Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002093

Physical Location & Seq

Genomic Coordinates Forward (+)

87233374 .. 87235743

Gene Structure 2370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54188

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAATAAGTGGGTTCAGATTAGCGGTGGGCCCAAAACGGAGAAGTACTGGAGTACTAGAGTTACTACGTCGTCTTCACCAAATTCTGAAACAGCCAAAATGATGGAACATCACTTTGTGTACAAAGACTTGGACGGAGCGTCGACGCAGTGGGACGATATACAGGCAAAGCTAGAGAATATTCGGAAGAAGCCACCGGTGTTCTATCAGCCAGCTTTCACTCCTTCGGAGGACGAAGCCTCTCTTCCTGAAGACAAGAAGTGGATCGAGCGAGCAGGACCTCGAAGATCTCGAAGACGATCCCGATCTCGACGACGATCGATTCCTCGAGGAATACAGGTTGCGAGGTTTGGATCGGTGGTTCGTATTTCACGATCAGATTTTGTGCGTGAGGTTTCGCAGGCTCCGCCTGAAGTTTGGGTGGTTGTGATTCTCTACAAAGAAGGAATTGCAGAGTGCGGGTTGTTGAAGCAGTGTTTGGAAGATCTGGCAACCAATCTTATAGTGTACAACAGTGGCGCTGTGAAAGCCAATCACGTTGGGTTGCGCAGCTTTGGTCGGAAATGCACTTCTGAAGATCCCGTACTTGGTAATAGGCAAAGTAGTCATGGTCGATCAAGGGAAGCTGTGATCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin

Protein Analysis

212

Amino Acids

24.07

Weight (kDa)

9.79

Isoelectric Point (pI)

