Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002093

Physical Location & Seq

Genomic Coordinates Forward (+)

76048731 .. 76052601

Gene Structure 3871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0567300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGCCACAGCAGCTATCAACTTAGCCCTCGTAAAGTCGTCGCCTTTCTTTGTTCCCAAGCCTCAAAACCCTTCAAAGCTTAGGGTTTTCACTCTCCGATGCTCCTCCGCCACCGCCAATGCCGTCTCAGACTTGTCCGAAAGACCTTGGAAGACTTCAGATGCTAGACTTGTGCTTGAGGATGGTTCAATATGGAGGGCAAAGTCATTTGGTGCTTCTGGAACCCAAGTTGGTGAAGTTGTATTCAATACATCCTTGACTGGGTATCAAGAAATTATTACAGACCCGAGTTATGCTGGCCAATTTGTCCTGATGACAAACCCCCAAATTGGAAATACTGGTGTAAATTTTGATGATGAAGAATCAAGGCAGTGCTTTCTTGGTGGTCTAGTGATCAGAAGTTTAAGTATCAGTACCTCAAATTATAGATGTGCAGAAACTCTTGGTGATTATTTAGCAAAAAGGAATATCATGGGAATTTATGATGTGGACACACGGGCTATCACCCGCAGATTAAGGCAAGATGGAAGCCTTATCGGTGTTTTGAGCACAGAAGAGACCAAAACAGATGAGGAACTATTGGAAATGTCTCGTTCATGGGACATTGTTGGGGTTGATTTAATAAGTGGCGTGTCGTGCAAGACCCCTCATGAGTGGGTTGATAAAACCAATTCTGAGTGGGAATTTATGTCCAACAGAAAAGATGGAGAGGCTTTTCGTGTTGTTGCATATGATTTTGGAATCAAGAGCAACATACTTAGGCGGTTGGCTTCCTATGGCTGCAAAATTACTGTGGTACCTTCAACATGGCCAGCATCAGAGACTCTTAAGTTGAAACCAGATGGGGTCCTTTTCAGCAATGGCCCCGGAGACCCATCTGCGGTTCCCTATGCTGTTGAAACAGTCAAGCAGATTCTTGGAAAGGTTCCTGTTTTTGGAATTTGCATGGGCCATCAGTTGCTTGGCTTGGCATTAGGCGGTACAACTTTTAAAATGAAGTTCGGTCACCATGGAGGAAATCATCCAGTCCGTAATCTTCGTACTGGAGATGTTGAGATAAGCGCTCAGAATCACAACTATGCGGTTGACCCCAAATCACTTCCTGATGGAGTAGAAGTAACTCATGTCAATCTCAACGATGGAAGCTGTGCTGGCCTTGCTTATCCTGCACGAAACATCATGTCTATTCAGTACCACCCGGAAGCATCCCCAGGACCTCATGATTCAGATTATGCTTTTAGAGAATTCATTGAGCTGATGAAGAAAGTGAAAGTAAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

427

Amino Acids

46.74

Weight (kDa)

