	1139
AfiI	CCNNNNNNNGG	5 cut(s)	68, 213, 449, 688, 785
AgsI	TTSAA	5 cut(s)	253, 329, 481, 723, 760
AhdI	GACNNNNNGTC	1 cut(s)	658
AjiI	CACGTC	1 cut(s)	1016
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AloI	GAACNNNNNNTCC	2 cut(s)	759, 791
AluBI	AGCT	7 cut(s)	52, 280, 307, 316, 344, 782, 905
AluI	AGCT	7 cut(s)	52, 280, 307, 316, 344, 782, 905
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	2 cut(s)	232, 593
AoxI	GGCC	1 cut(s)	802
ApeKI	GCWGC	3 cut(s)	49, 515, 1146
Asp700I	GAANNNNTTC	1 cut(s)	878
AspLEI	GCGC	2 cut(s)	520, 711
AspS9I	GGNCC	1 cut(s)	802
AsuHPI	GGTGA	3 cut(s)	389, 755, 971
AsuII	TTCGAA	1 cut(s)	729
BanI	GGYRCC	2 cut(s)	232, 708
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	3 cut(s)	61, 502, 1158
BccI	CCATC	5 cut(s)	122, 248, 566, 779, 902
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BcoDI	GTCTC	2 cut(s)	232, 593
BfaI	CTAG	3 cut(s)	126, 797, 1019
BfmI	CTRYAG	2 cut(s)	631, 1199
BfoI	RGCGCY	1 cut(s)	712
BisI	GCNGC	3 cut(s)	50, 516, 1147
BlsI	GCNGC	3 cut(s)	51, 517, 1148
BmeRI	GACNNNNNGTC	1 cut(s)	658
BmgBI	CACGTC	1 cut(s)	1016
BmgT120I	GGNCC	1 cut(s)	802
BmiI	GGNNCC	3 cut(s)	234, 421, 710
BmsI	GCATC	3 cut(s)	346, 347, 373
BpiI	GAAGAC	1 cut(s)	396
BplI	GAGNNNNNCTC	4 cut(s)	212, 244, 791, 823
BpmI	CTGGAG	1 cut(s)	665
Bpu14I	TTCGAA	1 cut(s)	729
BsaHI	GRCGYC	1 cut(s)	709
BsaJI	CCNNGG	1 cut(s)	1113
BsaXI	ACNNNNNCTCC	2 cut(s)	759, 789
Bsc4I	CCNNNNNNNGG	5 cut(s)	68, 213, 449, 688, 785
Bse1I	ACTGG	3 cut(s)	73, 224, 990
Bse3DI	GCAATG	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	1113
BseGI	GGATG	2 cut(s)	948, 1123
BseLI	CCNNNNNNNGG	5 cut(s)	68, 213, 449, 688, 785
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	2 cut(s)	267, 861
BseNI	ACTGG	3 cut(s)	73, 224, 990
BseXI	GCAGC	3 cut(s)	61, 502, 1158
BsgI	GTGCAG	1 cut(s)	421
BshFI	GGCC	1 cut(s)	804
BshNI	GGYRCC	2 cut(s)	232, 708
BsiHKAI	GWGCWC	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	907
BslI	CCNNNNNNNGG	5 cut(s)	68, 213, 449, 688, 785
BsmAI	GTCTC	2 cut(s)	232, 593
BsmFI	GGGAC	1 cut(s)	907
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	804
Bsp119I	TTCGAA	1 cut(s)	729
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	769
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	1 cut(s)	804
BspCNI	CTCAG	2 cut(s)	268, 862
BspLI	GGNNCC	3 cut(s)	234, 421, 710
BspT104I	TTCGAA	1 cut(s)	729
BspT107I	GGYRCC	2 cut(s)	232, 708
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	3 cut(s)	73, 224, 990
BssECI	CCNNGG	1 cut(s)	1113
BssMI	GATC	1 cut(s)	769
