Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0020726

Physical Location & Seq

Genomic Coordinates Reverse (-)

4549182 .. 4565906

Gene Structure 16725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG023800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGTCGAGCCAGTCTCCGTCCCAGCCACTAATGGATTCAAAGCAGACCAAAAGAGCCTCACTGAGCTTGTGAAGGAGAAAAATCTCAACAAGCTCTTGGAGCTTGGAGGGGTTGAAGAAGTAGCATCAGCTCTCAAACCTGATGCAGAGAATGGAATCAATGGTGATGATGCTGAAGACATTGCGCACAGACACGAAGCATTTGGATCCAACACATACAAGAAACCTCCAACGCAAGGATTCCTCCATTTTGTGAGTGAAGCCTTCAAAGAACTCACAATCCTAATCCTCTTGGGATGTGCTGCGCTTTCTCTTGGTATCAGCATCAAAGAACAAGGATTGAAAGAAGGTTGGATTGACGGTGGAAGCATTTGTCTTGCAGTCATTCTGGTCATTTCTGTTTCAGCCATAAGCAACTACAGACAGAGCAGACGGTTTGACAAGCTGTCCAAAGTTAGCAACAATCTCCAAATTGAGGCTGTAAGAAATGGAAGGCGCCAACTGCTTTCATTATTCGAAATTGTGGTGGGTGATGTCATCTGCTTGAAAATTGGAGACCAAGTTCCAGCTGATGGATTACTTCTCGAAGGCCACTCTTTATCAGTAGACGAATCAAGCATAACAGGGGAGAACGACCATGTTGAGATTACTGTCACTGAGAATCCTTTCTTGTTTTCTGGGACTAAAATCGCTGATGGTTATGGCCGGATACTTGTCATGTCAGTCGGGATGAACACGAACTGGGGTGAAAAGATGAGCCGAATCAGCCAAGACACCATTGAAAAGACACCTCTGCAAGCACGTCTAGACAAGCTAACATCGTCGATGGGTAAAGTTGGTTTGGCAGTTGCTTTCTTTGTTCTTGTAGTCATGTTGGTCCGGTACTTCACAGGGAATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

300

Amino Acids

32.55

Weight (kDa)

5.38

Isoelectric Point (pI)