6.33

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_sm_chain	PF00988	57 - 181	3.1e-47	Carbamoyl-phosphate synthase small chain, CPSase domain
GATase	PF00117	243 - 418	4.6e-55	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14240
fragaria_vesca	FvH4_6g20890 FvH4_6g20890 FvH4_6g20890
malus_domestica	MD09G1015300.v1.1 MD17G1015400.v1.1
prunus_persica	Prupe.3G302500_v2.0.a1 Prupe.6G027300_v2.0.a1 Prupe.6G027300_v2.0.a1
pyrus_communis	pycom111g01240 pycom17g01260
rosa_chinensis	RchiOBHm_Chr1g0359641 RchiOBHm_Chr1g0359651 RchiOBHm_Chr2g0174741 RchiOBHm_Chr3g0477231 RchiOBHm_Chr3g0477241 RchiOBHm_Chr6g0252661
rosa_laevigata	RLG00000023735 RLG00000035432
rosa_multiflora	Rmu_sc0030318.1_g000001 Rmu_ssc0000313.1_g000003
rosa_roxburghii	Rroxscaffold_6G00404300 Rroxscaffold_6G00404780
rosa_rugosa	Rorug02G0109900 Rorug03G0158900 Rorug05G0567300 Rorug07G0186500
rosa_samantha	Rh1AG466100 Rh2AG497000 Rh2AG660500 Rh2BG671300 Rh2CG483100 Rh3AG209500 Rh3BG242800 Rh3BG242900 Rh3CG237000 Rh3DG236100 Rh4AG255500 Rh4BG260900 Rh6BG064900 Rh7BG354100
rosa_wichuraiana	Rw0G000240 Rw0G021750 Rw2G054110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	796
AccB1I	GGYRCC	1 cut(s)	796
AciI	CCGC	7 cut(s)	108, 114, 508, 763, 881, 978, 1082
AcoI	YGGCCR	3 cut(s)	3, 298, 809
AcsI	RAATTY	5 cut(s)	346, 477, 683, 939, 1244
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	5 cut(s)	415, 798, 982, 1042, 1193
AfeI	AGCGCT	1 cut(s)	1063
AfiI	CCNNNNNNNGG	4 cut(s)	261, 329, 880, 935
AflII	CTTAAG	1 cut(s)	827
AgsI	TTSAA	6 cut(s)	75, 189, 247, 804, 835, 899
AjnI	CCWGG	1 cut(s)	1210
AluBI	AGCT	4 cut(s)	14, 79, 1146, 1255
AluI	AGCT	4 cut(s)	14, 79, 1146, 1255
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	5 cut(s)	130, 551, 594, 815, 864
Ama87I	CYCGRG	1 cut(s)	286
Aor51HI	AGCGCT	1 cut(s)	1063
AoxI	GGCC	6 cut(s)	3, 298, 809, 862, 949, 1153
ApeKI	GCWGC	2 cut(s)	11, 780
ApoI	RAATTY	5 cut(s)	346, 477, 683, 939, 1244
Asp718I	GGTACC	1 cut(s)	796
AspLEI	GCGC	1 cut(s)	1064
AspS9I	GGNCC	4 cut(s)	847, 863, 949, 1214
AsuC2I	CCSGG	2 cut(s)	867, 1199
AsuHPI	GGTGA	4 cut(s)	245, 458, 496, 998
AvaI	CYCGRG	1 cut(s)	286
AvaII	GGWCC	2 cut(s)	847, 1214
BaeI	ACNNNNGTAYC	2 cut(s)	780, 813
BalI	TGGCCA	3 cut(s)	5, 300, 811
BanI	GGYRCC	1 cut(s)	796
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	551
BbvI	GCAGC	2 cut(s)	23, 767
BccI	CCATC	8 cut(s)	176, 518, 698, 836, 883, 960, 1100, 1133
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	1212
BclI	TGATCA	1 cut(s)	393
BcnI	CCSGG	2 cut(s)	867, 1199
BcoDI	GTCTC	5 cut(s)	130, 551, 594, 815, 864
BfaI	CTAG	2 cut(s)	165, 389
BfoI	RGCGCY	1 cut(s)	1065
BfrI	CTTAAG	1 cut(s)	827
BisI	GCNGC	2 cut(s)	12, 781
