Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000753.1

Orthogroup ID

OG0020726

Physical Location & Seq

Genomic Coordinates Forward (+)

120216 .. 120854

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000753.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgagtagatccttcggttccctgcaagcaaaagtgggaagcaacgtcgggttgattcttgatgttccgagcagtaatcttggcataagaaaaagaaaatggcattctgctttcaataccatctattgctctagagccttcctctctttacgaccttccactcttcccaaacataccaactccacactcatatctcccacactctcttactccattgttagggtcgagccagtctcggtcccagccattaatggattcaaagcagaccaaaaaagcctcactgagcttgtgaaggagaaaaatctcaacaagctcttggagattggaagggttgaagaagtagcatcagctctcaaaactgatgcagagaatggaatcaatggtgatgatgctgaagacattgcgcgcagacacgaagcatttggatccaacacatacaagaaacctccaacgcaaggattcctccattttgtgtgtgaagccttcaaagaactcacaatcctaatcctcttgggatgtgctgcgctttctcttggtatcagcatcaaagaacaaggattgaaagaaggttggattgacggtggaagcatttgtcttgcagtcattctggtcatttctgtttcagccataagcaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

212

Amino Acids

22.91

Weight (kDa)

8.88

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020726)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000753.1_g000002 Rmu_sc0000753.1_g000023
rosa_rugosa	Rorug03G0318100.1 Rorug03G0318800
rosa_samantha	Rh4CG023800 Rh4CG024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	406
AclWI	GGATC	3 cut(s)	3, 420, 433
AcuI	CTGAAG	1 cut(s)	414
AfiI	CCNNNNNNNGG	2 cut(s)	219, 455
AgsI	TTSAA	5 cut(s)	115, 259, 335, 487, 562
AloI	GAACNNNNNNTCC	2 cut(s)	483, 515
AluBI	AGCT	3 cut(s)	286, 313, 350
AluI	AGCT	3 cut(s)	286, 313, 350
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	3 cut(s)	3, 420, 433
ApeKI	GCWGC	1 cut(s)	521
AseI	ATTAAT	1 cut(s)	249
AspLEI	GCGC	3 cut(s)	406, 408, 526
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	2 cut(s)	132, 637
BisI	GCNGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	523
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	3 cut(s)	19, 240, 427
BmsI	GCATC	4 cut(s)	352, 353, 379, 552
BpiI	GAAGAC	1 cut(s)	402
BplI	GAGNNNNNCTC	4 cut(s)	126, 158, 218, 250
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 455
Bse1I	ACTGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	399
BseGI	GGATG	1 cut(s)	521
BseLI	CCNNNNNNNGG	2 cut(s)	219, 455
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	230
BsePI	GCGCGC	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	508
BseYI	CCCAGC	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	406
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	219, 455
BsmAI	GTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	8, 425
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	406
BspLI	GGNNCC	3 cut(s)	19, 240, 427
BspPI	GGATC	3 cut(s)	3, 420, 433
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	230
BssHII	GCGCGC	1 cut(s)	404
BssMI	GATC	2 cut(s)	8, 425
Bst4CI	ACNGT	1 cut(s)	581
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	27, 406
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	521
BstFNI	CGCG	1 cut(s)	406
BstHHI	GCGC	3 cut(s)	406, 408, 526
BstKTI	GATC	2 cut(s)	11, 428
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	2 cut(s)	8, 425
BstUI	CGCG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	508
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	2 cut(s)	8, 425
BstYI	RGATCY	2 cut(s)	8, 425
BtsCI	GGATG	1 cut(s)	521
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	27, 406
CfoI	GCGC	3 cut(s)	406, 408, 526
Cfr13I	GGNCC	1 cut(s)	238
CviJI	RGCY	9 cut(s)	137, 229, 245, 276, 286, 313, 350, 482, 626
CviKI_1	RGCY	9 cut(s)	137, 229, 245, 276, 286, 313, 350, 482, 626
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	2 cut(s)	10, 427
DpnII	GATC	2 cut(s)	8, 425
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	414
FaiI	YATR	5 cut(s)	86, 174, 191, 436, 629
FaqI	GGGAC	1 cut(s)	224
Fnu4HI	GCNGC	1 cut(s)	522
FokI	GGATG	1 cut(s)	528
Fsp4HI	GCNGC	1 cut(s)	522
FspBI	CTAG	2 cut(s)	132, 637
GlaI	GCGC	3 cut(s)	405, 407, 525
GluI	GCNGC	1 cut(s)	522
GsaI	CCCAGC	1 cut(s)	245
HhaI	GCGC	3 cut(s)	406, 408, 526
Hin6I	GCGC	3 cut(s)	404, 406, 524
HinP1I	GCGC	3 cut(s)	404, 406, 524
HinfI	GANTC	4 cut(s)	55, 255, 375, 459
HphI	GGTGA	1 cut(s)	395
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	2 cut(s)	59, 132
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	7 cut(s)	22, 148, 165, 286, 321, 493, 560
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	25, 365, 599
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	45
HspAI	GCGC	3 cut(s)	404, 406, 524
Kzo9I	GATC	2 cut(s)	8, 425
LpnPI	CCDG	4 cut(s)	35, 243, 255, 593
Lsp1109I	GCAGC	1 cut(s)	508
LweI	GCATC	4 cut(s)	352, 353, 379, 552
MaeI	CTAG	2 cut(s)	132, 637
MaeII	ACGT	1 cut(s)	45
MalI	GATC	2 cut(s)	10, 427
MboI	GATC	2 cut(s)	8, 425
MboII	GAAGA	3 cut(s)	155, 347, 407
MflI	RGATCY	2 cut(s)	8, 425
MmeI	TCCRAC	3 cut(s)	453, 473, 551
MnlI	CCTC	5 cut(s)	152, 287, 456, 473, 518
MseI	TTAA	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	103
MvnI	CGCG	1 cut(s)	406
NdeII	GATC	2 cut(s)	8, 425
NlaIV	GGNNCC	3 cut(s)	19, 240, 427
PauI	GCGCGC	1 cut(s)	404
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	4 cut(s)	55, 255, 375, 459
PkrI	GCNGC	1 cut(s)	523
PshBI	ATTAAT	1 cut(s)	249
PspFI	CCCAGC	1 cut(s)	241
PspN4I	GGNNCC	3 cut(s)	19, 240, 427
PspPI	GGNCC	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	8, 425
PteI	GCGCGC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	522
Sau3AI	GATC	2 cut(s)	8, 425
Sau96I	GGNCC	1 cut(s)	238
SetI	ASST	7 cut(s)	48, 157, 288, 315, 352, 448, 571
SfaNI	GCATC	4 cut(s)	352, 353, 379, 552
SinI	GGWCC	1 cut(s)	238
SspMI	CTAG	2 cut(s)	132, 637
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	225
TaqII	GACCGA	1 cut(s)	226
TfiI	GAWTC	4 cut(s)	55, 255, 375, 459
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	1 cut(s)	521
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	238
VspI	ATTAAT	1 cut(s)	249
XbaI	TCTAGA	1 cut(s)	131
XspI	CTAG	2 cut(s)	132, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.