Rroxscaffold_6G00404780

Phosducin-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002093
Physical Location & Seq
Forward (+)
27294294 .. 27296555
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404780.1

Sequence Viewer

Length: 759 bp
ATGGGGGACTATCACTATATCTACAAGGACTTGGACGGAGCCTCCACCCAGTGGGACGATATTCAGGCAAAGCTCGGCAATCTTCCGCCGAAGAAGCCGGCGTTTAAGCCCCCGCCCTTCACTCCGGCCGAGGACGAAGCCTCTCTTCCCAAAAACAAGTCTTGGATCGATGACAAGACCGAGCAGGACCTCGAAGATCTCGAAGACGATCCCGATCTCGACGACGATCGCTTCCTCGAGGAATACAGGAGGAAGAGGCTGTCTGAATTGAGAGAAGCAGCGAAGGTTGCAAGGTTTGGATCAGTGGTTCCGATTTCGGGATCAGATTTTGTGCGTGAGGTTTCTCAAGCTCCACCTGACGTTTGGGTGGTGGTGATTCTGTACAAAGAAGGAATTGCAGAGTGTGGATTGTTGATGCAGTGTCTGGAAGATTTGGCAACCAAGTACCCAGCAACCAAATTTGTGAAAATAATATCCACAGACTGCATTCCTAACTACCCGGATCGTAATCTTCCCACTCTTTTAGTGTACAACAGTGGCGCTGTCAAGGCCAATCACGTTGGGTTGCGCAGCTTTGGTCGGAGGTGCACACCTGAAGGTGTGGCATTAGTTCTCTGTCAATCAGATCCTGTACTTAATGATGGGCAGAGTGTTAATGGTCGATCAAGGGAAGCTGTGATTGAGGGAGTTCGCAAGAGGTTCATAGAGAAAGTTGTGACACAACATGAAGATAAGGACGAGGGATATTCAAGTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phosducin

Protein Analysis

252

Amino Acids

28.31

Weight (kDa)