BssNI	GRCGYC	1 cut(s)	709
Bst4CI	ACNGT	1 cut(s)	648
Bst6I	CTCTTC	1 cut(s)	162
BstACI	GRCGYC	1 cut(s)	709
BstBI	TTCGAA	1 cut(s)	729
BstC8I	GCNNGC	5 cut(s)	24, 237, 400, 923, 1011
BstDEI	CTNAG	2 cut(s)	276, 870
BstF5I	GGATG	2 cut(s)	948, 1123
BstH2I	RGCGCY	1 cut(s)	712
BstHHI	GCGC	2 cut(s)	520, 711
BstKTI	GATC	1 cut(s)	772
BstMAI	GTCTC	2 cut(s)	232, 593
BstMBI	GATC	1 cut(s)	769
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 978
BstNSI	RCATGY	2 cut(s)	26, 925
BstSFI	CTRYAG	2 cut(s)	631, 1199
BstV1I	GCAGC	3 cut(s)	61, 502, 1158
BstV2I	GAAGAC	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	804
BtrI	CACGTC	1 cut(s)	1016
BtsCI	GGATG	2 cut(s)	948, 1123
BtsIMutI	CAGTG	4 cut(s)	66, 273, 867, 997
Cac8I	GCNNGC	5 cut(s)	24, 237, 400, 923, 1011
CfoI	GCGC	2 cut(s)	520, 711
Cfr13I	GGNCC	1 cut(s)	802
Csp6I	GTAC	1 cut(s)	1138
CviAII	CATG	7 cut(s)	23, 365, 548, 832, 851, 922, 1084
CviQI	GTAC	1 cut(s)	1138
DdeI	CTNAG	2 cut(s)	276, 870
DinI	GGCGCC	1 cut(s)	710
DpnI	GATC	1 cut(s)	771
DpnII	GATC	1 cut(s)	769
DraIII	CACNNNGTG	1 cut(s)	466
DriI	GACNNNNNGTC	1 cut(s)	658
Eam1104I	CTCTTC	1 cut(s)	162
Eam1105I	GACNNNNNGTC	1 cut(s)	658
EarI	CTCTTC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	408
EgeI	GGCGCC	1 cut(s)	710
EheI	GGCGCC	1 cut(s)	710
FaeI	CATG	7 cut(s)	26, 368, 551, 835, 854, 925, 1087
FaqI	GGGAC	1 cut(s)	907
FatI	CATG	7 cut(s)	22, 364, 547, 831, 850, 921, 1083
FblI	GTMKAC	2 cut(s)	11, 1194
Fnu4HI	GCNGC	3 cut(s)	50, 516, 1147
FokI	GGATG	2 cut(s)	955, 1130
Fsp4HI	GCNGC	3 cut(s)	50, 516, 1147
FspBI	CTAG	3 cut(s)	126, 797, 1019
GlaI	GCGC	2 cut(s)	519, 710
GluI	GCNGC	3 cut(s)	50, 516, 1147
GsuI	CTGGAG	1 cut(s)	665
HaeII	RGCGCY	1 cut(s)	712
HaeIII	GGCC	1 cut(s)	804
HhaI	GCGC	2 cut(s)	520, 711
Hin1I	GRCGYC	1 cut(s)	709
Hin1II	CATG	7 cut(s)	26, 368, 551, 835, 854, 925, 1087
Hin6I	GCGC	2 cut(s)	518, 709
HinP1I	GCGC	2 cut(s)	518, 709
HinfI	GANTC	5 cut(s)	249, 369, 453, 824, 874
HphI	GGTGA	3 cut(s)	389, 755, 971
Hpy166II	GTNNAC	2 cut(s)	12, 1195
Hpy188I	TCNGA	3 cut(s)	63, 1094, 1162
Hpy188III	TCNNGA	7 cut(s)	74, 126, 329, 682, 797, 940, 1019
Hpy8I	GTNNAC	2 cut(s)	12, 1195
HpyAV	CCTTC	5 cut(s)	142, 159, 280, 554, 699
HpyCH4III	ACNGT	1 cut(s)	648
HpyCH4IV	ACGT	2 cut(s)	1015, 1176
HpyCH4V	TGCA	6 cut(s)	22, 26, 49, 359, 402, 1009
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 978
HpyF3I	CTNAG	2 cut(s)	276, 870
HpySE526I	ACGT	2 cut(s)	1015, 1176
Hsp92I	GRCGYC	1 cut(s)	709
Hsp92II	CATG	7 cut(s)	26, 368, 551, 835, 854, 925, 1087
HspAI	GCGC	2 cut(s)	518, 709
