Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0020726

Physical Location & Seq

Genomic Coordinates Reverse (-)

4629180 .. 4630019

Gene Structure 840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG024200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAGTAAGTCAACCTTCAGTGCCCTGCATGAAAAAGTGGGAAGCAATAATGGGTTGATTCTTGATGTTCCGAGAAGTAGTCTTGGCATGATCAAAAGAAAATGGCATTCTGCTTTCATTACCATCTATTTCTCTAGAGCCTTCCTCTCTTTACGACCTTCTACTCTTCCCAAACATACCAACTCCACATTCATATCTCGCACACTCTCTTACTCCATTGTTAGAGTTGAGCCAGCCTTGGTCCCAACCATTAATGGATTCAAAGCAGACCAAAAAAGCCTCACTACGCTTGTGAAGGAGAAAAATCCCAAGGAGCTCTTGGATCTTGGAGGGGTTGAAGAAGTAGCATCAGCTCTCAAAACTGATGCAGAGCATGGAATCAATGGTGATGATGATGCTGAAGACACTGGGCGCAGACATCAAGAATTTGGTTCCAACACATACAAGAAACCACCAACGCAAGGATTCCTTCATTTTGTGTGGGAAGCCTTCAAAGACGTCACAATTCTCATTCTTATAGGCTGTGCTGCACTCTCTCTTGGTTTCGGTATCAAAGAGCATGGATTAAAAGAAGGTTGGATTGATGGTGGAAGCATTTGTCTTGCGGTCATTCTGGTCATTTCTGTTTCAGCCATTAGCAACTACAGACAGAGCAGACAATTTGACAAATTGTCCGAGGTCAGTAGCAATCTCCAAATTGAGGCCGTGAGAAATGAAAGGCGCCAACAGATTTCAATATTTGAAATTGTGGTTAGTGATGTCATCTGCTTGAAGATTGGAGATCAAGTACCAGCAGATGGATTGCTTCTAGATGGCCATACTTTATCAGTAGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

279

Amino Acids

30.74

Weight (kDa)