BlsI	GCNGC	2 cut(s)	13, 782
Bme1390I	CCNGG	3 cut(s)	867, 1199, 1212
Bme18I	GGWCC	2 cut(s)	847, 1214
BmeT110I	CYCGRG	1 cut(s)	286
BmgT120I	GGNCC	4 cut(s)	847, 863, 949, 1214
BmiI	GGNNCC	6 cut(s)	223, 798, 848, 865, 885, 927
BmrFI	CCNGG	3 cut(s)	867, 1199, 1212
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	4 cut(s)	89, 151, 824, 1214
BmuI	ACTGGG	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	158
BpmI	CTGGAG	1 cut(s)	1065
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	867, 1199
BsaI	GGTCTC	2 cut(s)	551, 864
BsaJI	CCNNGG	4 cut(s)	146, 865, 1009, 1210
BsaXI	ACNNNNNCTCC	2 cut(s)	1101, 1131
Bsc4I	CCNNNNNNNGG	4 cut(s)	261, 329, 880, 935
Bse1I	ACTGG	4 cut(s)	265, 343, 1025, 1048
Bse3DI	GCAATG	1 cut(s)	865
BseBI	CCWGG	1 cut(s)	1212
BseDI	CCNNGG	4 cut(s)	146, 865, 1009, 1210
BseGI	GGATG	4 cut(s)	187, 251, 1021, 1205
BseLI	CCNNNNNNNGG	4 cut(s)	261, 329, 880, 935
BseMI	GCAATG	1 cut(s)	865
BseMII	CTCAG	3 cut(s)	141, 666, 1079
BseNI	ACTGG	4 cut(s)	265, 343, 1025, 1048
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	23, 767
BsgI	GTGCAG	2 cut(s)	453, 1152
BshFI	GGCC	6 cut(s)	5, 300, 811, 864, 951, 1155
BshNI	GGYRCC	1 cut(s)	796
BsiHKAI	GWGCWC	1 cut(s)	551
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	2 cut(s)	867, 1199
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	4 cut(s)	261, 329, 880, 935
BsmAI	GTCTC	5 cut(s)	130, 551, 594, 815, 864
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	6 cut(s)	5, 300, 811, 864, 951, 1155
Bso31I	GGTCTC	2 cut(s)	551, 864
BsoBI	CYCGRG	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp143I	GATC	1 cut(s)	393
Bsp19I	CCATGG	1 cut(s)	1009
BspACI	CCGC	7 cut(s)	108, 114, 508, 763, 881, 978, 1082
BspANI	GGCC	6 cut(s)	5, 300, 811, 864, 951, 1155
BspCNI	CTCAG	3 cut(s)	140, 667, 1078
BspHI	TCATGA	2 cut(s)	649, 1219
BspLI	GGNNCC	6 cut(s)	223, 798, 848, 865, 885, 927
BspT107I	GGYRCC	1 cut(s)	796
BspTI	CTTAAG	1 cut(s)	827
BspTNI	GGTCTC	2 cut(s)	551, 864
BsrDI	GCAATG	1 cut(s)	865
BsrI	ACTGG	4 cut(s)	265, 343, 1025, 1048
BssECI	CCNNGG	4 cut(s)	146, 865, 1009, 1210
BssMI	GATC	1 cut(s)	393
BssT1I	CCWWGG	2 cut(s)	146, 1009
Bst2UI	CCWGG	1 cut(s)	1212
Bst4CI	ACNGT	2 cut(s)	793, 904
Bst6I	CTCTTC	1 cut(s)	549
BstAFI	CTTAAG	1 cut(s)	827
BstC8I	GCNNGC	3 cut(s)	298, 813, 1153
BstDEI	CTNAG	6 cut(s)	22, 80, 127, 675, 758, 1065
BstDSI	CCRYGG	1 cut(s)	1009
BstEII	GGTNACC	1 cut(s)	1004
BstF5I	GGATG	4 cut(s)	187, 251, 1021, 1205
BstH2I	RGCGCY	1 cut(s)	1065
BstHHI	GCGC	1 cut(s)	1064
BstKTI	GATC	1 cut(s)	396
BstMAI	GTCTC	5 cut(s)	130, 551, 594, 815, 864
BstMBI	GATC	1 cut(s)	393
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 636, 1152, 1157, 1166
BstNI	CCWGG	1 cut(s)	1212
