Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000957.1

Orthogroup ID

OG0023058

Physical Location & Seq

Genomic Coordinates Forward (+)

16778 .. 17569

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000957.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgccccacctctcctaccccaaagtcatcgccgccatgacccgcgcagtctccgacatcgcccagacccactccgtcctcaacgccctcggcgaccgtcccgaccacaacctgctcccgcaaccacaccctcaactgcgatccaaactctccctcatcaccccctctgaaatcgccgccaaattctcccaccacgaccccaacttcgccaggatcaacaactgcatcttcgggtcctgccccgactccatcatccaacctcctagagtccaagtagcagcgtttgcagggggctcactagagccaaacgatgtcggagccggtgtcaaggaccatgtagaggtaattagggggagtgccgacgccgatgcggttgagggagaggtgagggaggtgaagcggagggcgtcgcggtggaggcagaggttgaagagctgggagatggtttggttggaggagagggcatcgaggtggtggagttggagggagatggaatatgggtcaggttcagaggtggcggagaaggattcgggttgggggagagtaggggcgaaggggatgggggagaggaggagggtctggtggtcaagggcgacagagaaggaaaggagaagagtgaaggtgatggaaaagaagagatgggttttctttttctcctccatttttttgggtggggagaagagagagagagagagggaaagagggtttagggaagaagaagtgggagagagagtaagcatgcttctgcaggaagaggctttgagtaggggtattttgggaatttctttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

263

Amino Acids

30.06

Weight (kDa)

