Rorug07G0186500

Phosducin-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002093
Physical Location & Seq
Forward (+)
15708286 .. 15711774
3489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0186500.1

Sequence Viewer

Length: 909 bp
ATGCTGCCGTACCAGACCATCTCGGAGGCGGCCTCCGCCCTCGGCAGGAACCTCACCTTCGCCGAGACCCTCTGGTTCAACTACTCCGCCTCCAAGTCCGACTACATCCTCTACTGCCACAACATTCTCTTCCTCTTCCTCATCTTCTCCGTCGTCCCTCTCCCCCTCGTCTTCGTCGAGGTCCTCCGATGGGCCGGGTTCGACCGCCACAAGATCCAGCCCAAGGTCCGATTGACCCTCCATGACATGCTCAAGTGCTACAAGGACGTCATGTGGATGTTCTTCTCCATCGTCGGCCCTCTCCAGCTCGTCTCTTACCCTTCTATTCAGCTTATAGGGATTCGAACAGGATTGCCATTGCCTTCTGGGTGGGAGATGGTTTCCCAATTGTTAGTTTATTTCTTGGTTGAAGATTACACCAACTACTGGATCCACAGATTTCTGCATAACAAATGGGGGTATGACAAGATCCATCGTGTTCATCACGAATACACTGCTCCGATTGGATTTGCGGCGCCATATGCGCACTGGGCTGAGATTTTGATTCTCGGGATCCCATCTTTTCTCGGGCCAGCCATAGCGCCTGGCCACATGATCACATTCTGGTCGTGGATAGCATTGAGGCAGGTTGAGGCCATTGAAACACACAGCGGGTATGACTTCCCCTGGACTCCCACAAAATATATTCCATTTTATGGTGGTGCTGAGTATCATGATTACCATCATTATGTTGGAGGACTAAGCCAGAGCAATTTTGCTTCAGTTTTCACCTACTGCGATTACATTTATGGGACTGACAAGGGATATCGTTACCAGAAGAAGATCCTTAAAAAGTTGAAAGAGGATACTAATGGTGTGCAAAATGGAGGGTCGTACAACACCTCAACTGTAGACCTTAAAACTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phosducin

Protein Analysis

302

Amino Acids

35.0

Weight (kDa)

