Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001154.1

Orthogroup ID

OG0020692

Physical Location & Seq

Genomic Coordinates Reverse (-)

83991 .. 84635

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001154.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ctggagtcgtgggtgttcgcctgccacgagctcctcaagcgcgtgaaccgccgcgtcgagtccagcgaattcgaaaaggccgccaccgactgttacctgatcgagcgcgtctggaagcttctggcggaaatcgaggacctccacctgttaatggacccggaggactttcttcggctcaagaaccagttgaagatcaagacggtggacgatacggagtcgttttgcttcaggtcgaagggactggtggagatcacaaggctgtgtaaggacttgaagcacaaggttccgaacgtgctgggagtggaggtggacccgatgggcgggccgaggatccaggaggcggcgatgaggctctactcggagaaaaccgggtcggagaagatccatctccttcaggcgatgcagactatagaatcggcggtgaaacgtttcttcttcgcgtacaagcaggtgctagtggtgttgatggggagcttggaggcgaaagggaaccgggtcgtggtgagcccggagtccggcgacgcgctgagtcagatattcctggagccgacgtattttccgagcttggacgccgcgaagacgtttctgggggacggtttgagtcacgaaaacgtttcggagagacggacgcgcaggactaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hs1pro-1_C Hs1pro-1_N

Protein Analysis

214

Amino Acids

24.52

Weight (kDa)

