Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001154.1

Orthogroup ID

OG0020692

Physical Location & Seq

Genomic Coordinates Reverse (-)

126032 .. 127289

Gene Structure 1258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001154.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atggacccggaggactttctccggctcaagaaccagttgaagatcgaaatggtcgacgatacggagtcgttttgcttcagatcgaagggactagtggagatcactaggctctgcaaggacttgaagcacaaggtaccgaacgtgctaggagtggaggtggatcccatgggcaggccgaggatccaggaggcggcgatgaggctctactcgaaaaaaaccggttcagagaagatccatctccttcaggcgatgcagactatcgagtcggcggtgaaacgtttcttctttgcatacaagcaggtgctggtggtgttgatagggagcttggaggcgaaacggaaccgggtcgtggtgggcccagaatccagtgacgcgctgagccagatattcttggagctgacgtattttcctagcttggacaaggcgaaggcgtttatgggggacgagccctcaactgggcctgtttccaacaagtccgacgggttacagcggtgggtattagtgtattactgccttccttcttctcatcctcacggtacccagtttccatcgcaaccaagctaccgtccacctcctcctcaatttccattccaaccgagttactcaccaccactactgccttcccacacgatcatcaatgggtatgttttccctcatcaatttccatcaacccatacttaccattcacctgatactgacccaaatccctggatctatccttctatttcacaaatccattcctatgacccatcggttcccagtgttaatttacacttcgtctccaccaaaaccatgcctccaccacctatttaccattctgctccttcacctcccatttgcgagcaaccacatacaatttcatatccagataattgggaggtcccaattgttgactctggtagctgctctcttgtcacgccccgaattttgaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hs1pro-1_C Hs1pro-1_N

Protein Analysis

311

Amino Acids

35.05

Weight (kDa)