7.24

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_hydroxylase PF04116 131 - 265 1.3e-26 Fatty acid hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
Acc16I TGCGCA 1 cut(s) 525
Acc36I ACCTGC 1 cut(s) 616
AccB1I GGYRCC 1 cut(s) 514
AccB7I CCANNNNNTGG 2 cut(s) 426, 695
AccI GTMKAC 1 cut(s) 891
AciI CCGC 6 cut(s) 29, 36, 87, 205, 512, 651
AclWI GGATC 7 cut(s) 208, 424, 437, 463, 547, 560, 817
AcoI YGGCCR 1 cut(s) 586
AcuI CTGAAG 1 cut(s) 744
AcyI GRCGYC 2 cut(s) 267, 515
AfaI GTAC 2 cut(s) 11, 875
AfiI CCNNNNNNNGG 5 cut(s) 45, 190, 223, 426, 695
AgsI TTSAA 4 cut(s) 79, 410, 641, 838
AjnI CCWGG 2 cut(s) 583, 665
AluBI AGCT 2 cut(s) 307, 331
AluI AGCT 2 cut(s) 307, 331
Alw26I GTCTC 2 cut(s) 59, 316
AlwI GGATC 7 cut(s) 208, 424, 437, 463, 547, 560, 817
Ama87I CYCGRG 2 cut(s) 548, 566
AoxI GGCC 6 cut(s) 30, 192, 295, 569, 586, 633
ApeKI GCWGC 1 cut(s) 4
AspLEI GCGC 3 cut(s) 517, 526, 583
AspS9I GGNCC 5 cut(s) 181, 192, 226, 296, 569
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 46, 760
AsuII TTCGAA 1 cut(s) 343
AvaI CYCGRG 2 cut(s) 548, 566
AvaII GGWCC 2 cut(s) 181, 226
BalI TGGCCA 1 cut(s) 588
BamHI GGATCC 2 cut(s) 429, 552
BanI GGYRCC 1 cut(s) 514
BbsI GAAGAC 1 cut(s) 163
BccI CCATC 7 cut(s) 26, 183, 296, 370, 480, 565, 729
BcgI CGANNNNNNTGC 2 cut(s) 476, 510
BciT130I CCWGG 2 cut(s) 585, 667
BciVI GTATCC 1 cut(s) 838
BclI TGATCA 1 cut(s) 594
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 59, 316
BfmI CTRYAG 1 cut(s) 888
BfoI RGCGCY 2 cut(s) 518, 584
BfuAI ACCTGC 1 cut(s) 616
BfuI GTATCC 1 cut(s) 838
BisI GCNGC 3 cut(s) 5, 30, 513
BlsI GCNGC 3 cut(s) 6, 31, 514
Bme1390I CCNGG 3 cut(s) 196, 585, 667
Bme18I GGWCC 2 cut(s) 181, 226
BmeT110I CYCGRG 2 cut(s) 548, 566
BmgT120I GGNCC 5 cut(s) 181, 192, 226, 296, 569
BmiI GGNNCC 4 cut(s) 50, 431, 516, 554
BmrFI CCNGG 3 cut(s) 196, 585, 667
BmrI ACTGGG 1 cut(s) 538
BmuI ACTGGG 1 cut(s) 538
BpiI GAAGAC 1 cut(s) 163
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BpmI CTGGAG 1 cut(s) 287
Bpu14I TTCGAA 1 cut(s) 343
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 196
BsaBI GATNNNNATC 1 cut(s) 720
BsaHI GRCGYC 2 cut(s) 267, 515
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 3 cut(s) 40, 222, 665
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 5 cut(s) 45, 190, 223, 426, 695
Bse1I ACTGG 2 cut(s) 431, 533
Bse3DI GCAATG 1 cut(s) 356
Bse8I GATNNNNATC 1 cut(s) 720
BseBI CCWGG 2 cut(s) 585, 667
BseDI CCNNGG 3 cut(s) 40, 222, 665
BseGI GGATG 2 cut(s) 105, 282
BseJI GATNNNNATC 1 cut(s) 720
BseLI CCNNNNNNNGG 5 cut(s) 45, 190, 223, 426, 695
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 2 cut(s) 525, 696
BseNI ACTGG 2 cut(s) 431, 533
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 6 cut(s) 32, 194, 297, 571, 588, 635
BshNI GGYRCC 1 cut(s) 514
BsiEI CGRYCG 1 cut(s) 205
BsiHKCI CYCGRG 2 cut(s) 548, 566
