Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0023058

Physical Location & Seq

Genomic Coordinates Reverse (-)

61354640 .. 61355704

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG431600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTGGCCAGCCCCAGTTGATCATACCCCAGCAACCATCCTTATCCTCCTCAGCCAGATGCCCTACCTCTCAGACCCCAAAGTCATCGCCGCCATGACCAGCGCCGTCTCCGACGTCGGCCAGACCCACTCCGTCCTTAACGCCCTCGGCGACCGTCCCGACCACAACCTCCTCCCGCAACCACACCCTCAACGGCGATCCAAACTCTCCCTCATCACCCCCTCCGAAATCGCCACCGAATTCTCCCACCACGACCCCAACTTCGCTCGGATCAACAACTGCAGCTTCGGGTCCTGCCCCGACTCCATCATCCAGCCTCCTAGAGTCCAAGTAGCAGCGTTTGCAAGGGGTGCACTGGAGCCAAACGATTTCACAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

126

Amino Acids

13.7

Weight (kDa)

6.0

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023058)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000957.1_g000004
rosa_rugosa	Rorug04G0079600
rosa_samantha	Rh2AG422900 Rh7DG431600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AatII	GACGTC	1 cut(s)	117
AciI	CCGC	2 cut(s)	90, 176
AclWI	GGATC	2 cut(s)	192, 278
AcoI	YGGCCR	2 cut(s)	5, 118
AcsI	RAATTY	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	114
AluBI	AGCT	1 cut(s)	285
AluI	AGCT	1 cut(s)	285
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	1 cut(s)	112
Alw44I	GTGCAC	1 cut(s)	351
AlwI	GGATC	2 cut(s)	192, 278
AoxI	GGCC	2 cut(s)	5, 118
ApaLI	GTGCAC	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	282, 335
ApoI	RAATTY	1 cut(s)	239
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	291
BaeGI	GKGCMC	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	7
Bbv12I	GWGCWC	1 cut(s)	355
BbvCI	CCTCAGC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	294, 347
BccI	CCATC	2 cut(s)	44, 314
BceAI	ACGGC	2 cut(s)	89, 209
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	105
BisI	GCNGC	3 cut(s)	90, 283, 336
BlsI	GCNGC	3 cut(s)	91, 284, 337
Bme18I	GGWCC	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	2 cut(s)	292, 360
BmrI	ACTGGG	1 cut(s)	8
BmsI	GCATC	1 cut(s)	48
BmuI	ACTGGG	1 cut(s)	8
BpmI	CTGGAG	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	145
Bse1I	ACTGG	2 cut(s)	14, 360
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	2 cut(s)	36, 309
BseMII	CTCAG	2 cut(s)	64, 84
BseNI	ACTGG	2 cut(s)	14, 360
BseRI	GAGGAG	2 cut(s)	38, 161
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	2 cut(s)	294, 347
BseYI	CCCAGC	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	7, 120
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	355
BslFI	GGGAC	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	2 cut(s)	7, 120
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	3 cut(s)	19, 197, 270
BspACI	CCGC	2 cut(s)	90, 176
BspANI	GGCC	2 cut(s)	7, 120
BspCNI	CTCAG	2 cut(s)	63, 83
BspLI	GGNNCC	2 cut(s)	292, 360
BspMAI	CTGCAG	1 cut(s)	284
BspPI	GGATC	2 cut(s)	192, 278
BsrI	ACTGG	2 cut(s)	14, 360
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	3 cut(s)	19, 197, 270
BssNI	GRCGYC	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	114
BstAPI	GCANNNNNTGC	2 cut(s)	341, 350
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	50, 70
BstF5I	GGATG	2 cut(s)	36, 309
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	3 cut(s)	22, 200, 273
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	3 cut(s)	19, 197, 270
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 350
BstSFI	CTRYAG	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	355
BstV1I	GCAGC	2 cut(s)	294, 347
BsuRI	GGCC	2 cut(s)	7, 120
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	36, 309
BtsIMutI	CAGTG	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	291
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	7 cut(s)	7, 11, 54, 120, 285, 316, 361
CviKI_1	RGCY	7 cut(s)	7, 11, 54, 120, 285, 316, 361
DdeI	CTNAG	2 cut(s)	50, 70
DpnI	GATC	3 cut(s)	21, 199, 272
DpnII	GATC	3 cut(s)	19, 197, 270
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
EaeI	YGGCCR	2 cut(s)	5, 118
Eco47I	GGWCC	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	291
EcoRI	GAATTC	1 cut(s)	239
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	1 cut(s)	97
FaiI	YATR	2 cut(s)	24, 95
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	1 cut(s)	93
FauI	CCCGC	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	3 cut(s)	90, 283, 336
FokI	GGATG	2 cut(s)	23, 296
Fsp4HI	GCNGC	3 cut(s)	90, 283, 336
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	3 cut(s)	90, 283, 336
GsaI	CCCAGC	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	377
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	7, 120
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	2 cut(s)	302, 324
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	4 cut(s)	73, 112, 226, 270
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	353
Hpy99I	CGWCG	2 cut(s)	116, 119
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	282, 344, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 350
HpyF3I	CTNAG	2 cut(s)	50, 70
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	97
HspAI	GCGC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	19, 197, 270
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	9 cut(s)	21, 27, 42, 68, 112, 134, 307, 326, 341
Lsp1109I	GCAGC	2 cut(s)	294, 347
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	114
MalI	GATC	3 cut(s)	21, 199, 272
MboI	GATC	3 cut(s)	19, 197, 270
MhlI	GDGCHC	1 cut(s)	355
MlsI	TGGCCA	1 cut(s)	7
MluCI	AATT	1 cut(s)	239
MluNI	TGGCCA	1 cut(s)	7
MlyI	GAGTC	2 cut(s)	296, 333
MmeI	TCCRAC	1 cut(s)	135
Mox20I	TGGCCA	1 cut(s)	7
MscI	TGGCCA	1 cut(s)	7
MseI	TTAA	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	341, 350
NdeII	GATC	3 cut(s)	19, 197, 270
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	2 cut(s)	292, 360
NmeAIII	GCCGAG	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PkrI	GCNGC	3 cut(s)	91, 284, 337
PleI	GAGTC	2 cut(s)	296, 332
PpsI	GAGTC	2 cut(s)	296, 332
PpuMI	RGGWCCY	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	28
PspN4I	GGNNCC	2 cut(s)	292, 360
PspPI	GGNCC	1 cut(s)	291
PspPPI	RGGWCCY	1 cut(s)	291
PstI	CTGCAG	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	3 cut(s)	90, 283, 336
Sau3AI	GATC	3 cut(s)	19, 197, 270
Sau96I	GGNCC	1 cut(s)	291
SchI	GAGTC	2 cut(s)	296, 333
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	4 cut(s)	69, 117, 171, 287
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	1 cut(s)	291
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	2 cut(s)	90, 176
SspMI	CTAG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	117
TasI	AATT	1 cut(s)	239
TauI	GCSGC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	360
TseI	GCWGC	2 cut(s)	282, 335
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	1 cut(s)	360
VneI	GTGCAC	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	291
XapI	RAATTY	1 cut(s)	239
XspI	CTAG	1 cut(s)	321
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.