7.13

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020692)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027114
rosa_multiflora	Rmu_sc0001154.1_g000011 Rmu_sc0001154.1_g000020
rosa_samantha	Rh1BG323400 Rh1CG336700 Rh1DG354200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	439
Acc36I	ACCTGC	1 cut(s)	439
AccII	CGCG	7 cut(s)	42, 54, 108, 440, 524, 575, 631
AciI	CCGC	8 cut(s)	49, 52, 81, 125, 321, 341, 419, 573
AclI	AACGTT	2 cut(s)	427, 612
AclWI	GGATC	3 cut(s)	325, 338, 376
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	2 cut(s)	211, 377
AcyI	GRCGYC	1 cut(s)	570
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	5 cut(s)	151, 320, 340, 499, 515
AgsI	TTSAA	2 cut(s)	190, 274
AjnI	CCWGG	2 cut(s)	333, 540
AluBI	AGCT	4 cut(s)	31, 118, 474, 564
AluI	AGCT	4 cut(s)	31, 118, 474, 564
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	616
AlwI	GGATC	3 cut(s)	325, 338, 376
AoxI	GGCC	2 cut(s)	78, 323
ApoI	RAATTY	1 cut(s)	68
Asp700I	GAANNNNTTC	1 cut(s)	428
AspLEI	GCGC	4 cut(s)	42, 108, 526, 633
AspS9I	GGNCC	4 cut(s)	136, 154, 310, 323
AsuC2I	CCSGG	4 cut(s)	158, 370, 494, 509
AsuHPI	GGTGA	2 cut(s)	433, 514
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	3 cut(s)	136, 154, 310
BamHI	GGATCC	1 cut(s)	330
BanII	GRGCYC	2 cut(s)	33, 509
BauI	CACGAG	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	584
Bbv12I	GWGCWC	1 cut(s)	33
BccI	CCATC	3 cut(s)	310, 393, 460
BciT130I	CCWGG	2 cut(s)	335, 542
BcnI	CCSGG	4 cut(s)	158, 370, 494, 509
BcoDI	GTCTC	1 cut(s)	616
BfaI	CTAG	2 cut(s)	455, 639
BfmI	CTRYAG	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	439
BisI	GCNGC	4 cut(s)	52, 81, 342, 573
BlsI	GCNGC	4 cut(s)	53, 82, 343, 574
Bme1390I	CCNGG	6 cut(s)	158, 335, 370, 494, 509, 542
Bme18I	GGWCC	3 cut(s)	136, 154, 310
BmgT120I	GGNCC	4 cut(s)	136, 154, 310, 323
BmiI	GGNNCC	6 cut(s)	156, 285, 312, 332, 491, 546
BmrFI	CCNGG	6 cut(s)	158, 335, 370, 494, 509, 542
BmsI	GCATC	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	584
BpmI	CTGGAG	2 cut(s)	23, 563
Bpu14I	TTCGAA	1 cut(s)	72
BpuEI	CTTGAG	2 cut(s)	20, 161
BpuMI	CCSGG	4 cut(s)	158, 370, 494, 509
BsaHI	GRCGYC	1 cut(s)	570
BsaJI	CCNNGG	1 cut(s)	326
BsaXI	ACNNNNNCTCC	4 cut(s)	291, 321, 536, 566
Bsc4I	CCNNNNNNNGG	5 cut(s)	151, 320, 340, 499, 515
Bse1I	ACTGG	2 cut(s)	184, 246
BseBI	CCWGG	2 cut(s)	335, 542
BseDI	CCNNGG	1 cut(s)	326
BseLI	CCNNNNNNNGG	5 cut(s)	151, 320, 340, 499, 515
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	2 cut(s)	184, 246
BseRI	GAGGAG	1 cut(s)	23
BseYI	CCCAGC	1 cut(s)	295
Bsh1236I	CGCG	7 cut(s)	42, 54, 108, 440, 524, 575, 631
BshFI	GGCC	2 cut(s)	80, 325
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	5 cut(s)	158, 369, 493, 509, 516
BslFI	GGGAC	2 cut(s)	252, 605
BslI	CCNNNNNNNGG	5 cut(s)	151, 320, 340, 499, 515
BsmAI	GTCTC	1 cut(s)	616
BsmBI	CGTCTC	1 cut(s)	616
BsmFI	GGGAC	2 cut(s)	252, 605
BsnI	GGCC	2 cut(s)	80, 325
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	33, 509
Bsp143I	GATC	5 cut(s)	99, 192, 249, 330, 381
BspACI	CCGC	8 cut(s)	49, 52, 81, 125, 321, 341, 419, 573
BspANI	GGCC	2 cut(s)	80, 325
