Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0023058

Physical Location & Seq

Genomic Coordinates Reverse (-)

62772774 .. 62773103

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG422900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTGGCCAGCCCCAATTTATCATACCCCAGCAACCATCCTCATCCTCCTAAGCCAGATGCCCCACCTCTCCGACCCCAAAGTCATCGCCGCCATGACCCGCGTCGTCTCCGATGTCGCCCAGACCCACTTCATCCTCAACGCCCTCGGCGACCGTCCTGACCACAACCTCCTCCCGCAACCACACCCTCAACGGCGATCCAAACTCTCCCTCATCACCCCCTCCGAAATCGCCGCCGAATTCTCCCACCATGACCCCAACTTCGCCCGGATCAACAACTGCAGCTTCGGGTCTTGCCCCGACTCCATCATCCAGCCTCCTAGAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

109

Amino Acids

12.12

Weight (kDa)

7.05

Isoelectric Point (pI)

54.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023058)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000957.1_g000004
rosa_rugosa	Rorug04G0079600
rosa_samantha	Rh2AG422900 Rh7DG431600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccII	CGCG	1 cut(s)	102
AciI	CCGC	4 cut(s)	90, 100, 176, 234
AclWI	GGATC	2 cut(s)	192, 278
AcoI	YGGCCR	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	239
AluBI	AGCT	1 cut(s)	285
AluI	AGCT	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	192, 278
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	239
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	7
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	2 cut(s)	44, 314
BceAI	ACGGC	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	280
BisI	GCNGC	3 cut(s)	90, 234, 283
BlsI	GCNGC	3 cut(s)	91, 235, 284
Bme1390I	CCNGG	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	268
BmsI	GCATC	1 cut(s)	48
BoxI	GACNNNNGTC	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	4 cut(s)	36, 42, 132, 309
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	294
BseYI	CCCAGC	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	7
BsiEI	CGRYCG	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	7
Bsp143I	GATC	2 cut(s)	197, 270
BspACI	CCGC	4 cut(s)	90, 100, 176, 234
BspANI	GGCC	1 cut(s)	7
BspFNI	CGCG	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	284
BspPI	GGATC	2 cut(s)	192, 278
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	2 cut(s)	197, 270
Bst4CI	ACNGT	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	4 cut(s)	36, 42, 132, 309
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	2 cut(s)	200, 273
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	2 cut(s)	197, 270
BstMCI	CGRYCG	1 cut(s)	154
BstPAI	GACNNNNGTC	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	7
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	4 cut(s)	36, 42, 132, 309
Cac8I	GCNNGC	1 cut(s)	9
CseI	GACGC	1 cut(s)	91
CviAII	CATG	2 cut(s)	94, 251
CviJI	RGCY	5 cut(s)	7, 11, 54, 285, 316
CviKI_1	RGCY	5 cut(s)	7, 11, 54, 285, 316
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	2 cut(s)	199, 272
DpnII	GATC	2 cut(s)	197, 270
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
EaeI	YGGCCR	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	239
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	2 cut(s)	97, 254
FaiI	YATR	3 cut(s)	24, 95, 252
FatI	CATG	2 cut(s)	93, 250
FauI	CCCGC	2 cut(s)	107, 183
Fnu4HI	GCNGC	3 cut(s)	90, 234, 283
FokI	GGATG	4 cut(s)	23, 29, 119, 296
Fsp4HI	GCNGC	3 cut(s)	90, 234, 283
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	3 cut(s)	90, 234, 283
GsaI	CCCAGC	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	7
HapII	CCGG	1 cut(s)	268
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	97, 254
HinfI	GANTC	2 cut(s)	302, 324
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	73, 112, 226
Hpy188III	TCNNGA	1 cut(s)	158
Hpy99I	CGWCG	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	1 cut(s)	282
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	2 cut(s)	97, 254
Kzo9I	GATC	2 cut(s)	197, 270
LpnPI	CCDG	7 cut(s)	21, 42, 68, 134, 171, 281, 326
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	1 cut(s)	321
MalI	GATC	2 cut(s)	199, 272
MboI	GATC	2 cut(s)	197, 270
MlsI	TGGCCA	1 cut(s)	7
MluCI	AATT	2 cut(s)	15, 239
MluNI	TGGCCA	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	96
Mox20I	TGGCCA	1 cut(s)	7
MscI	TGGCCA	1 cut(s)	7
Msp20I	TGGCCA	1 cut(s)	7
MspI	CCGG	1 cut(s)	268
MspR9I	CCNGG	1 cut(s)	268
MvnI	CGCG	1 cut(s)	102
NciI	CCSGG	1 cut(s)	268
NdeII	GATC	2 cut(s)	197, 270
NlaIII	CATG	2 cut(s)	97, 254
NmeAIII	GCCGAG	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PkrI	GCNGC	3 cut(s)	91, 235, 284
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PshAI	GACNNNNGTC	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	284
SatI	GCNGC	3 cut(s)	90, 234, 283
Sau3AI	GATC	2 cut(s)	197, 270
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	268
SetI	ASST	3 cut(s)	69, 171, 287
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	280
Sse9I	AATT	2 cut(s)	15, 239
SsiI	CCGC	4 cut(s)	90, 100, 176, 234
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	155
TasI	AATT	2 cut(s)	15, 239
TauI	GCSGC	2 cut(s)	92, 236
TseI	GCWGC	1 cut(s)	282
TspDTI	ATGAA	1 cut(s)	121
XapI	RAATTY	1 cut(s)	239
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.