7.1

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	109 - 179	1.7e-14	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	234 - 278	6.3e-06	P-type ATPase actuator domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0020726)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000753.1_g000002 Rmu_sc0000753.1_g000023
rosa_rugosa	Rorug03G0318100.1 Rorug03G0318800
rosa_samantha	Rh4CG023800 Rh4CG024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	501
AccB1I	GGYRCC	1 cut(s)	720
AccB7I	CCANNNNNTGG	1 cut(s)	797
AciI	CCGC	1 cut(s)	605
AclWI	GGATC	1 cut(s)	330
AcoI	YGGCCR	1 cut(s)	814
AcsI	RAATTY	1 cut(s)	425
AcuI	CTGAAG	1 cut(s)	420
AcyI	GRCGYC	2 cut(s)	498, 721
AfaI	GTAC	1 cut(s)	789
AfiI	CCNNNNNNNGG	3 cut(s)	461, 700, 797
AgsI	TTSAA	6 cut(s)	262, 338, 493, 735, 743, 772
AhdI	GACNNNNNGTC	1 cut(s)	670
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	2 cut(s)	316, 353
AluI	AGCT	2 cut(s)	316, 353
Alw21I	GWGCWC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	330
AoxI	GGCC	2 cut(s)	702, 814
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	1 cut(s)	425
AseI	ATTAAT	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	414, 723
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	241
BaeGI	GKGCMC	1 cut(s)	25
BalI	TGGCCA	1 cut(s)	816
BanI	GGYRCC	1 cut(s)	720
BanII	GRGCYC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	4 cut(s)	131, 578, 791, 806
BceAI	ACGGC	1 cut(s)	689
BclI	TGATCA	1 cut(s)	90
BfaI	CTAG	2 cut(s)	135, 809
BfmI	CTRYAG	1 cut(s)	643
BfoI	RGCGCY	1 cut(s)	724
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
Bme18I	GGWCC	1 cut(s)	241
BmeRI	GACNNNNNGTC	1 cut(s)	670
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	3 cut(s)	243, 433, 722
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	3 cut(s)	355, 356, 385
BmuI	ACTGGG	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	408
BplI	GAGNNNNNCTC	2 cut(s)	129, 161
Bsa29I	ATCGAT	1 cut(s)	835
BsaHI	GRCGYC	2 cut(s)	498, 721
BsaJI	CCNNGG	3 cut(s)	237, 309, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	771, 801
Bsc4I	CCNNNNNNNGG	3 cut(s)	461, 700, 797
Bse1I	ACTGG	1 cut(s)	412
BseCI	ATCGAT	1 cut(s)	835
BseDI	CCNNGG	3 cut(s)	237, 309, 675
BseLI	CCNNNNNNNGG	3 cut(s)	461, 700, 797
BseNI	ACTGG	1 cut(s)	412
BseSI	GKGCMC	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	514
BsgI	GTGCAG	1 cut(s)	513
BshFI	GGCC	2 cut(s)	704, 816
BshNI	GGYRCC	1 cut(s)	720
BshVI	ATCGAT	1 cut(s)	835
BsiHKAI	GWGCWC	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	3 cut(s)	461, 700, 797
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	704, 816
Bsp1286I	GDGCHC	2 cut(s)	25, 318
Bsp143I	GATC	4 cut(s)	90, 322, 781, 832
BspACI	CCGC	1 cut(s)	605
BspANI	GGCC	2 cut(s)	704, 816
BspDI	ATCGAT	1 cut(s)	835
BspLI	GGNNCC	3 cut(s)	243, 433, 722
BspPI	GGATC	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	720
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	3 cut(s)	237, 309, 675
BssMI	GATC	4 cut(s)	90, 322, 781, 832
BssNI	GRCGYC	2 cut(s)	498, 721
BssT1I	CCWWGG	2 cut(s)	237, 309
Bst6I	CTCTTC	1 cut(s)	171
BstACI	GRCGYC	2 cut(s)	498, 721
BstC8I	GCNNGC	1 cut(s)	234
BstH2I	RGCGCY	1 cut(s)	724
BstHHI	GCGC	2 cut(s)	414, 723
BstKTI	GATC	4 cut(s)	93, 325, 784, 835
BstMBI	GATC	4 cut(s)	90, 322, 781, 832
BstSFI	CTRYAG	1 cut(s)	643
BstSLI	GKGCMC	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
Bsu15I	ATCGAT	1 cut(s)	835
BsuRI	GGCC	2 cut(s)	704, 816
BsuTUI	ATCGAT	1 cut(s)	835
BtsIMutI	CAGTG	2 cut(s)	25, 405
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	2 cut(s)	414, 723
Cfr13I	GGNCC	1 cut(s)	241
ClaI	ATCGAT	1 cut(s)	835
Csp6I	GTAC	1 cut(s)	788
CviAII	CATG	4 cut(s)	29, 88, 374, 560
CviQI	GTAC	1 cut(s)	788
DinI	GGCGCC	1 cut(s)	722
DpnI	GATC	4 cut(s)	92, 324, 783, 834
DpnII	GATC	4 cut(s)	90, 322, 781, 832
DriI	GACNNNNNGTC	1 cut(s)	670
EaeI	YGGCCR	1 cut(s)	814
Eam1104I	CTCTTC	1 cut(s)	171
Eam1105I	GACNNNNNGTC	1 cut(s)	670
EarI	CTCTTC	1 cut(s)	171
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	2 cut(s)	237, 309