4.86

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phosducin PF02114 70 - 187 3.2e-15 Phosducin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 236
Acc16I TGCGCA 1 cut(s) 569
AccB7I CCANNNNNTGG 1 cut(s) 51
AciI CCGC 2 cut(s) 86, 113
AclWI GGATC 6 cut(s) 173, 203, 307, 328, 510, 620
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 615
AdeI CACNNNGTG 1 cut(s) 51
AfaI GTAC 4 cut(s) 383, 446, 530, 633
AfiI CCNNNNNNNGG 2 cut(s) 51, 317
AgsI TTSAA 1 cut(s) 750
AloI GAACNNNNNNTCC 2 cut(s) 291, 323
AluBI AGCT 4 cut(s) 73, 350, 573, 674
AluI AGCT 4 cut(s) 73, 350, 573, 674
Alw21I GWGCWC 1 cut(s) 590
Alw44I GTGCAC 1 cut(s) 586
AlwI GGATC 6 cut(s) 173, 203, 307, 328, 510, 620
AlwNI CAGNNNCTG 2 cut(s) 424, 629
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 2 cut(s) 126, 549
ApaLI GTGCAC 1 cut(s) 586
ApeKI GCWGC 2 cut(s) 278, 570
ApoI RAATTY 1 cut(s) 458
AspLEI GCGC 2 cut(s) 542, 570
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 385
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 590
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 590
BbvI GCAGC 2 cut(s) 290, 582
BccI CCATC 1 cut(s) 635
BcnI CCSGG 1 cut(s) 500
BfaI CTAG 1 cut(s) 757
BfoI RGCGCY 1 cut(s) 543
BglII AGATCT 1 cut(s) 196
BisI GCNGC 2 cut(s) 279, 571
BlsI GCNGC 2 cut(s) 280, 572
Bme1390I CCNGG 1 cut(s) 500
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 40, 309
BmrFI CCNGG 1 cut(s) 500
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 405
BmuI ACTGGG 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 500
Bsa29I ATCGAT 1 cut(s) 168
BsaBI GATNNNNATC 2 cut(s) 213, 507
BsaJI CCNNGG 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 317
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 49
Bse8I GATNNNNATC 2 cut(s) 213, 507
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 129
BseJI GATNNNNATC 2 cut(s) 213, 507
BseLI CCNNNNNNNGG 2 cut(s) 51, 317
BseNI ACTGG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 590
BseX3I CGGCCG 1 cut(s) 126
BseXI GCAGC 2 cut(s) 290, 582
BseYI CCCAGC 1 cut(s) 448
Bsh1285I CGRYCG 2 cut(s) 129, 229
BshFI GGCC 2 cut(s) 128, 551
BshVI ATCGAT 1 cut(s) 168
BsiEI CGRYCG 2 cut(s) 129, 229
BsiHKAI GWGCWC 1 cut(s) 590
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 3 cut(s) 98, 125, 500
BslFI GGGAC 2 cut(s) 20, 68
BslI CCNNNNNNNGG 2 cut(s) 51, 317
BsmFI GGGAC 2 cut(s) 20, 68
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 2 cut(s) 128, 551
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 590
Bsp1407I TGTACA 2 cut(s) 381, 528
BspACI CCGC 2 cut(s) 86, 113
BspANI GGCC 2 cut(s) 128, 551
BspDI ATCGAT 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 40, 309
BspPI GGATC 6 cut(s) 173, 203, 307, 328, 510, 620
BsrFI RCCGGY 1 cut(s) 97
BsrGI TGTACA 2 cut(s) 381, 528
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 536
Bst6I CTCTTC 2 cut(s) 150, 248
BstAUI TGTACA 2 cut(s) 381, 528
BstC8I GCNNGC 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 2 cut(s) 542, 570
BstMCI CGRYCG 2 cut(s) 129, 229
BstMWI GCNNNNNNNGC 3 cut(s) 94, 287, 548
BstSCI CCNGG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 590
BstV1I GCAGC 2 cut(s) 290, 582
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 2 cut(s) 196, 625
BstYI RGATCY 2 cut(s) 196, 625
BstZI CGGCCG 1 cut(s) 126
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 2 cut(s) 128, 551
BsuTUI ATCGAT 1 cut(s) 168
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 4 cut(s) 56, 309, 425, 541
Cac8I GCNNGC 1 cut(s) 99
CaiI CAGNNNCTG 2 cut(s) 424, 629
CfoI GCGC 2 cut(s) 542, 570
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 187
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 4 cut(s) 382, 445, 529, 632
CviAII CATG 1 cut(s) 725
CviQI GTAC 4 cut(s) 382, 445, 529, 632
DraIII CACNNNGTG 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 126
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 2 cut(s) 150, 248
EarI CTCTTC 2 cut(s) 150, 248
EciI GGCGGA 1 cut(s) 75
