Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0020726

Physical Location & Seq

Genomic Coordinates Reverse (-)

34447481 .. 34447666

Gene Structure 186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0318800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGAAGCGGAGGGCCAACGAGTTCTGTTCACTTTGTCCAACCTTACAGATCGGGTTCGCATCTGGAGAGGTGCACCATGGGGTGCGCTGGTTTGGTATGATGAGGTGATGCCGGTTGAAAAGGTTCGATCATCTGATCATGACATCCTACTAGATCACTCTTCAGGGAATTCCTCCTATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

61

Amino Acids

7.04

Weight (kDa)

5.07

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020726)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000753.1_g000002 Rmu_sc0000753.1_g000023
rosa_rugosa	Rorug03G0318100.1 Rorug03G0318800
rosa_samantha	Rh4CG023800 Rh4CG024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	119
Alw21I	GWGCWC	1 cut(s)	76
Alw44I	GTGCAC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	13
ApaLI	GTGCAC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	76
BclI	TGATCA	1 cut(s)	136
BfaI	CTAG	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	13
BmsI	GCATC	2 cut(s)	69, 99
BpmI	CTGGAG	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	77
Bse118I	RCCGGY	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	144
BseSI	GKGCMC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	113
BsnI	GGCC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	4 cut(s)	49, 128, 136, 154
Bsp19I	CCATGG	1 cut(s)	77
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	15
BspHI	TCATGA	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	4 cut(s)	49, 128, 136, 154
BssT1I	CCWWGG	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	166
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	4 cut(s)	52, 131, 139, 157
BstMBI	GATC	4 cut(s)	49, 128, 136, 154
BstSLI	GKGCMC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	15
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	144
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	13
CviAII	CATG	2 cut(s)	78, 140
CviJI	RGCY	1 cut(s)	15
CviKI_1	RGCY	1 cut(s)	15
DpnI	GATC	4 cut(s)	51, 130, 138, 156
DpnII	GATC	4 cut(s)	49, 128, 136, 154
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	147
EcoRI	GAATTC	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	2 cut(s)	81, 143
FaiI	YATR	3 cut(s)	79, 99, 141
FatI	CATG	2 cut(s)	77, 139
FbaI	TGATCA	1 cut(s)	136
FokI	GGATG	1 cut(s)	131
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	2 cut(s)	81, 143
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	30, 74
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	64, 140
Hpy8I	GTNNAC	2 cut(s)	30, 74
HpyCH4V	TGCA	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	81, 143
HspAI	GCGC	1 cut(s)	86
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	49, 128, 136, 154
LpnPI	CCDG	4 cut(s)	49, 74, 126, 150
LweI	GCATC	2 cut(s)	69, 99
MaeI	CTAG	1 cut(s)	152
MalI	GATC	4 cut(s)	51, 130, 138, 156
MboI	GATC	4 cut(s)	49, 128, 136, 154
MboII	GAAGA	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	4 cut(s)	4, 62, 97, 184
MroXI	GAANNNNTTC	1 cut(s)	123
MspI	CCGG	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	77
NdeII	GATC	4 cut(s)	49, 128, 136, 154
NlaIII	CATG	2 cut(s)	81, 143
PagI	TCATGA	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	13
Sau3AI	GATC	4 cut(s)	49, 128, 136, 154
Sau96I	GGNCC	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	4 cut(s)	45, 73, 108, 126
SfaNI	GCATC	2 cut(s)	69, 99
SgeI	CNNG	9 cut(s)	32, 65, 76, 90, 101, 125, 152, 164, 177
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	77
TaqI	TCGA	1 cut(s)	127
TasI	AATT	1 cut(s)	169
VneI	GTGCAC	1 cut(s)	72
XapI	RAATTY	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.