Rmu_sc0001217.1_g000024

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001217.1
Physical Location & Seq
Reverse (-)
100874 .. 101501
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001217.1_g000024.1.cds

Sequence Viewer

Length: 462 bp
atggcagccttgaccagcatctatttggccgtagaaacagcctgcaatggaattcaaggtacaagacaacagctagaagttgttgggactgtggattacatagcccccgaatatgctattgaagggaaggctagtaaagaatctgacatgtttagttttaaagttgtggccttagaaattgcttgtggaaggaagagttacagtttcaatgacaacttgtcactttataagtgggtttggaaattctaccttgaagggcatcttctcgatgcagctgatgaaagattggaaatggaatttgaacatgaagaaatgaaatgcttgttaattgtgggattatggtgtacccatccccataataaggaaagaccaaacgcaggacaagtgatgaaagtacttaagcttgaagaaccattgcccgcacttccactagacatgcatcttcaacagcccctgccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

17.38

Weight (kDa)

5.08

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021643)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001217.1_g000024
rosa_roxburghii Rroxscaffold_4G00298830
rosa_rugosa Rorug05G0567300
rosa_samantha Rh4CG201600 Rh4DG188400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
AciI CCGC 1 cut(s) 420
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 3 cut(s) 51, 242, 296
AfaI GTAC 3 cut(s) 61, 346, 396
AfiI CCNNNNNNNGG 2 cut(s) 361, 377
AflII CTTAAG 1 cut(s) 398
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 7 cut(s) 56, 122, 208, 254, 302, 407, 446
AhdI GACNNNNNGTC 1 cut(s) 217
AluBI AGCT 3 cut(s) 73, 275, 403
AluI AGCT 3 cut(s) 73, 275, 403
AlwNI CAGNNNCTG 1 cut(s) 454
AoxI GGCC 2 cut(s) 27, 168
ApeKI GCWGC 2 cut(s) 5, 272
ApoI RAATTY 3 cut(s) 51, 242, 296
BbvI GCAGC 2 cut(s) 17, 284
BccI CCATC 1 cut(s) 357
BceAI ACGGC 1 cut(s) 14
BfaI CTAG 3 cut(s) 74, 132, 431
BfrI CTTAAG 1 cut(s) 398
BisI GCNGC 2 cut(s) 6, 273
BlsI GCNGC 2 cut(s) 7, 274
BmcAI AGTACT 1 cut(s) 396
BmeRI GACNNNNNGTC 1 cut(s) 217
BmsI GCATC 4 cut(s) 27, 259, 268, 448
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 377
Bse3DI GCAATG 2 cut(s) 52, 413
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 2 cut(s) 361, 377
BseMI GCAATG 2 cut(s) 52, 413
BseXI GCAGC 2 cut(s) 17, 284
BshFI GGCC 2 cut(s) 29, 170
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 2 cut(s) 361, 377
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 2 cut(s) 29, 170
BspACI CCGC 1 cut(s) 420
BspANI GGCC 2 cut(s) 29, 170
BspTI CTTAAG 1 cut(s) 398
BsrDI GCAATG 2 cut(s) 52, 413
Bst4CI ACNGT 2 cut(s) 91, 203
Bst6I CTCTTC 1 cut(s) 188
BstAFI CTTAAG 1 cut(s) 398
BstC8I GCNNGC 2 cut(s) 43, 420
BstDEI CTNAG 1 cut(s) 172
BstF5I GGATG 1 cut(s) 349
BstNSI RCATGY 2 cut(s) 151, 439
BstV1I GCAGC 2 cut(s) 17, 284
BsuRI GGCC 2 cut(s) 29, 170
BtsCI GGATG 1 cut(s) 349
Cac8I GCNNGC 2 cut(s) 43, 420