BspCNI	CTCAG	1 cut(s)	519
BspFNI	CGCG	7 cut(s)	42, 54, 108, 440, 524, 575, 631
BspLI	GGNNCC	6 cut(s)	156, 285, 312, 332, 491, 546
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	3 cut(s)	325, 338, 376
BspT104I	TTCGAA	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	184, 246
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	5 cut(s)	99, 192, 249, 330, 381
BssNI	GRCGYC	1 cut(s)	570
BssSI	CACGAG	1 cut(s)	26
Bst2BI	CACGAG	1 cut(s)	26
Bst2UI	CCWGG	2 cut(s)	335, 542
Bst4CI	ACNGT	3 cut(s)	92, 202, 596
BstACI	GRCGYC	1 cut(s)	570
BstBI	TTCGAA	1 cut(s)	72
BstC8I	GCNNGC	2 cut(s)	22, 323
BstDEI	CTNAG	1 cut(s)	527
BstFNI	CGCG	7 cut(s)	42, 54, 108, 440, 524, 575, 631
BstHHI	GCGC	4 cut(s)	42, 108, 526, 633
BstKTI	GATC	5 cut(s)	102, 195, 252, 333, 384
BstMAI	GTCTC	1 cut(s)	616
BstMBI	GATC	5 cut(s)	99, 192, 249, 330, 381
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 48
BstNI	CCWGG	2 cut(s)	335, 542
BstSCI	CCNGG	6 cut(s)	156, 333, 368, 492, 507, 540
BstSFI	CTRYAG	1 cut(s)	408
BstUI	CGCG	7 cut(s)	42, 54, 108, 440, 524, 575, 631
BstV2I	GAAGAC	1 cut(s)	584
BstX2I	RGATCY	2 cut(s)	330, 381
BstYI	RGATCY	2 cut(s)	330, 381
BsuRI	GGCC	2 cut(s)	80, 325
BtgZI	GCGATG	2 cut(s)	359, 413
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	2 cut(s)	22, 323
CfoI	GCGC	4 cut(s)	42, 108, 526, 633
Cfr13I	GGNCC	4 cut(s)	136, 154, 310, 323
CseI	GACGC	5 cut(s)	43, 97, 530, 578, 637
Csp6I	GTAC	1 cut(s)	442
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	1 cut(s)	527
DpnI	GATC	5 cut(s)	101, 194, 251, 332, 383
DpnII	GATC	5 cut(s)	99, 192, 249, 330, 381
EciI	GGCGGA	1 cut(s)	140
Ecl136II	GAGCTC	1 cut(s)	31
Eco24I	GRGCYC	2 cut(s)	33, 509
Eco47I	GGWCC	3 cut(s)	136, 154, 310
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	2 cut(s)	211, 377
EcoICRI	GAGCTC	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	68
EcoRII	CCWGG	2 cut(s)	333, 540
EcoT38I	GRGCYC	2 cut(s)	33, 509
Esp3I	CGTCTC	1 cut(s)	616
FaiI	YATR	1 cut(s)	410
FaqI	GGGAC	2 cut(s)	252, 605
FauI	CCCGC	1 cut(s)	314
Fnu4HI	GCNGC	4 cut(s)	52, 81, 342, 573
FriOI	GRGCYC	2 cut(s)	33, 509
Fsp4HI	GCNGC	4 cut(s)	52, 81, 342, 573
FspBI	CTAG	2 cut(s)	455, 639
GlaI	GCGC	4 cut(s)	41, 107, 525, 632
GluI	GCNGC	4 cut(s)	52, 81, 342, 573
GsaI	CCCAGC	1 cut(s)	299
GsuI	CTGGAG	2 cut(s)	23, 563
HaeIII	GGCC	2 cut(s)	80, 325
HapII	CCGG	5 cut(s)	158, 369, 493, 509, 516
HgaI	GACGC	5 cut(s)	43, 97, 530, 578, 637
HhaI	GCGC	4 cut(s)	42, 108, 526, 633
Hin1I	GRCGYC	1 cut(s)	570
Hin6I	GCGC	4 cut(s)	40, 106, 524, 631
HinP1I	GCGC	4 cut(s)	40, 106, 524, 631
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	7 cut(s)	5, 59, 215, 413, 512, 529, 601
HpaII	CCGG	5 cut(s)	158, 369, 493, 509, 516
HphI	GGTGA	2 cut(s)	433, 514
Hpy166II	GTNNAC	3 cut(s)	46, 205, 310
Hpy188I	TCNGA	6 cut(s)	288, 361, 376, 534, 561, 619
Hpy188III	TCNNGA	4 cut(s)	112, 178, 196, 605
Hpy8I	GTNNAC	3 cut(s)	46, 205, 310
Hpy99I	CGWCG	3 cut(s)	59, 524, 553
HpyAV	CCTTC	2 cut(s)	229, 401
HpyCH4III	ACNGT	3 cut(s)	92, 202, 596
HpyCH4IV	ACGT	5 cut(s)	291, 427, 551, 581, 612
HpyCH4V	TGCA	1 cut(s)	403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 48