29.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	35 - 104	1.1e-12	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	160 - 252	1.8e-19	P-type ATPase actuator domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0020726)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000753.1_g000002 Rmu_sc0000753.1_g000023
rosa_rugosa	Rorug03G0318100.1 Rorug03G0318800
rosa_samantha	Rh4CG023800 Rh4CG024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	495
AccB7I	CCANNNNNTGG	1 cut(s)	572
AccI	GTMKAC	1 cut(s)	606
AclWI	GGATC	2 cut(s)	201, 214
AcoI	YGGCCR	1 cut(s)	703
AcuI	CTGAAG	1 cut(s)	195
AcyI	GRCGYC	1 cut(s)	496
AfaI	GTAC	1 cut(s)	884
AfiI	CCNNNNNNNGG	3 cut(s)	236, 475, 572
AgsI	TTSAA	6 cut(s)	40, 116, 268, 343, 547, 782
AhdI	GACNNNNNGTC	1 cut(s)	445
AjiI	CACGTC	1 cut(s)	803
AloI	GAACNNNNNNTCC	4 cut(s)	264, 296, 546, 578
AluBI	AGCT	7 cut(s)	67, 94, 103, 131, 445, 569, 814
AluI	AGCT	7 cut(s)	67, 94, 103, 131, 445, 569, 814
Alw26I	GTCTC	2 cut(s)	19, 549
AlwI	GGATC	2 cut(s)	201, 214
AoxI	GGCC	2 cut(s)	589, 703
ApeKI	GCWGC	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	665
AspLEI	GCGC	3 cut(s)	187, 307, 498
AspS9I	GGNCC	1 cut(s)	877
AsuHPI	GGTGA	3 cut(s)	176, 542, 758
AsuII	TTCGAA	1 cut(s)	516
AvaII	GGWCC	1 cut(s)	877
BamHI	GGATCC	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	3 cut(s)	566, 689, 820
BciVI	GTATCC	1 cut(s)	702
BcoDI	GTCTC	2 cut(s)	19, 549
BfaI	CTAG	1 cut(s)	806
BfmI	CTRYAG	1 cut(s)	418
BfoI	RGCGCY	1 cut(s)	499
BfuI	GTATCC	1 cut(s)	702
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme18I	GGWCC	1 cut(s)	877
BmeRI	GACNNNNNGTC	1 cut(s)	445
BmgBI	CACGTC	1 cut(s)	803
BmgT120I	GGNCC	1 cut(s)	877
BmiI	GGNNCC	2 cut(s)	208, 497
BmrI	ACTGGG	1 cut(s)	751
BmsI	GCATC	4 cut(s)	133, 134, 160, 333
BmuI	ACTGGG	1 cut(s)	751
BpiI	GAAGAC	1 cut(s)	183
BplI	GAGNNNNNCTC	1 cut(s)	31
Bpu14I	TTCGAA	1 cut(s)	516
BsaHI	GRCGYC	1 cut(s)	496
BsaI	GGTCTC	1 cut(s)	549
BsaWI	WCCGGW	1 cut(s)	879
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 475, 572
Bse1I	ACTGG	2 cut(s)	11, 746
Bse3DI	GCAATG	1 cut(s)	180
BseGI	GGATG	2 cut(s)	302, 735
BseLI	CCNNNNNNNGG	3 cut(s)	236, 475, 572
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	54, 648
BseNI	ACTGG	2 cut(s)	11, 746
BseXI	GCAGC	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	22
BshFI	GGCC	2 cut(s)	591, 705
BshNI	GGYRCC	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	706, 880
BslFI	GGGAC	2 cut(s)	5, 694
BslI	CCNNNNNNNGG	3 cut(s)	236, 475, 572
BsmAI	GTCTC	2 cut(s)	19, 549
BsmFI	GGGAC	2 cut(s)	5, 694
BsnI	GGCC	2 cut(s)	591, 705
Bso31I	GGTCTC	1 cut(s)	549
Bsp119I	TTCGAA	1 cut(s)	516
Bsp143I	GATC	1 cut(s)	206
BspANI	GGCC	2 cut(s)	591, 705
BspCNI	CTCAG	2 cut(s)	55, 649
BspLI	GGNNCC	2 cut(s)	208, 497
BspPI	GGATC	2 cut(s)	201, 214
BspT104I	TTCGAA	1 cut(s)	516
BspT107I	GGYRCC	1 cut(s)	495
BspTNI	GGTCTC	1 cut(s)	549
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	11, 746
BssMI	GATC	1 cut(s)	206
BssNI	GRCGYC	1 cut(s)	496
Bst4CI	ACNGT	3 cut(s)	362, 435, 652
BstACI	GRCGYC	1 cut(s)	496
BstBI	TTCGAA	1 cut(s)	516
BstC8I	GCNNGC	1 cut(s)	798
BstDEI	CTNAG	2 cut(s)	63, 657
BstF5I	GGATG	2 cut(s)	302, 735
BstH2I	RGCGCY	1 cut(s)	499
BstHHI	GCGC	3 cut(s)	187, 307, 498
BstKTI	GATC	1 cut(s)	209
BstMAI	GTCTC	2 cut(s)	19, 549
BstMBI	GATC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 502, 765
BstSFI	CTRYAG	1 cut(s)	418
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BsuI	GTATCC	1 cut(s)	702
BsuRI	GGCC	2 cut(s)	591, 705
BtrI	CACGTC	1 cut(s)	803
BtsCI	GGATG	2 cut(s)	302, 735
BtsIMutI	CAGTG	2 cut(s)	60, 654
Cac8I	GCNNGC	1 cut(s)	798
CfoI	GCGC	3 cut(s)	187, 307, 498
Cfr13I	GGNCC	1 cut(s)	877
Csp6I	GTAC	1 cut(s)	883
CviAII	CATG	3 cut(s)	638, 718, 871