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 2 cut(s) 140, 805
BslI CCNNNNNNNGG 5 cut(s) 45, 190, 223, 426, 695
BsmAI GTCTC 2 cut(s) 59, 316
BsmBI CGTCTC 1 cut(s) 316
BsmFI GGGAC 2 cut(s) 140, 805
BsnI GGCC 6 cut(s) 32, 194, 297, 571, 588, 635
Bso31I GGTCTC 1 cut(s) 59
BsoBI CYCGRG 2 cut(s) 548, 566
Bsp119I TTCGAA 1 cut(s) 343
Bsp143I GATC 6 cut(s) 213, 429, 468, 552, 594, 822
BspACI CCGC 6 cut(s) 29, 36, 87, 205, 512, 651
BspANI GGCC 6 cut(s) 32, 194, 297, 571, 588, 635
BspCNI CTCAG 2 cut(s) 526, 697
BspHI TCATGA 1 cut(s) 712
BspLI GGNNCC 4 cut(s) 50, 431, 516, 554
BspMI ACCTGC 1 cut(s) 616
BspPI GGATC 7 cut(s) 208, 424, 437, 463, 547, 560, 817
BspT104I TTCGAA 1 cut(s) 343
BspT107I GGYRCC 1 cut(s) 514
BspTNI GGTCTC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 356
BsrI ACTGG 2 cut(s) 431, 533
BssECI CCNNGG 3 cut(s) 40, 222, 665
BssMI GATC 6 cut(s) 213, 429, 468, 552, 594, 822
BssNI GRCGYC 2 cut(s) 267, 515
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 585, 667
Bst4CI ACNGT 1 cut(s) 889
Bst6I CTCTTC 2 cut(s) 134, 140
BstACI GRCGYC 2 cut(s) 267, 515
BstBI TTCGAA 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 3 cut(s) 534, 705, 740
BstF5I GGATG 2 cut(s) 105, 282
BstH2I RGCGCY 2 cut(s) 518, 584
BstHHI GCGC 3 cut(s) 517, 526, 583
BstKTI GATC 6 cut(s) 216, 432, 471, 555, 597, 825
BstMAI GTCTC 2 cut(s) 59, 316
BstMBI GATC 6 cut(s) 213, 429, 468, 552, 594, 822
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 4 cut(s) 35, 521, 523, 530
BstNI CCWGG 2 cut(s) 585, 667
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 3 cut(s) 194, 583, 665
BstSFI CTRYAG 1 cut(s) 888
BstV2I GAAGAC 1 cut(s) 163
BstX2I RGATCY 5 cut(s) 213, 429, 468, 552, 822
BstYI RGATCY 5 cut(s) 213, 429, 468, 552, 822
BsuI GTATCC 1 cut(s) 838
BsuRI GGCC 6 cut(s) 32, 194, 297, 571, 588, 635
BtsCI GGATG 2 cut(s) 105, 282
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 2 cut(s) 492, 526
BveI ACCTGC 1 cut(s) 616
Cac8I GCNNGC 1 cut(s) 573
CciI TCATGA 1 cut(s) 712
CfoI GCGC 3 cut(s) 517, 526, 583
Cfr13I GGNCC 5 cut(s) 181, 192, 226, 296, 569
Csp6I GTAC 2 cut(s) 10, 874
CviAII CATG 5 cut(s) 242, 247, 271, 592, 713
CviQI GTAC 2 cut(s) 10, 874
DdeI CTNAG 3 cut(s) 534, 705, 740
DinI GGCGCC 1 cut(s) 516
DpnI GATC 6 cut(s) 215, 431, 470, 554, 596, 824
DpnII GATC 6 cut(s) 213, 429, 468, 552, 594, 822
EaeI YGGCCR 1 cut(s) 586
Eam1104I CTCTTC 2 cut(s) 134, 140
EarI CTCTTC 2 cut(s) 134, 140
EciI GGCGGA 2 cut(s) 25, 76
Eco130I CCWWGG 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 59
Eco32I GATATC 1 cut(s) 806
Eco47I GGWCC 2 cut(s) 181, 226
Eco57I CTGAAG 1 cut(s) 744
Eco88I CYCGRG 2 cut(s) 548, 566
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 2 cut(s) 583, 665
EcoRV GATATC 1 cut(s) 806
EcoT14I CCWWGG 1 cut(s) 222
EgeI GGCGCC 1 cut(s) 516