HpyF3I	CTNAG	1 cut(s)	527
HpySE526I	ACGT	5 cut(s)	291, 427, 551, 581, 612
Hsp92I	GRCGYC	1 cut(s)	570
HspAI	GCGC	4 cut(s)	40, 106, 524, 631
Kzo9I	GATC	5 cut(s)	99, 192, 249, 330, 381
LmnI	GCTCC	3 cut(s)	36, 471, 544
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	2 cut(s)	455, 639
MaeII	ACGT	5 cut(s)	291, 427, 551, 581, 612
MaeIII	GTNAC	2 cut(s)	92, 602
MalI	GATC	5 cut(s)	101, 194, 251, 332, 383
MboI	GATC	5 cut(s)	99, 192, 249, 330, 381
MboII	GAAGA	6 cut(s)	161, 202, 391, 424, 427, 589
MflI	RGATCY	2 cut(s)	330, 381
MhlI	GDGCHC	2 cut(s)	33, 509
MluCI	AATT	1 cut(s)	68
MlyI	GAGTC	6 cut(s)	14, 68, 224, 521, 538, 610
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	9 cut(s)	44, 127, 149, 154, 298, 321, 331, 342, 472
MroXI	GAANNNNTTC	1 cut(s)	428
MseI	TTAA	1 cut(s)	149
MspI	CCGG	5 cut(s)	158, 369, 493, 509, 516
MspR9I	CCNGG	6 cut(s)	158, 335, 370, 494, 509, 542
MvaI	CCWGG	2 cut(s)	335, 542
MvnI	CGCG	7 cut(s)	42, 54, 108, 440, 524, 575, 631
MwoI	GCNNNNNNNGC	2 cut(s)	37, 48
NciI	CCSGG	4 cut(s)	158, 370, 494, 509
NdeII	GATC	5 cut(s)	99, 192, 249, 330, 381
NlaIV	GGNNCC	6 cut(s)	156, 285, 312, 332, 491, 546
NmeAIII	GCCGAG	1 cut(s)	351
NmuCI	GTSAC	1 cut(s)	602
NspV	TTCGAA	1 cut(s)	72
PaqCI	CACCTGC	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	3 cut(s)	24, 63, 557
PdmI	GAANNNNTTC	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	413
PfoI	TCCNGGA	2 cut(s)	333, 540
PkrI	GCNGC	4 cut(s)	53, 82, 343, 574
PleI	GAGTC	6 cut(s)	13, 67, 223, 520, 537, 609
PpsI	GAGTC	6 cut(s)	13, 67, 223, 520, 537, 609
PpuMI	RGGWCCY	1 cut(s)	136
Psp124BI	GAGCTC	1 cut(s)	33
Psp1406I	AACGTT	2 cut(s)	427, 612
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	333, 540
PspFI	CCCAGC	1 cut(s)	295
PspGI	CCWGG	2 cut(s)	333, 540
PspN4I	GGNNCC	6 cut(s)	156, 285, 312, 332, 491, 546
PspPI	GGNCC	4 cut(s)	136, 154, 310, 323
PspPPI	RGGWCCY	1 cut(s)	136
PsuI	RGATCY	2 cut(s)	330, 381
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	4 cut(s)	52, 81, 342, 573
Sau3AI	GATC	5 cut(s)	99, 192, 249, 330, 381
Sau96I	GGNCC	4 cut(s)	136, 154, 310, 323
SchI	GAGTC	6 cut(s)	14, 68, 224, 521, 538, 610
ScrFI	CCNGG	6 cut(s)	158, 335, 370, 494, 509, 542
SduI	GDGCHC	2 cut(s)	33, 509
SfaNI	GCATC	1 cut(s)	390
SfcI	CTRYAG	1 cut(s)	408
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	3 cut(s)	136, 154, 310
SmlI	CTYRAG	2 cut(s)	35, 176
SmoI	CTYRAG	2 cut(s)	35, 176
Sse9I	AATT	1 cut(s)	68
SsiI	CCGC	8 cut(s)	49, 52, 81, 125, 321, 341, 419, 573
SspMI	CTAG	2 cut(s)	455, 639
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	6 cut(s)	156, 333, 368, 492, 507, 540
TaaI	ACNGT	3 cut(s)	92, 202, 596
TaiI	ACGT	5 cut(s)	294, 430, 554, 584, 615
TaqI	TCGA	5 cut(s)	57, 72, 102, 132, 233
TasI	AATT	1 cut(s)	68
TauI	GCSGC	4 cut(s)	54, 83, 344, 575
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	602
Tsp45I	GTSAC	1 cut(s)	602
TspGWI	ACGGA	2 cut(s)	227, 640
VpaK11BI	GGWCC	3 cut(s)	136, 154, 310
XapI	RAATTY	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	2 cut(s)	455, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.