BstPI	GGTNACC	1 cut(s)	1004
BstSCI	CCNGG	3 cut(s)	865, 1197, 1210
BstV1I	GCAGC	2 cut(s)	23, 767
BstV2I	GAAGAC	1 cut(s)	158
BsuRI	GGCC	6 cut(s)	5, 300, 811, 864, 951, 1155
BtgI	CCRYGG	1 cut(s)	1009
BtsCI	GGATG	4 cut(s)	187, 251, 1021, 1205
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	1 cut(s)	377
Cac8I	GCNNGC	3 cut(s)	298, 813, 1153
CciI	TCATGA	2 cut(s)	649, 1219
CfoI	GCGC	1 cut(s)	1064
Cfr13I	GGNCC	4 cut(s)	847, 863, 949, 1214
Csp6I	GTAC	5 cut(s)	414, 797, 981, 1041, 1192
CviQI	GTAC	5 cut(s)	414, 797, 981, 1041, 1192
DdeI	CTNAG	6 cut(s)	22, 80, 127, 675, 758, 1065
DpnI	GATC	1 cut(s)	395
DpnII	GATC	1 cut(s)	393
DraI	TTTAAA	1 cut(s)	991
EaeI	YGGCCR	3 cut(s)	3, 298, 809
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	146, 1009
Eco31I	GGTCTC	2 cut(s)	551, 864
Eco47I	GGWCC	2 cut(s)	847, 1214
Eco47III	AGCGCT	1 cut(s)	1063
Eco57I	CTGAAG	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	286
Eco91I	GGTNACC	1 cut(s)	1004
EcoO109I	RGGNCCY	2 cut(s)	847, 1214
EcoO65I	GGTNACC	1 cut(s)	1004
EcoRI	GAATTC	1 cut(s)	1244
EcoRII	CCWGG	1 cut(s)	1210
EcoT14I	CCWWGG	2 cut(s)	146, 1009
EcoT22I	ATGCAT	1 cut(s)	1282
ErhI	CCWWGG	2 cut(s)	146, 1009
Esp3I	CGTCTC	1 cut(s)	130
FaqI	GGGAC	1 cut(s)	614
FauI	CCCGC	1 cut(s)	515
FauNDI	CATATG	1 cut(s)	730
FbaI	TGATCA	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	12, 781
FokI	GGATG	4 cut(s)	194, 238, 1008, 1192
Fsp4HI	GCNGC	2 cut(s)	12, 781
FspBI	CTAG	2 cut(s)	165, 389
GlaI	GCGC	1 cut(s)	1063
GluI	GCNGC	2 cut(s)	12, 781
GsuI	CTGGAG	1 cut(s)	1065
HaeII	RGCGCY	1 cut(s)	1065
HaeIII	GGCC	6 cut(s)	5, 300, 811, 864, 951, 1155
HapII	CCGG	2 cut(s)	867, 1199
HhaI	GCGC	1 cut(s)	1064
Hin6I	GCGC	1 cut(s)	1062
HinP1I	GCGC	1 cut(s)	1062
HincII	GTYRAC	1 cut(s)	1087
HindII	GTYRAC	1 cut(s)	1087
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	6 cut(s)	362, 741, 823, 913, 1069, 1223
HpaII	CCGG	2 cut(s)	867, 1199
HphI	GGTGA	4 cut(s)	245, 458, 496, 998
Hpy166II	GTNNAC	2 cut(s)	490, 1087
Hpy188I	TCNGA	9 cut(s)	98, 130, 139, 160, 398, 676, 820, 1068, 1228
Hpy188III	TCNNGA	7 cut(s)	219, 269, 310, 650, 745, 1103, 1220
Hpy8I	GTNNAC	2 cut(s)	490, 1087
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	81, 810
HpyCH4III	ACNGT	2 cut(s)	793, 904
HpyCH4V	TGCA	7 cut(s)	434, 639, 728, 783, 945, 1169, 1280
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 636, 1152, 1157, 1166
HpyF3I	CTNAG	6 cut(s)	22, 80, 127, 675, 758, 1065
HspAI	GCGC	1 cut(s)	1062
KpnI	GGTACC	1 cut(s)	800
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	1 cut(s)	393
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	2 cut(s)	23, 767
LweI	GCATC	4 cut(s)	89, 151, 824, 1214
MaeI	CTAG	2 cut(s)	165, 389