6.86

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020692)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027114
rosa_multiflora	Rmu_sc0001154.1_g000011 Rmu_sc0001154.1_g000020
rosa_samantha	Rh1BG323400 Rh1CG336700 Rh1DG354200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	289
AasI	GACNNNNNNGTC	1 cut(s)	262
Acc36I	ACCTGC	1 cut(s)	289
Acc65I	GGTACC	2 cut(s)	133, 536
AccB1I	GGYRCC	2 cut(s)	133, 536
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	374
AciI	CCGC	3 cut(s)	191, 269, 490
AclI	AACGTT	1 cut(s)	277
AclWI	GGATC	6 cut(s)	155, 168, 175, 188, 226, 719
AcsI	RAATTY	1 cut(s)	924
AcuI	CTGAAG	2 cut(s)	61, 227
AfaI	GTAC	2 cut(s)	135, 538
AfiI	CCNNNNNNNGG	5 cut(s)	171, 190, 349, 455, 456
AgeI	ACCGGT	1 cut(s)	218
AgsI	TTSAA	3 cut(s)	40, 124, 931
AhlI	ACTAGT	1 cut(s)	91
AjnI	CCWGG	2 cut(s)	183, 707
AluBI	AGCT	5 cut(s)	324, 397, 414, 561, 903
AluI	AGCT	5 cut(s)	324, 397, 414, 561, 903
Alw26I	GTCTC	1 cut(s)	784
AlwI	GGATC	6 cut(s)	155, 168, 175, 188, 226, 719
AlwNI	CAGNNNCTG	1 cut(s)	304
AoxI	GGCC	3 cut(s)	173, 355, 458
ApaI	GGGCCC	1 cut(s)	359
ApeKI	GCWGC	1 cut(s)	903
ApoI	RAATTY	1 cut(s)	924
AsiGI	ACCGGT	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	278
Asp718I	GGTACC	2 cut(s)	133, 536
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	5 cut(s)	4, 355, 356, 458, 880
AsuC2I	CCSGG	2 cut(s)	8, 344
AsuHPI	GGTGA	4 cut(s)	283, 597, 678, 819
AvaII	GGWCC	2 cut(s)	4, 880
BaeGI	GKGCMC	1 cut(s)	359
BamHI	GGATCC	2 cut(s)	160, 180
BanI	GGYRCC	2 cut(s)	133, 536
BanII	GRGCYC	2 cut(s)	359, 450
BbvI	GCAGC	1 cut(s)	890
BccI	CCATC	4 cut(s)	243, 556, 673, 757
BciT130I	CCWGG	2 cut(s)	185, 709
BcnI	CCSGG	2 cut(s)	8, 344
BcoDI	GTCTC	1 cut(s)	784
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	4 cut(s)	92, 105, 146, 411
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	2 cut(s)	192, 904
BlpI	GCTNAGC	1 cut(s)	377
BlsI	GCNGC	2 cut(s)	193, 905
Bme1390I	CCNGG	4 cut(s)	8, 185, 344, 709
Bme18I	GGWCC	2 cut(s)	4, 880
BmgT120I	GGNCC	5 cut(s)	4, 355, 356, 458, 880
BmiI	GGNNCC	9 cut(s)	6, 135, 162, 182, 341, 357, 538, 756, 882
BmrFI	CCNGG	4 cut(s)	8, 185, 344, 709
BmrI	ACTGGG	3 cut(s)	465, 535, 753
BmsI	GCATC	1 cut(s)	240
BmuI	ACTGGG	3 cut(s)	465, 535, 753
Bpu1102I	GCTNAGC	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	11
BpuMI	CCSGG	2 cut(s)	8, 344
BsaJI	CCNNGG	3 cut(s)	165, 176, 707
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	8 cut(s)	141, 171, 386, 416, 764, 781, 794, 811
Bsc4I	CCNNNNNNNGG	5 cut(s)	171, 190, 349, 455, 456
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	5 cut(s)	34, 366, 460, 541, 759
BseBI	CCWGG	2 cut(s)	185, 709
BseDI	CCNNGG	3 cut(s)	165, 176, 707
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	5 cut(s)	171, 190, 349, 455, 456
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	5 cut(s)	34, 366, 460, 541, 759
BseRI	GAGGAG	2 cut(s)	564, 567
BseSI	GKGCMC	1 cut(s)	359
BseXI	GCAGC	1 cut(s)	890
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	3 cut(s)	175, 357, 460
BshNI	GGYRCC	2 cut(s)	133, 536
BshTI	ACCGGT	1 cut(s)	218
BsiSI	CCGG	4 cut(s)	8, 22, 219, 343
BslFI	GGGAC	3 cut(s)	102, 455, 866
BslI	CCNNNNNNNGG	5 cut(s)	171, 190, 349, 455, 456
BsmAI	GTCTC	1 cut(s)	784
BsmBI	CGTCTC	1 cut(s)	784
BsmFI	GGGAC	3 cut(s)	102, 455, 866
BsnI	GGCC	3 cut(s)	175, 357, 460
Bsp120I	GGGCCC	1 cut(s)	355
Bsp1286I	GDGCHC	2 cut(s)	359, 450
Bsp143I	GATC	8 cut(s)	42, 80, 99, 160, 180, 231, 630, 711
Bsp1720I	GCTNAGC	1 cut(s)	377