EclXI CGGCCG 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 187
Eco52I CGGCCG 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 615
Eco88I CYCGRG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 187
FaeI CATG 1 cut(s) 728
FaiI YATR 3 cut(s) 18, 704, 726
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 2 cut(s) 20, 68
FatI CATG 1 cut(s) 724
FauI CCCGC 1 cut(s) 120
Fnu4HI GCNGC 2 cut(s) 279, 571
Fsp4HI GCNGC 2 cut(s) 279, 571
FspBI CTAG 1 cut(s) 757
FspI TGCGCA 1 cut(s) 569
GlaI GCGC 2 cut(s) 541, 569
GluI GCNGC 2 cut(s) 279, 571
GsaI CCCAGC 1 cut(s) 452
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 2 cut(s) 128, 551
HapII CCGG 3 cut(s) 98, 125, 500
HhaI GCGC 2 cut(s) 542, 570
Hin1II CATG 1 cut(s) 728
Hin6I GCGC 2 cut(s) 540, 568
HinP1I GCGC 2 cut(s) 540, 568
HinfI GANTC 1 cut(s) 376
HpaII CCGG 3 cut(s) 98, 125, 500
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 2 cut(s) 529, 588
Hpy188I TCNGA 5 cut(s) 265, 312, 325, 582, 625
Hpy188III TCNNGA 5 cut(s) 200, 212, 218, 318, 425
Hpy8I GTNNAC 2 cut(s) 529, 588
Hpy99I CGWCG 2 cut(s) 224, 227
HpyAV CCTTC 4 cut(s) 127, 277, 383, 590
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4IV ACGT 2 cut(s) 360, 558
HpyCH4V TGCA 5 cut(s) 290, 398, 418, 486, 588
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 287, 548
HpySE526I ACGT 2 cut(s) 360, 558
Hsp92II CATG 1 cut(s) 728
HspAI GCGC 2 cut(s) 540, 568
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
LmnI GCTCC 2 cut(s) 38, 355
Lsp1109I GCAGC 2 cut(s) 290, 582
LweI GCATC 1 cut(s) 405
MaeI CTAG 1 cut(s) 757
MaeII ACGT 2 cut(s) 360, 558
MaeIII GTNAC 2 cut(s) 715, 752
MboII GAAGA 9 cut(s) 74, 103, 137, 206, 215, 265, 440, 503, 740
MflI RGATCY 2 cut(s) 196, 625
MhlI GDGCHC 1 cut(s) 590
MluCI AATT 3 cut(s) 266, 393, 458
MmeI TCCRAC 1 cut(s) 560
MroNI GCCGGC 1 cut(s) 97
MseI TTAA 3 cut(s) 105, 636, 654
MspI CCGG 3 cut(s) 98, 125, 500
MspR9I CCNGG 1 cut(s) 500
Mva1269I GAATGC 1 cut(s) 486
MwoI GCNNNNNNNGC 3 cut(s) 94, 287, 548
NaeI GCCGGC 1 cut(s) 99
NciI CCSGG 1 cut(s) 500
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 1 cut(s) 728
NlaIV GGNNCC 2 cut(s) 40, 309
NmeAIII GCCGAG 2 cut(s) 54, 154
NmuCI GTSAC 2 cut(s) 715, 752
NsbI TGCGCA 1 cut(s) 569
PaeR7I CTCGAG 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 486
PdiI GCCGGC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 376
PflMI CCANNNNNTGG 1 cut(s) 51
PkrI GCNGC 2 cut(s) 280, 572
Ple19I CGATCG 1 cut(s) 229
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 448
PspN4I GGNNCC 2 cut(s) 40, 309
PspPI GGNCC 1 cut(s) 187
PspPPI RGGWCCY 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 236
PstNI CAGNNNCTG 2 cut(s) 424, 629
PsuI RGATCY 2 cut(s) 196, 625
PvuI CGATCG 1 cut(s) 229
RsaI GTAC 4 cut(s) 383, 446, 530, 633
RsaNI GTAC 4 cut(s) 382, 445, 529, 632
SaqAI TTAA 3 cut(s) 105, 636, 654
SatI GCNGC 2 cut(s) 279, 571
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 500
SduI GDGCHC 1 cut(s) 590
SfaNI GCATC 1 cut(s) 405
Sfr274I CTCGAG 1 cut(s) 236
SinI GGWCC 1 cut(s) 187
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 2 cut(s) 236, 345
SmoI CTYRAG 2 cut(s) 236, 345
Sse9I AATT 3 cut(s) 266, 393, 458
SsiI CCGC 2 cut(s) 86, 113
SspMI CTAG 1 cut(s) 757
StyD4I CCNGG 1 cut(s) 498
TaaI ACNGT 1 cut(s) 536
TaiI ACGT 2 cut(s) 363, 561
TaqI TCGA 6 cut(s) 168, 192, 201, 219, 237, 661
TaqII GACCGA 1 cut(s) 194
TasI AATT 3 cut(s) 266, 393, 458
TatI WGTACW 3 cut(s) 381, 528, 631
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 3 cut(s) 105, 636, 654
Tru9I TTAA 3 cut(s) 105, 636, 654
TscAI CASTG 4 cut(s) 56, 309, 425, 541
TseFI GTSAC 2 cut(s) 715, 752
TseI GCWGC 2 cut(s) 278, 570
Tsp45I GTSAC 2 cut(s) 715, 752
TspDTI ATGAA 2 cut(s) 691, 741
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 4 cut(s) 56, 309, 425, 541
Van91I CCANNNNNTGG 1 cut(s) 51
VneI GTGCAC 1 cut(s) 586
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 360
XhoI CTCGAG 1 cut(s) 236
XspI CTAG 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.