9.6

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023058)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000957.1_g000004
rosa_rugosa	Rorug04G0079600
rosa_samantha	Rh2AG422900 Rh7DG431600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	120
AccII	CGCG	2 cut(s)	45, 412
AciI	CCGC	8 cut(s)	33, 43, 119, 177, 371, 400, 412, 518
AclWI	GGATC	2 cut(s)	135, 221
AcsI	RAATTY	2 cut(s)	182, 780
AcyI	GRCGYC	2 cut(s)	363, 407
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	1 cut(s)	430
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	1 cut(s)	435
AluI	AGCT	1 cut(s)	435
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	2 cut(s)	135, 221
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	2 cut(s)	182, 780
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	234, 331
AsuHPI	GGTGA	4 cut(s)	151, 397, 406, 634
AvaII	GGWCC	2 cut(s)	234, 331
BanII	GRGCYC	1 cut(s)	296
BarI	GAAGNNNNNNTAC	2 cut(s)	726, 758
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	6 cut(s)	257, 436, 484, 553, 619, 633
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BciT130I	CCWGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	2 cut(s)	264, 299
BfmI	CTRYAG	1 cut(s)	746
BfuAI	ACCTGC	1 cut(s)	120
BisI	GCNGC	3 cut(s)	33, 177, 279
BlsI	GCNGC	3 cut(s)	34, 178, 280
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	2 cut(s)	234, 331
BmgT120I	GGNCC	2 cut(s)	234, 331
BmiI	GGNNCC	2 cut(s)	235, 319
BmrFI	CCNGG	1 cut(s)	211
BmsI	GCATC	3 cut(s)	234, 358, 473
BsaHI	GRCGYC	2 cut(s)	363, 407
BsaJI	CCNNGG	1 cut(s)	88
BsaXI	ACNNNNNCTCC	4 cut(s)	309, 339, 717, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse118I	RCCGGY	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	2 cut(s)	252, 564
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseRI	GAGGAG	4 cut(s)	470, 583, 586, 646
BseXI	GCAGC	1 cut(s)	290
BseYI	CCCAGC	1 cut(s)	435
Bsh1236I	CGCG	2 cut(s)	45, 412
Bsh1285I	CGRYCG	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	2 cut(s)	140, 213
BspACI	CCGC	8 cut(s)	33, 43, 119, 177, 371, 400, 412, 518
BspFNI	CGCG	2 cut(s)	45, 412
BspLI	GGNNCC	2 cut(s)	235, 319
BspMAI	CTGCAG	1 cut(s)	750
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	135, 221
BspQI	GCTCTTC	1 cut(s)	425
BsrFI	RCCGGY	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	140, 213
BssNI	GRCGYC	2 cut(s)	363, 407
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	5 cut(s)	425, 607, 629, 674, 747
BstACI	GRCGYC	2 cut(s)	363, 407
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	740
BstF5I	GGATG	2 cut(s)	252, 564
BstFNI	CGCG	2 cut(s)	45, 412
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	143, 216
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	2 cut(s)	140, 213
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 418
BstNI	CCWGG	1 cut(s)	211
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	746
BstUI	CGCG	2 cut(s)	45, 412
BstV1I	GCAGC	1 cut(s)	290
BstXI	CCANNNNNNTGG	1 cut(s)	667
BtgZI	GCGATG	2 cut(s)	13, 43
BtsCI	GGATG	2 cut(s)	252, 564
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	740
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	2 cut(s)	234, 331
CseI	GACGC	2 cut(s)	371, 396
CviAII	CATG	3 cut(s)	37, 335, 739
CviJI	RGCY	5 cut(s)	294, 304, 320, 435, 758
CviKI_1	RGCY	5 cut(s)	294, 304, 320, 435, 758
DpnI	GATC	2 cut(s)	142, 215
DpnII	GATC	2 cut(s)	140, 213
Eam1104I	CTCTTC	5 cut(s)	425, 607, 629, 674, 747
EarI	CTCTTC	5 cut(s)	425, 607, 629, 674, 747
EciI	GGCGGA	1 cut(s)	533
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	234, 331
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	296
FaeI	CATG	3 cut(s)	40, 338, 742
FaiI	YATR	4 cut(s)	38, 336, 498, 740
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	3 cut(s)	36, 334, 738
FauI	CCCGC	2 cut(s)	50, 126
Fnu4HI	GCNGC	3 cut(s)	33, 177, 279
FokI	GGATG	2 cut(s)	239, 571
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	3 cut(s)	33, 177, 279
FspBI	CTAG	2 cut(s)	264, 299
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	3 cut(s)	33, 177, 279
GsaI	CCCAGC	1 cut(s)	439
HapII	CCGG	1 cut(s)	321
HgaI	GACGC	2 cut(s)	371, 396
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	2 cut(s)	363, 407
Hin1II	CATG	3 cut(s)	40, 338, 742
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	3 cut(s)	245, 267, 527
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	4 cut(s)	151, 397, 406, 634
Hpy188I	TCNGA	4 cut(s)	55, 169, 317, 511
Hpy188III	TCNNGA	1 cut(s)	101
Hpy99I	CGWCG	2 cut(s)	365, 412
HpyAV	CCTTC	4 cut(s)	517, 547, 595, 613
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	3 cut(s)	225, 287, 748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 418
Hsp92I	GRCGYC	2 cut(s)	363, 407
Hsp92II	CATG	3 cut(s)	40, 338, 742
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	140, 213
LguI	GCTCTTC	1 cut(s)	425
LmnI	GCTCC	2 cut(s)	120, 317
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	3 cut(s)	234, 358, 473
MaeI	CTAG	2 cut(s)	264, 299
MalI	GATC	2 cut(s)	142, 215
MboI	GATC	2 cut(s)	140, 213
MboII	GAAGA	8 cut(s)	220, 442, 624, 646, 691, 725, 728, 764
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	3 cut(s)	182, 345, 780
MlyI	GAGTC	2 cut(s)	239, 276
MmeI	TCCRAC	5 cut(s)	78, 280, 295, 432, 461
MslI	CAYNNNNRTG	1 cut(s)	469
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	2 cut(s)	45, 412
MwoI	GCNNNNNNNGC	2 cut(s)	284, 418
NdeII	GATC	2 cut(s)	140, 213
NlaIII	CATG	3 cut(s)	40, 338, 742
NlaIV	GGNNCC	2 cut(s)	235, 319
NmeAIII	GCCGAG	1 cut(s)	69
NspI	RCATGY	1 cut(s)	742
PaeI	GCATGC	1 cut(s)	742
PciSI	GCTCTTC	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	527
PkrI	GCNGC	3 cut(s)	34, 178, 280
PleI	GAGTC	2 cut(s)	239, 275
PpsI	GAGTC	2 cut(s)	239, 275
PpuMI	RGGWCCY	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	2 cut(s)	235, 319
PspPI	GGNCC	2 cut(s)	234, 331
PspPPI	RGGWCCY	1 cut(s)	234
PstI	CTGCAG	1 cut(s)	750
RseI	CAYNNNNRTG	1 cut(s)	469
SapI	GCTCTTC	1 cut(s)	425
SatI	GCNGC	3 cut(s)	33, 177, 279
Sau3AI	GATC	2 cut(s)	140, 213
Sau96I	GGNCC	2 cut(s)	234, 331
SchI	GAGTC	2 cut(s)	239, 276
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	296
SfaNI	GCATC	3 cut(s)	234, 358, 473
SfcI	CTRYAG	1 cut(s)	746
SinI	GGWCC	2 cut(s)	234, 331
SmiMI	CAYNNNNRTG	1 cut(s)	469
SphI	GCATGC	1 cut(s)	742
Sse9I	AATT	3 cut(s)	182, 345, 780
SsiI	CCGC	8 cut(s)	33, 43, 119, 177, 371, 400, 412, 518
SspMI	CTAG	2 cut(s)	264, 299
StyD4I	CCNGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	98
TaqI	TCGA	1 cut(s)	467
TasI	AATT	3 cut(s)	182, 345, 780
TauI	GCSGC	2 cut(s)	35, 179
TfiI	GAWTC	1 cut(s)	527
TseI	GCWGC	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	234, 331
XapI	RAATTY	2 cut(s)	182, 780
XceI	RCATGY	1 cut(s)	742
XspI	CTAG	2 cut(s)	264, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.