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	3 cut(s)	191, 269, 490
BspANI	GGCC	3 cut(s)	175, 357, 460
BspCNI	CTCAG	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	9 cut(s)	6, 135, 162, 182, 341, 357, 538, 756, 882
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	6 cut(s)	155, 168, 175, 188, 226, 719
BspT107I	GGYRCC	2 cut(s)	133, 536
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	5 cut(s)	34, 366, 460, 541, 759
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	165, 176, 707
BssMI	GATC	8 cut(s)	42, 80, 99, 160, 180, 231, 630, 711
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	185, 709
Bst4CI	ACNGT	2 cut(s)	536, 566
BstC8I	GCNNGC	2 cut(s)	173, 842
BstDEI	CTNAG	1 cut(s)	377
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	526
BstFNI	CGCG	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	8 cut(s)	45, 83, 102, 163, 183, 234, 633, 714
BstMAI	GTCTC	1 cut(s)	784
BstMBI	GATC	8 cut(s)	42, 80, 99, 160, 180, 231, 630, 711
BstNI	CCWGG	2 cut(s)	185, 709
BstSCI	CCNGG	4 cut(s)	6, 183, 342, 707
BstSLI	GKGCMC	1 cut(s)	359
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	890
BstX2I	RGATCY	4 cut(s)	160, 180, 231, 711
BstXI	CCANNNNNNTGG	2 cut(s)	708, 873
BstYI	RGATCY	4 cut(s)	160, 180, 231, 711
BsuRI	GGCC	3 cut(s)	175, 357, 460
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	3 cut(s)	209, 263, 534
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	2 cut(s)	373, 766
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	173, 842
CaiI	CAGNNNCTG	1 cut(s)	304
CfoI	GCGC	1 cut(s)	376
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	5 cut(s)	4, 355, 356, 458, 880
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	134, 537
CspAI	ACCGGT	1 cut(s)	218
CviAII	CATG	2 cut(s)	166, 793
CviQI	GTAC	2 cut(s)	134, 537
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	8 cut(s)	44, 82, 101, 162, 182, 233, 632, 713
DpnII	GATC	8 cut(s)	42, 80, 99, 160, 180, 231, 630, 711
DrdI	GACNNNNNNGTC	1 cut(s)	262
DseDI	GACNNNNNNGTC	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	2 cut(s)	359, 450
Eco47I	GGWCC	2 cut(s)	4, 880
Eco57I	CTGAAG	2 cut(s)	61, 227
EcoO109I	RGGNCCY	1 cut(s)	880
EcoRII	CCWGG	2 cut(s)	183, 707
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	2 cut(s)	359, 450
ErhI	CCWWGG	1 cut(s)	165
Esp3I	CGTCTC	1 cut(s)	784
FaeI	CATG	2 cut(s)	169, 796
FaiI	YATR	9 cut(s)	167, 292, 437, 645, 675, 744, 794, 852, 862
FaqI	GGGAC	3 cut(s)	102, 455, 866
FatI	CATG	2 cut(s)	165, 792
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	192, 904
FokI	GGATG	1 cut(s)	513
FriOI	GRGCYC	2 cut(s)	359, 450
Fsp4HI	GCNGC	2 cut(s)	192, 904
FspBI	CTAG	4 cut(s)	92, 105, 146, 411
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	2 cut(s)	192, 904
HaeIII	GGCC	3 cut(s)	175, 357, 460
HapII	CCGG	4 cut(s)	8, 22, 219, 343
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	2 cut(s)	169, 796
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HincII	GTYRAC	2 cut(s)	55, 892
HindII	GTYRAC	2 cut(s)	55, 892
HinfI	GANTC	4 cut(s)	65, 263, 362, 893
HpaII	CCGG	4 cut(s)	8, 22, 219, 343
HphI	GGTGA	4 cut(s)	283, 597, 678, 819
Hpy166II	GTNNAC	3 cut(s)	55, 569, 892
Hpy188I	TCNGA	3 cut(s)	80, 226, 478
Hpy188III	TCNNGA	2 cut(s)	28, 866
Hpy8I	GTNNAC	3 cut(s)	55, 569, 892
Hpy99I	CGWCG	2 cut(s)	59, 482
HpyAV	CCTTC	8 cut(s)	79, 251, 421, 524, 528, 630, 729, 834
HpyCH4III	ACNGT	2 cut(s)	536, 566
HpyCH4IV	ACGT	3 cut(s)	141, 277, 401
HpyCH4V	TGCA	3 cut(s)	114, 253, 290