MaeIII	GTNAC	2 cut(s)	1004, 1117
MalI	GATC	1 cut(s)	395
MboI	GATC	1 cut(s)	393
MboII	GAAGA	5 cut(s)	163, 371, 566, 1028, 1273
MhlI	GDGCHC	1 cut(s)	551
MlsI	TGGCCA	3 cut(s)	5, 300, 811
MluNI	TGGCCA	3 cut(s)	5, 300, 811
MlyI	GAGTC	1 cut(s)	817
MmeI	TCCRAC	1 cut(s)	717
Mox20I	TGGCCA	3 cut(s)	5, 300, 811
Mph1103I	ATGCAT	1 cut(s)	1282
MscI	TGGCCA	3 cut(s)	5, 300, 811
MseI	TTAA	5 cut(s)	404, 515, 620, 828, 990
MslI	CAYNNNNRTG	1 cut(s)	1077
Msp20I	TGGCCA	3 cut(s)	5, 300, 811
MspCI	CTTAAG	1 cut(s)	827
MspI	CCGG	2 cut(s)	867, 1199
MspR9I	CCNGG	3 cut(s)	867, 1199, 1212
MvaI	CCWGG	1 cut(s)	1212
MwoI	GCNNNNNNNGC	5 cut(s)	11, 636, 1152, 1157, 1166
NciI	CCSGG	2 cut(s)	867, 1199
NcoI	CCATGG	1 cut(s)	1009
NdeI	CATATG	1 cut(s)	730
NdeII	GATC	1 cut(s)	393
NlaIV	GGNNCC	6 cut(s)	223, 798, 848, 865, 885, 927
NmuCI	GTSAC	1 cut(s)	1004
NsiI	ATGCAT	1 cut(s)	1282
PagI	TCATGA	2 cut(s)	649, 1219
PfeI	GAWTC	5 cut(s)	362, 741, 913, 1069, 1223
PkrI	GCNGC	2 cut(s)	13, 782
PleI	GAGTC	1 cut(s)	817
PpsI	GAGTC	1 cut(s)	817
PpuMI	RGGWCCY	2 cut(s)	847, 1214
Psp5II	RGGWCCY	2 cut(s)	847, 1214
Psp6I	CCWGG	1 cut(s)	1210
PspEI	GGTNACC	1 cut(s)	1004
PspGI	CCWGG	1 cut(s)	1210
PspN4I	GGNNCC	6 cut(s)	223, 798, 848, 865, 885, 927
PspPI	GGNCC	4 cut(s)	847, 863, 949, 1214
PspPPI	RGGWCCY	2 cut(s)	847, 1214
RsaI	GTAC	5 cut(s)	415, 798, 982, 1042, 1193
RsaNI	GTAC	5 cut(s)	414, 797, 981, 1041, 1192
RseI	CAYNNNNRTG	1 cut(s)	1077
SaqAI	TTAA	5 cut(s)	404, 515, 620, 828, 990
SatI	GCNGC	2 cut(s)	12, 781
Sau3AI	GATC	1 cut(s)	393
Sau96I	GGNCC	4 cut(s)	847, 863, 949, 1214
SchI	GAGTC	1 cut(s)	817
ScrFI	CCNGG	3 cut(s)	867, 1199, 1212
SduI	GDGCHC	1 cut(s)	551
SetI	ASST	9 cut(s)	16, 81, 148, 419, 802, 927, 1148, 1219, 1257
SfaNI	GCATC	4 cut(s)	89, 151, 824, 1214
SinI	GGWCC	2 cut(s)	847, 1214
SmiMI	CAYNNNNRTG	1 cut(s)	1077
SmlI	CTYRAG	2 cut(s)	176, 827
SmoI	CTYRAG	2 cut(s)	176, 827
SsiI	CCGC	7 cut(s)	108, 114, 508, 763, 881, 978, 1082
SspMI	CTAG	2 cut(s)	165, 389
StyD4I	CCNGG	3 cut(s)	865, 1197, 1210
StyI	CCWWGG	2 cut(s)	146, 1009
TaaI	ACNGT	2 cut(s)	793, 904
TaqII	GACCGA	1 cut(s)	992
TfiI	GAWTC	5 cut(s)	362, 741, 913, 1069, 1223
Tru1I	TTAA	5 cut(s)	404, 515, 620, 828, 990
Tru9I	TTAA	5 cut(s)	404, 515, 620, 828, 990
TscAI	CASTG	1 cut(s)	377
TseFI	GTSAC	1 cut(s)	1004
TseI	GCWGC	2 cut(s)	11, 780
Tsp45I	GTSAC	1 cut(s)	1004
TspDTI	ATGAA	5 cut(s)	372, 585, 1010, 1237, 1274
TspGWI	ACGGA	1 cut(s)	1019
TspRI	CASTG	1 cut(s)	377
Vha464I	CTTAAG	1 cut(s)	827
VpaK11BI	GGWCC	2 cut(s)	847, 1214
XapI	RAATTY	5 cut(s)	346, 477, 683, 939, 1244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	959
XspI	CTAG	2 cut(s)	165, 389
Zsp2I	ATGCAT	1 cut(s)	1282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.