CviQI	GTAC	1 cut(s)	883
DdeI	CTNAG	2 cut(s)	63, 657
DinI	GGCGCC	1 cut(s)	497
DpnI	GATC	1 cut(s)	208
DpnII	GATC	1 cut(s)	206
DriI	GACNNNNNGTC	1 cut(s)	445
EaeI	YGGCCR	1 cut(s)	703
Eam1105I	GACNNNNNGTC	1 cut(s)	445
Eco31I	GGTCTC	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	877
Eco57I	CTGAAG	1 cut(s)	195
EgeI	GGCGCC	1 cut(s)	497
EheI	GGCGCC	1 cut(s)	497
FaeI	CATG	3 cut(s)	641, 721, 874
FaiI	YATR	8 cut(s)	217, 410, 620, 639, 702, 719, 872, 901
FaqI	GGGAC	2 cut(s)	5, 694
FatI	CATG	3 cut(s)	637, 717, 870
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	2 cut(s)	309, 742
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	806
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	3 cut(s)	186, 306, 497
GluI	GCNGC	1 cut(s)	303
GsaI	CCCAGC	1 cut(s)	26
HaeII	RGCGCY	1 cut(s)	499
HaeIII	GGCC	2 cut(s)	591, 705
HapII	CCGG	2 cut(s)	706, 880
HhaI	GCGC	3 cut(s)	187, 307, 498
Hin1I	GRCGYC	1 cut(s)	496
Hin1II	CATG	3 cut(s)	641, 721, 874
Hin6I	GCGC	3 cut(s)	185, 305, 496
HinP1I	GCGC	3 cut(s)	185, 305, 496
HinfI	GANTC	6 cut(s)	36, 156, 240, 611, 661, 762
HpaII	CCGG	2 cut(s)	706, 880
HphI	GGTGA	3 cut(s)	176, 542, 758
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188III	TCNNGA	3 cut(s)	584, 727, 806
Hpy8I	GTNNAC	1 cut(s)	607
Hpy99I	CGWCG	1 cut(s)	826
HpyAV	CCTTC	5 cut(s)	67, 274, 341, 486, 581
HpyCH4III	ACNGT	3 cut(s)	362, 435, 652
HpyCH4IV	ACGT	1 cut(s)	802
HpyCH4V	TGCA	3 cut(s)	146, 380, 796
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 502, 765
HpyF3I	CTNAG	2 cut(s)	63, 657
HpySE526I	ACGT	1 cut(s)	802
Hsp92I	GRCGYC	1 cut(s)	496
Hsp92II	CATG	3 cut(s)	641, 721, 874
HspAI	GCGC	3 cut(s)	185, 305, 496
KasI	GGCGCC	1 cut(s)	495
Kzo9I	GATC	1 cut(s)	206
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	4 cut(s)	133, 134, 160, 333
MaeI	CTAG	1 cut(s)	806
MaeII	ACGT	1 cut(s)	802
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	1 cut(s)	208
MboI	GATC	1 cut(s)	206
MboII	GAAGA	2 cut(s)	128, 188
MflI	RGATCY	1 cut(s)	206
MluCI	AATT	3 cut(s)	471, 519, 549
Mly113I	GGCGCC	1 cut(s)	496
MmeI	TCCRAC	3 cut(s)	234, 254, 332
MnlI	CCTC	7 cut(s)	68, 101, 237, 254, 299, 469, 801
MroXI	GAANNNNTTC	1 cut(s)	665
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	2 cut(s)	706, 880
MwoI	GCNNNNNNNGC	3 cut(s)	100, 502, 765
NarI	GGCGCC	1 cut(s)	496
NdeII	GATC	1 cut(s)	206
NlaIII	CATG	3 cut(s)	641, 721, 874
NlaIV	GGNNCC	2 cut(s)	208, 497
NmuCI	GTSAC	1 cut(s)	652
NsbI	TGCGCA	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	665
PfeI	GAWTC	6 cut(s)	36, 156, 240, 611, 661, 762
PflMI	CCANNNNNTGG	1 cut(s)	572
PkrI	GCNGC	1 cut(s)	304
PluTI	GGCGCC	1 cut(s)	499
PspFI	CCCAGC	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	208, 497
PspPI	GGNCC	1 cut(s)	877
PsuI	RGATCY	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	1 cut(s)	884
RsaNI	GTAC	1 cut(s)	883
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	1 cut(s)	206
Sau96I	GGNCC	1 cut(s)	877
SfaNI	GCATC	4 cut(s)	133, 134, 160, 333
SfcI	CTRYAG	1 cut(s)	418
SfoI	GGCGCC	1 cut(s)	497
SfuI	TTCGAA	1 cut(s)	516
SinI	GGWCC	1 cut(s)	877
Sse9I	AATT	3 cut(s)	471, 519, 549
SspDI	GGCGCC	1 cut(s)	495
SspMI	CTAG	1 cut(s)	806
TaaI	ACNGT	3 cut(s)	362, 435, 652
TaiI	ACGT	1 cut(s)	805
TaqI	TCGA	4 cut(s)	6, 516, 585, 824
TasI	AATT	3 cut(s)	471, 519, 549
TfiI	GAWTC	6 cut(s)	36, 156, 240, 611, 661, 762
TscAI	CASTG	2 cut(s)	67, 661
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	2 cut(s)	498, 746
TspGWI	ACGGA	1 cut(s)	7
TspRI	CASTG	2 cut(s)	67, 661
Van91I	CCANNNNNTGG	1 cut(s)	572
VpaK11BI	GGWCC	1 cut(s)	877
XbaI	TCTAGA	1 cut(s)	805
XmiI	GTMKAC	1 cut(s)	606
XmnI	GAANNNNTTC	1 cut(s)	665
XspI	CTAG	1 cut(s)	806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.