KasI	GGCGCC	1 cut(s)	708
Kzo9I	GATC	1 cut(s)	769
LmnI	GCTCC	2 cut(s)	36, 313
Lsp1109I	GCAGC	3 cut(s)	61, 502, 1158
LweI	GCATC	3 cut(s)	346, 347, 373
MaeI	CTAG	3 cut(s)	126, 797, 1019
MaeII	ACGT	2 cut(s)	1015, 1176
MaeIII	GTNAC	2 cut(s)	865, 928
MalI	GATC	1 cut(s)	771
MboI	GATC	1 cut(s)	769
MboII	GAAGA	3 cut(s)	149, 401, 1026
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	5 cut(s)	492, 732, 762, 952, 975
Mly113I	GGCGCC	1 cut(s)	709
MmeI	TCCRAC	2 cut(s)	447, 545
MnlI	CCTC	7 cut(s)	281, 314, 467, 682, 793, 1014, 1108
MroXI	GAANNNNTTC	1 cut(s)	878
MseI	TTAA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	782
Mva1269I	GAATGC	1 cut(s)	97
MwoI	GCNNNNNNNGC	2 cut(s)	313, 978
NarI	GGCGCC	1 cut(s)	709
NdeII	GATC	1 cut(s)	769
NlaIII	CATG	7 cut(s)	26, 368, 551, 835, 854, 925, 1087
NlaIV	GGNNCC	3 cut(s)	234, 421, 710
NmuCI	GTSAC	2 cut(s)	865, 928
NspI	RCATGY	2 cut(s)	26, 925
NspV	TTCGAA	1 cut(s)	729
PaeI	GCATGC	2 cut(s)	26, 925
PctI	GAATGC	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	878
PfeI	GAWTC	5 cut(s)	249, 369, 453, 824, 874
PflMI	CCANNNNNTGG	1 cut(s)	785
PkrI	GCNGC	3 cut(s)	51, 517, 1148
PluTI	GGCGCC	1 cut(s)	712
Psp1406I	AACGTT	1 cut(s)	1176
PspN4I	GGNNCC	3 cut(s)	234, 421, 710
PspPI	GGNCC	1 cut(s)	802
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	1 cut(s)	1139
RsaNI	GTAC	1 cut(s)	1138
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	3 cut(s)	50, 516, 1147
Sau3AI	GATC	1 cut(s)	769
Sau96I	GGNCC	1 cut(s)	802
SduI	GDGCHC	1 cut(s)	68
SfaNI	GCATC	3 cut(s)	346, 347, 373
SfcI	CTRYAG	2 cut(s)	631, 1199
SfoI	GGCGCC	1 cut(s)	710
SfuI	TTCGAA	1 cut(s)	729
SphI	GCATGC	2 cut(s)	26, 925
Sse9I	AATT	5 cut(s)	492, 732, 762, 952, 975
SsiI	CCGC	1 cut(s)	440
SspDI	GGCGCC	1 cut(s)	708
SspI	AATATT	1 cut(s)	726
SspMI	CTAG	3 cut(s)	126, 797, 1019
TaaI	ACNGT	1 cut(s)	648
TaiI	ACGT	2 cut(s)	1018, 1179
TaqI	TCGA	5 cut(s)	54, 219, 662, 729, 1037
TasI	AATT	5 cut(s)	492, 732, 762, 952, 975
TatI	WGTACW	1 cut(s)	1137
TfiI	GAWTC	5 cut(s)	249, 369, 453, 824, 874
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	4 cut(s)	73, 280, 874, 997
TseFI	GTSAC	2 cut(s)	865, 928
TseI	GCWGC	3 cut(s)	49, 515, 1146
Tsp45I	GTSAC	2 cut(s)	865, 928
TspDTI	ATGAA	4 cut(s)	97, 172, 837, 959
TspRI	CASTG	4 cut(s)	73, 280, 874, 997
Van91I	CCANNNNNTGG	1 cut(s)	785
XbaI	TCTAGA	3 cut(s)	125, 796, 1018
XceI	RCATGY	2 cut(s)	26, 925
XmiI	GTMKAC	2 cut(s)	11, 1194
XmnI	GAANNNNTTC	1 cut(s)	878
XspI	CTAG	3 cut(s)	126, 797, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.