Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0023058

Physical Location & Seq

Genomic Coordinates Forward (+)

12182733 .. 12184859

Gene Structure 2127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0079600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCGGTTTTTATGGTGGGAAAATTACTTGAAGCCCGAGACTACAAACGCAGATCCTTTCAGGGGATGTTTCGCAGTGCGTGGTGTGTTAACGGGCAGTTTCGAATGGAGGAAGCGGACAGAGATTGATTTGTTTTCATTTTCAGACCCGGCGGACAGAGCTAGGATTTGGCGTGGGGGTTCATGGGGTTTGGTTGCTATGGCACCTGCTGGGACTGGACAAATCAAGAAAAAGAGGGGGAGGCCAGTAGGTAGTCAAAATAAGTTGCCTTACGGAACGGCGGTTGAAAATAGCAATTCAAAGAAAGAGCTTGTGCATAAAAAGGTGGCGAAGGCCAAGAAAAATATATTGCCTCAATTTGCAGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

123

Amino Acids

13.83

Weight (kDa)

10.41

Isoelectric Point (pI)

30.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023058)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000957.1_g000004
rosa_rugosa	Rorug04G0079600
rosa_samantha	Rh2AG422900 Rh7DG431600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	202
AciI	CCGC	4 cut(s)	4, 115, 152, 281
AclWI	GGATC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	3 cut(s)	31, 287, 300
AluBI	AGCT	3 cut(s)	161, 310, 368
AluI	AGCT	3 cut(s)	161, 310, 368
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	47
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	2 cut(s)	242, 333
AsuC2I	CCSGG	1 cut(s)	149
AsuII	TTCGAA	1 cut(s)	102
AvaI	CYCGRG	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	294
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	162
BfuAI	ACCTGC	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	149
Bpu14I	TTCGAA	1 cut(s)	102
BpuMI	CCSGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	220, 245
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseNI	ACTGG	2 cut(s)	220, 245
BseYI	CCCAGC	1 cut(s)	209
BshFI	GGCC	2 cut(s)	244, 335
BshNI	GGYRCC	1 cut(s)	202
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	244, 335
BsoBI	CYCGRG	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	4 cut(s)	4, 115, 152, 281
BspANI	GGCC	2 cut(s)	244, 335
BspLI	GGNNCC	1 cut(s)	204
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	47
BspT104I	TTCGAA	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	202
BsrI	ACTGG	2 cut(s)	220, 245
BssMI	GATC	1 cut(s)	52
BstBI	TTCGAA	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	244, 335
BtsCI	GGATG	1 cut(s)	71
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	214
CviAII	CATG	1 cut(s)	183
CviJI	RGCY	6 cut(s)	34, 161, 244, 310, 335, 368
CviKI_1	RGCY	6 cut(s)	34, 161, 244, 310, 335, 368
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
EciI	GGCGGA	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	35
FaeI	CATG	1 cut(s)	186
FaiI	YATR	5 cut(s)	13, 184, 200, 318, 347
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	1 cut(s)	182
FokI	GGATG	1 cut(s)	78
FspBI	CTAG	1 cut(s)	162
GsaI	CCCAGC	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	244, 335
HapII	CCGG	1 cut(s)	149
Hin1II	CATG	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HpaI	GTTAAC	1 cut(s)	90
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	316, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	186
KspAI	GTTAAC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	365
LpnPI	CCDG	7 cut(s)	46, 162, 195, 201, 219, 258, 348
MaeI	CTAG	1 cut(s)	162
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	3 cut(s)	22, 295, 356
MnlI	CCTC	4 cut(s)	102, 228, 234, 363
MseI	TTAA	2 cut(s)	89, 370
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	158
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	186
NlaIV	GGNNCC	1 cut(s)	204
NspV	TTCGAA	1 cut(s)	102
PaqCI	CACCTGC	1 cut(s)	214
PspFI	CCCAGC	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	89, 370
Sau3AI	GATC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	6 cut(s)	163, 208, 253, 312, 327, 370
SfuI	TTCGAA	1 cut(s)	102
Sse9I	AATT	3 cut(s)	22, 295, 356
SsiI	CCGC	4 cut(s)	4, 115, 152, 281
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	147
TaqI	TCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	22, 295, 356
Tru1I	TTAA	2 cut(s)	89, 370
Tru9I	TTAA	2 cut(s)	89, 370
TscAI	CASTG	1 cut(s)	81
TspDTI	ATGAA	2 cut(s)	126, 171
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	81
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.