CaiI CAGNNNCTG 1 cut(s) 454
Csp6I GTAC 3 cut(s) 60, 345, 395
CviAII CATG 3 cut(s) 148, 305, 436
CviQI GTAC 3 cut(s) 60, 345, 395
DdeI CTNAG 1 cut(s) 172
DraI TTTAAA 1 cut(s) 160
DriI GACNNNNNGTC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 188
Eam1105I GACNNNNNGTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 51
EcoT22I ATGCAT 1 cut(s) 441
FaeI CATG 3 cut(s) 151, 308, 439
FaiI YATR 8 cut(s) 101, 114, 149, 228, 306, 340, 357, 437
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 1 cut(s) 100
FatI CATG 3 cut(s) 147, 304, 435
FauI CCCGC 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 6, 273
FokI GGATG 1 cut(s) 336
Fsp4HI GCNGC 2 cut(s) 6, 273
FspBI CTAG 3 cut(s) 74, 132, 431
GluI GCNGC 2 cut(s) 6, 273
HaeIII GGCC 2 cut(s) 29, 170
Hin1II CATG 3 cut(s) 151, 308, 439
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 345
HpyAV CCTTC 4 cut(s) 116, 121, 183, 248
HpyCH4III ACNGT 2 cut(s) 91, 203
HpyCH4V TGCA 3 cut(s) 45, 272, 439
HpyF3I CTNAG 1 cut(s) 172
Hsp92II CATG 3 cut(s) 151, 308, 439
LpnPI CCDG 3 cut(s) 28, 55, 363
Lsp1109I GCAGC 2 cut(s) 17, 284
LweI GCATC 4 cut(s) 27, 259, 268, 448
MaeI CTAG 3 cut(s) 74, 132, 431
MaeIII GTNAC 2 cut(s) 197, 219
MboII GAAGA 5 cut(s) 205, 254, 320, 419, 434
MluCI AATT 5 cut(s) 51, 177, 242, 296, 327
Mph1103I ATGCAT 1 cut(s) 441
MseI TTAA 4 cut(s) 159, 326, 399, 460
MspA1I CMGCKG 1 cut(s) 275
MspCI CTTAAG 1 cut(s) 398
NlaIII CATG 3 cut(s) 151, 308, 439
NmuCI GTSAC 1 cut(s) 219
NsiI ATGCAT 1 cut(s) 441
NspI RCATGY 2 cut(s) 151, 439
PciI ACATGT 1 cut(s) 147
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 7, 274
PscI ACATGT 1 cut(s) 147
PsiI TTATAA 1 cut(s) 228
PstNI CAGNNNCTG 1 cut(s) 454
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 3 cut(s) 61, 346, 396
RsaNI GTAC 3 cut(s) 60, 345, 395
SaqAI TTAA 4 cut(s) 159, 326, 399, 460
SatI GCNGC 2 cut(s) 6, 273
ScaI AGTACT 1 cut(s) 396
SetI ASST 5 cut(s) 61, 75, 252, 277, 405
SfaNI GCATC 4 cut(s) 27, 259, 268, 448
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 5 cut(s) 51, 177, 242, 296, 327
SsiI CCGC 1 cut(s) 420
SspMI CTAG 3 cut(s) 74, 132, 431
TaaI ACNGT 2 cut(s) 91, 203
TaqI TCGA 1 cut(s) 267
TasI AATT 5 cut(s) 51, 177, 242, 296, 327
TatI WGTACW 1 cut(s) 394
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 4 cut(s) 159, 326, 399, 460
Tru9I TTAA 4 cut(s) 159, 326, 399, 460
TseFI GTSAC 1 cut(s) 219
TseI GCWGC 2 cut(s) 5, 272
Tsp45I GTSAC 1 cut(s) 219
TspDTI ATGAA 4 cut(s) 294, 321, 329, 404
Vha464I CTTAAG 1 cut(s) 398
XapI RAATTY 3 cut(s) 51, 242, 296
XceI RCATGY 2 cut(s) 151, 439
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XspI CTAG 3 cut(s) 74, 132, 431
ZrmI AGTACT 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.