74.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14240
fragaria_vesca	FvH4_6g20890 FvH4_6g20890 FvH4_6g20890
malus_domestica	MD09G1015300.v1.1 MD17G1015400.v1.1
prunus_persica	Prupe.3G302500_v2.0.a1 Prupe.6G027300_v2.0.a1 Prupe.6G027300_v2.0.a1
pyrus_communis	pycom111g01240 pycom17g01260
rosa_chinensis	RchiOBHm_Chr1g0359641 RchiOBHm_Chr1g0359651 RchiOBHm_Chr2g0174741 RchiOBHm_Chr3g0477231 RchiOBHm_Chr3g0477241 RchiOBHm_Chr6g0252661
rosa_laevigata	RLG00000023735 RLG00000035432
rosa_multiflora	Rmu_sc0030318.1_g000001 Rmu_ssc0000313.1_g000003
rosa_roxburghii	Rroxscaffold_6G00404300 Rroxscaffold_6G00404780
rosa_rugosa	Rorug02G0109900 Rorug03G0158900 Rorug05G0567300 Rorug07G0186500
rosa_samantha	Rh1AG466100 Rh2AG497000 Rh2AG660500 Rh2BG671300 Rh2CG483100 Rh3AG209500 Rh3BG242800 Rh3BG242900 Rh3CG237000 Rh3DG236100 Rh4AG255500 Rh4BG260900 Rh6BG064900 Rh7BG354100
rosa_wichuraiana	Rw0G000240 Rw0G021750 Rw2G054110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	327
Acc16I	TGCGCA	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	143
AciI	CCGC	3 cut(s)	24, 407, 459
AclWI	GGATC	4 cut(s)	272, 294, 361, 572
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	3 cut(s)	270, 432, 594
AdeI	CACNNNGTG	1 cut(s)	118
AfaI	GTAC	5 cut(s)	47, 55, 122, 509, 585
AfiI	CCNNNNNNNGG	1 cut(s)	587
AgeI	ACCGGT	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	469
AhdI	GACNNNNNGTC	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	461, 493
AloI	GAACNNNNNNTCC	2 cut(s)	345, 377
AluBI	AGCT	4 cut(s)	172, 215, 552, 626
AluI	AGCT	4 cut(s)	172, 215, 552, 626
AlwI	GGATC	4 cut(s)	272, 294, 361, 572
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	1 cut(s)	29
ApaI	GGGCCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	549
ApoI	RAATTY	1 cut(s)	82
AsiGI	ACCGGT	1 cut(s)	196
AspLEI	GCGC	2 cut(s)	521, 549
AspS9I	GGNCC	3 cut(s)	29, 30, 278
AsuHPI	GGTGA	1 cut(s)	69
AvaI	CYCGRG	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	33
BarI	GAAGNNNNNNTAC	2 cut(s)	567, 599
BbsI	GAAGAC	3 cut(s)	66, 258, 301
BbvI	GCAGC	1 cut(s)	561
BccI	CCATC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	57, 173
BfoI	RGCGCY	1 cut(s)	522
BglII	AGATCT	2 cut(s)	287, 484
BisI	GCNGC	1 cut(s)	550
BlsI	GCNGC	1 cut(s)	551
BmcAI	AGTACT	2 cut(s)	47, 55
Bme18I	GGWCC	1 cut(s)	278
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	327
BmgT120I	GGNCC	3 cut(s)	29, 30, 278
BmiI	GGNNCC	2 cut(s)	31, 405
BpiI	GAAGAC	3 cut(s)	66, 258, 301
BpmI	CTGGAG	1 cut(s)	70
Bsa29I	ATCGAT	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	304
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	53
Bse8I	GATNNNNATC	1 cut(s)	304
BseCI	ATCGAT	1 cut(s)	320
BseJI	GATNNNNATC	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseNI	ACTGG	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	561
Bsh1285I	CGRYCG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	31
BshTI	ACCGGT	1 cut(s)	196
BshVI	ATCGAT	1 cut(s)	320
BsiEI	CGRYCG	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	327
Bsp120I	GGGCCC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp1407I	TGTACA	2 cut(s)	120, 507
BspACI	CCGC	3 cut(s)	24, 407, 459
BspANI	GGCC	1 cut(s)	31
BspDI	ATCGAT	1 cut(s)	320
BspLI	GGNNCC	2 cut(s)	31, 405
BspPI	GGATC	4 cut(s)	272, 294, 361, 572
BsrFI	RCCGGY	1 cut(s)	196
BsrGI	TGTACA	2 cut(s)	120, 507
BsrI	ACTGG	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	515
Bst6I	CTCTTC	1 cut(s)	249
BstAUI	TGTACA	2 cut(s)	120, 507
BstC8I	GCNNGC	3 cut(s)	213, 273, 402
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	2 cut(s)	521, 549
BstMCI	CGRYCG	1 cut(s)	320
BstMWI	GCNNNNNNNGC	2 cut(s)	406, 527
BstSLI	GKGCMC	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	561
BstV2I	GAAGAC	3 cut(s)	66, 258, 301
BstX2I	RGATCY	3 cut(s)	287, 484, 577
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	3 cut(s)	287, 484, 577
Bsu15I	ATCGAT	1 cut(s)	320
BsuRI	GGCC	1 cut(s)	31
BsuTUI	ATCGAT	1 cut(s)	320
BtsI	GCAGTG	2 cut(s)	155, 479