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	3 cut(s)	141, 277, 401
Hsp92II	CATG	2 cut(s)	169, 796
HspAI	GCGC	1 cut(s)	374
KpnI	GGTACC	2 cut(s)	137, 540
Kzo9I	GATC	8 cut(s)	42, 80, 99, 160, 180, 231, 630, 711
LmnI	GCTCC	3 cut(s)	321, 394, 826
Lsp1109I	GCAGC	1 cut(s)	890
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	4 cut(s)	92, 105, 146, 411
MaeII	ACGT	3 cut(s)	141, 277, 401
MaeIII	GTNAC	4 cut(s)	368, 483, 599, 913
MalI	GATC	8 cut(s)	44, 82, 101, 162, 182, 233, 632, 713
MboI	GATC	8 cut(s)	42, 80, 99, 160, 180, 231, 630, 711
MboII	GAAGA	4 cut(s)	52, 241, 274, 513
MfeI	CAATTG	1 cut(s)	885
MflI	RGATCY	4 cut(s)	160, 180, 231, 711
MhlI	GDGCHC	2 cut(s)	359, 450
MluCI	AATT	8 cut(s)	581, 659, 766, 855, 871, 885, 924, 931
MlyI	GAGTC	3 cut(s)	74, 272, 887
MmeI	TCCRAC	3 cut(s)	492, 501, 616
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	2 cut(s)	765, 934
MslI	CAYNNNNRTG	1 cut(s)	741
MspA1I	CMGCKG	1 cut(s)	490
MspI	CCGG	4 cut(s)	8, 22, 219, 343
MspR9I	CCNGG	4 cut(s)	8, 185, 344, 709
MunI	CAATTG	1 cut(s)	885
MvaI	CCWGG	2 cut(s)	185, 709
MvnI	CGCG	1 cut(s)	374
NciI	CCSGG	2 cut(s)	8, 344
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	8 cut(s)	42, 80, 99, 160, 180, 231, 630, 711
NlaIII	CATG	2 cut(s)	169, 796
NlaIV	GGNNCC	9 cut(s)	6, 135, 162, 182, 341, 357, 538, 756, 882
NmeAIII	GCCGAG	1 cut(s)	201
NmuCI	GTSAC	2 cut(s)	368, 913
PaqCI	CACCTGC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	362
PfoI	TCCNGGA	1 cut(s)	183
PinAI	ACCGGT	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	193, 905
PleI	GAGTC	3 cut(s)	73, 271, 887
PpsI	GAGTC	3 cut(s)	73, 271, 887
PpuMI	RGGWCCY	1 cut(s)	880
Psp1406I	AACGTT	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	880
Psp6I	CCWGG	2 cut(s)	183, 707
PspGI	CCWGG	2 cut(s)	183, 707
PspN4I	GGNNCC	9 cut(s)	6, 135, 162, 182, 341, 357, 538, 756, 882
PspOMI	GGGCCC	1 cut(s)	355
PspPI	GGNCC	5 cut(s)	4, 355, 356, 458, 880
PspPPI	RGGWCCY	1 cut(s)	880
PstNI	CAGNNNCTG	1 cut(s)	304
PsuI	RGATCY	4 cut(s)	160, 180, 231, 711
RsaI	GTAC	2 cut(s)	135, 538
RsaNI	GTAC	2 cut(s)	134, 537
RseI	CAYNNNNRTG	1 cut(s)	741
SalI	GTCGAC	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	765, 934
SatI	GCNGC	2 cut(s)	192, 904
Sau3AI	GATC	8 cut(s)	42, 80, 99, 160, 180, 231, 630, 711
Sau96I	GGNCC	5 cut(s)	4, 355, 356, 458, 880
SchI	GAGTC	3 cut(s)	74, 272, 887
ScrFI	CCNGG	4 cut(s)	8, 185, 344, 709
SduI	GDGCHC	2 cut(s)	359, 450
SfaNI	GCATC	1 cut(s)	240
SinI	GGWCC	2 cut(s)	4, 880
SmiMI	CAYNNNNRTG	1 cut(s)	741
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
SpeI	ACTAGT	1 cut(s)	91
Sse9I	AATT	8 cut(s)	581, 659, 766, 855, 871, 885, 924, 931
SsiI	CCGC	3 cut(s)	191, 269, 490
SspMI	CTAG	4 cut(s)	92, 105, 146, 411
StyD4I	CCNGG	4 cut(s)	6, 183, 342, 707
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	536, 566
TaiI	ACGT	3 cut(s)	144, 280, 404
TaqI	TCGA	5 cut(s)	45, 54, 83, 209, 261
TasI	AATT	8 cut(s)	581, 659, 766, 855, 871, 885, 924, 931
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	2 cut(s)	765, 934
Tru9I	TTAA	2 cut(s)	765, 934
TscAI	CASTG	2 cut(s)	373, 766
TseFI	GTSAC	2 cut(s)	368, 913
TseI	GCWGC	1 cut(s)	903
Tsp45I	GTSAC	2 cut(s)	368, 913
TspDTI	ATGAA	1 cut(s)	849
TspGWI	ACGGA	2 cut(s)	77, 352
TspRI	CASTG	2 cut(s)	373, 766
VpaK11BI	GGWCC	2 cut(s)	4, 880
XapI	RAATTY	1 cut(s)	924
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	278
XspI	CTAG	4 cut(s)	92, 105, 146, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.