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	420
EcoICRI	GAGCTC	1 cut(s)	316
EcoT14I	CCWWGG	2 cut(s)	237, 309
EcoT38I	GRGCYC	1 cut(s)	318
EgeI	GGCGCC	1 cut(s)	722
EheI	GGCGCC	1 cut(s)	722
ErhI	CCWWGG	2 cut(s)	237, 309
FaeI	CATG	4 cut(s)	32, 91, 377, 563
FaiI	YATR	9 cut(s)	30, 89, 177, 194, 375, 442, 518, 561, 819
FalI	AAGNNNNNCTT	5 cut(s)	31, 302, 334, 453, 485
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	4 cut(s)	28, 87, 373, 559
FbaI	TGATCA	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	528
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	528
FspBI	CTAG	2 cut(s)	135, 809
GlaI	GCGC	2 cut(s)	413, 722
GluI	GCNGC	1 cut(s)	528
HaeII	RGCGCY	1 cut(s)	724
HaeIII	GGCC	2 cut(s)	704, 816
HhaI	GCGC	2 cut(s)	414, 723
Hin1I	GRCGYC	2 cut(s)	498, 721
Hin1II	CATG	4 cut(s)	32, 91, 377, 563
Hin6I	GCGC	2 cut(s)	412, 721
HinP1I	GCGC	2 cut(s)	412, 721
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	4 cut(s)	58, 258, 378, 465
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	2 cut(s)	72, 676
Hpy188III	TCNNGA	4 cut(s)	62, 135, 422, 809
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	7 cut(s)	25, 151, 168, 289, 479, 499, 566
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	3 cut(s)	28, 368, 530
HpySE526I	ACGT	1 cut(s)	498
Hsp92I	GRCGYC	2 cut(s)	498, 721
Hsp92II	CATG	4 cut(s)	32, 91, 377, 563
HspAI	GCGC	2 cut(s)	412, 721
KasI	GGCGCC	1 cut(s)	720
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	4 cut(s)	90, 322, 781, 832
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	5 cut(s)	38, 246, 393, 599, 804
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	3 cut(s)	355, 356, 385
MaeI	CTAG	2 cut(s)	135, 809
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	4 cut(s)	92, 324, 783, 834
MboI	GATC	4 cut(s)	90, 322, 781, 832
MboII	GAAGA	4 cut(s)	158, 350, 413, 784
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	2 cut(s)	25, 318
MlsI	TGGCCA	1 cut(s)	816
MluCI	AATT	6 cut(s)	425, 504, 659, 668, 696, 744
MluNI	TGGCCA	1 cut(s)	816
Mly113I	GGCGCC	1 cut(s)	721
MmeI	TCCRAC	2 cut(s)	459, 557
MnlI	CCTC	5 cut(s)	155, 290, 323, 670, 694
Mox20I	TGGCCA	1 cut(s)	816
MscI	TGGCCA	1 cut(s)	816
MseI	TTAA	2 cut(s)	252, 566
Msp20I	TGGCCA	1 cut(s)	816
Mva1269I	GAATGC	1 cut(s)	106
NarI	GGCGCC	1 cut(s)	721
NdeII	GATC	4 cut(s)	90, 322, 781, 832
NlaIII	CATG	4 cut(s)	32, 91, 377, 563
NlaIV	GGNNCC	3 cut(s)	243, 433, 722
NmuCI	GTSAC	1 cut(s)	499
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	4 cut(s)	58, 258, 378, 465
PflMI	CCANNNNNTGG	1 cut(s)	797
PkrI	GCNGC	1 cut(s)	529
PluTI	GGCGCC	1 cut(s)	724
PshBI	ATTAAT	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	318
PspN4I	GGNNCC	3 cut(s)	243, 433, 722
PspPI	GGNCC	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	1 cut(s)	789
RsaNI	GTAC	1 cut(s)	788
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	252, 566
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	4 cut(s)	90, 322, 781, 832
Sau96I	GGNCC	1 cut(s)	241
SduI	GDGCHC	2 cut(s)	25, 318
SetI	ASST	7 cut(s)	17, 160, 318, 355, 501, 577, 681
SfaNI	GCATC	3 cut(s)	355, 356, 385
SfcI	CTRYAG	1 cut(s)	643
SfoI	GGCGCC	1 cut(s)	722
SinI	GGWCC	1 cut(s)	241
Sse9I	AATT	6 cut(s)	425, 504, 659, 668, 696, 744
SsiI	CCGC	1 cut(s)	605
SspDI	GGCGCC	1 cut(s)	720
SspI	AATATT	1 cut(s)	738
SspMI	CTAG	2 cut(s)	135, 809
SstI	GAGCTC	1 cut(s)	318
StyI	CCWWGG	2 cut(s)	237, 309
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	1 cut(s)	835
TasI	AATT	6 cut(s)	425, 504, 659, 668, 696, 744
TfiI	GAWTC	4 cut(s)	58, 258, 378, 465
Tru1I	TTAA	2 cut(s)	252, 566
Tru9I	TTAA	2 cut(s)	252, 566
TscAI	CASTG	2 cut(s)	25, 412
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	5 cut(s)	45, 106, 181, 461, 729
TspRI	CASTG	2 cut(s)	25, 412
Van91I	CCANNNNNTGG	1 cut(s)	797
VpaK11BI	GGWCC	1 cut(s)	241
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	1 cut(s)	425
XbaI	TCTAGA	2 cut(s)	134, 808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XspI	CTAG	2 cut(s)	135, 809
ZraI	GACGTC	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.