BtsIMutI	CAGTG	3 cut(s)	155, 479, 520
Cac8I	GCNNGC	3 cut(s)	213, 273, 402
CfoI	GCGC	2 cut(s)	521, 549
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	3 cut(s)	29, 30, 278
ClaI	ATCGAT	1 cut(s)	320
CseI	GACGC	2 cut(s)	129, 154
Csp6I	GTAC	5 cut(s)	46, 54, 121, 508, 584
CspAI	ACCGGT	1 cut(s)	196
CviAII	CATG	1 cut(s)	608
CviQI	GTAC	5 cut(s)	46, 54, 121, 508, 584
DraIII	CACNNNGTG	1 cut(s)	118
DriI	GACNNNNNGTC	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	249
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	249
EciI	GGCGGA	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	3 cut(s)	270, 432, 594
Eco88I	CYCGRG	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	33
FaeI	CATG	1 cut(s)	611
FaiI	YATR	3 cut(s)	161, 503, 609
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	1 cut(s)	607
FauI	CCCGC	1 cut(s)	452
FblI	GTMKAC	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	550
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	550
FspBI	CTAG	2 cut(s)	57, 173
FspI	TGCGCA	1 cut(s)	548
GlaI	GCGC	2 cut(s)	520, 548
GluI	GCNGC	1 cut(s)	550
GsuI	CTGGAG	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	522
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	2 cut(s)	129, 154
HhaI	GCGC	2 cut(s)	521, 549
Hin1II	CATG	1 cut(s)	611
Hin6I	GCGC	2 cut(s)	519, 547
HinP1I	GCGC	2 cut(s)	519, 547
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	2 cut(s)	322, 430
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	3 cut(s)	121, 144, 508
Hpy188I	TCNGA	7 cut(s)	18, 88, 186, 229, 379, 561, 574
Hpy188III	TCNNGA	5 cut(s)	248, 291, 303, 309, 372
Hpy8I	GTNNAC	3 cut(s)	121, 144, 508
Hpy99I	CGWCG	5 cut(s)	73, 145, 148, 315, 318
HpyAV	CCTTC	2 cut(s)	234, 437
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4IV	ACGT	2 cut(s)	68, 537
HpyCH4V	TGCA	2 cut(s)	452, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	406, 527
HpySE526I	ACGT	2 cut(s)	68, 537
Hsp92II	CATG	1 cut(s)	611
HspAI	GCGC	2 cut(s)	519, 547
LmnI	GCTCC	2 cut(s)	137, 409
Lsp1109I	GCAGC	1 cut(s)	561
MaeI	CTAG	2 cut(s)	57, 173
MaeII	ACGT	2 cut(s)	68, 537
MaeIII	GTNAC	1 cut(s)	61
MboII	GAAGA	8 cut(s)	66, 199, 236, 263, 297, 306, 494, 587
MflI	RGATCY	3 cut(s)	287, 484, 577
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	2 cut(s)	82, 447
MmeI	TCCRAC	1 cut(s)	539
MnlI	CCTC	7 cut(s)	223, 250, 291, 323, 336, 339, 385
MspI	CCGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	406, 527
NlaIII	CATG	1 cut(s)	611
NlaIV	GGNNCC	2 cut(s)	31, 405
NsbI	TGCGCA	1 cut(s)	548
PaeR7I	CTCGAG	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	2 cut(s)	289, 370
PfeI	GAWTC	2 cut(s)	322, 430
PinAI	ACCGGT	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	551
Ple19I	CGATCG	1 cut(s)	320
PpuMI	RGGWCCY	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	31, 405
PspOMI	GGGCCC	1 cut(s)	29
PspPI	GGNCC	3 cut(s)	29, 30, 278
PspPPI	RGGWCCY	1 cut(s)	278
PspXI	VCTCGAGB	1 cut(s)	327
PsuI	RGATCY	3 cut(s)	287, 484, 577
PvuI	CGATCG	1 cut(s)	320
RsaI	GTAC	5 cut(s)	47, 55, 122, 509, 585
RsaNI	GTAC	5 cut(s)	46, 54, 121, 508, 584
SalI	GTCGAC	1 cut(s)	142
SatI	GCNGC	1 cut(s)	550
Sau96I	GGNCC	3 cut(s)	29, 30, 278
ScaI	AGTACT	2 cut(s)	47, 55
SduI	GDGCHC	1 cut(s)	33
Sfr274I	CTCGAG	1 cut(s)	327
SgrAI	CRCCGGYG	1 cut(s)	196
SgrDI	CGTCGACG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	2 cut(s)	82, 447
SsiI	CCGC	3 cut(s)	24, 407, 459
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	2 cut(s)	57, 173
TaaI	ACNGT	1 cut(s)	515
TaiI	ACGT	2 cut(s)	71, 540
TaqI	TCGA	9 cut(s)	143, 267, 283, 292, 310, 320, 328, 613, 633
TasI	AATT	2 cut(s)	82, 447
TatI	WGTACW	4 cut(s)	45, 53, 120, 507
TfiI	GAWTC	2 cut(s)	322, 430
TscAI	CASTG	3 cut(s)	155, 479, 520
TseI	GCWGC	1 cut(s)	549
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	53, 150
TspRI	CASTG	3 cut(s)	155, 479, 520
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	143
XspI	CTAG	2 cut(s)	57, 173
ZrmI	AGTACT	2 cut(s)	47, 55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.