EheI GGCGCC 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 316
FaeI CATG 5 cut(s) 245, 250, 274, 595, 716
FaqI GGGAC 2 cut(s) 140, 805
FatI CATG 5 cut(s) 241, 246, 270, 591, 712
FauI CCCGC 1 cut(s) 644
FauNDI CATATG 1 cut(s) 520
FbaI TGATCA 1 cut(s) 594
FblI GTMKAC 1 cut(s) 891
Fnu4HI GCNGC 3 cut(s) 5, 30, 513
FokI GGATG 2 cut(s) 92, 289
Fsp4HI GCNGC 3 cut(s) 5, 30, 513
FspAI RTGCGCAY 1 cut(s) 525
FspI TGCGCA 1 cut(s) 525
GlaI GCGC 3 cut(s) 516, 525, 582
GluI GCNGC 3 cut(s) 5, 30, 513
GsuI CTGGAG 1 cut(s) 287
HaeII RGCGCY 2 cut(s) 518, 584
HaeIII GGCC 6 cut(s) 32, 194, 297, 571, 588, 635
HapII CCGG 1 cut(s) 195
HhaI GCGC 3 cut(s) 517, 526, 583
Hin1I GRCGYC 2 cut(s) 267, 515
Hin1II CATG 5 cut(s) 245, 250, 274, 595, 716
Hin6I GCGC 3 cut(s) 515, 524, 581
HinP1I GCGC 3 cut(s) 515, 524, 581
HinfI GANTC 3 cut(s) 340, 544, 670
HpaII CCGG 1 cut(s) 195
HphI GGTGA 2 cut(s) 46, 760
Hpy166II GTNNAC 1 cut(s) 892
Hpy188I TCNGA 5 cut(s) 25, 100, 188, 230, 501
Hpy188III TCNNGA 3 cut(s) 485, 550, 713
Hpy8I GTNNAC 1 cut(s) 892
Hpy99I CGWCG 3 cut(s) 155, 179, 296
HpyAV CCTTC 3 cut(s) 67, 330, 372
HpyCH4III ACNGT 1 cut(s) 889
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 2 cut(s) 445, 859
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 521, 523, 530
HpyF3I CTNAG 3 cut(s) 534, 705, 740
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 2 cut(s) 267, 515
Hsp92II CATG 5 cut(s) 245, 250, 274, 595, 716
HspAI GCGC 3 cut(s) 515, 524, 581
KasI GGCGCC 1 cut(s) 514
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 6 cut(s) 213, 429, 468, 552, 594, 822
LmnI GCTCC 1 cut(s) 502
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 809
MalI GATC 6 cut(s) 215, 431, 470, 554, 596, 824
MboI GATC 6 cut(s) 213, 429, 468, 552, 594, 822
MboII GAAGA 8 cut(s) 121, 127, 136, 163, 274, 422, 829, 832
MfeI CAATTG 1 cut(s) 386
MflI RGATCY 5 cut(s) 213, 429, 468, 552, 822
MlsI TGGCCA 1 cut(s) 588
MluCI AATT 2 cut(s) 386, 751
MluNI TGGCCA 1 cut(s) 588
Mly113I GGCGCC 1 cut(s) 515
MlyI GAGTC 1 cut(s) 664
MmeI TCCRAC 2 cut(s) 123, 712
Mox20I TGGCCA 1 cut(s) 588
MscI TGGCCA 1 cut(s) 588
MseI TTAA 2 cut(s) 828, 897
MslI CAYNNNNRTG 2 cut(s) 275, 726
Msp20I TGGCCA 1 cut(s) 588
MspA1I CMGCKG 1 cut(s) 651
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 3 cut(s) 196, 585, 667
MunI CAATTG 1 cut(s) 386
MvaI CCWGG 2 cut(s) 585, 667
MwoI GCNNNNNNNGC 4 cut(s) 35, 521, 523, 530
NarI GGCGCC 1 cut(s) 515
NciI CCSGG 1 cut(s) 196
NdeI CATATG 1 cut(s) 520
NdeII GATC 6 cut(s) 213, 429, 468, 552, 594, 822
NlaIII CATG 5 cut(s) 245, 250, 274, 595, 716
NlaIV GGNNCC 4 cut(s) 50, 431, 516, 554
NmeAIII GCCGAG 2 cut(s) 21, 88
NsbI TGCGCA 1 cut(s) 525
NspI RCATGY 1 cut(s) 250
NspV TTCGAA 1 cut(s) 343
PagI TCATGA 1 cut(s) 712
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 2 cut(s) 340, 544
PflMI CCANNNNNTGG 2 cut(s) 426, 695
PkrI GCNGC 3 cut(s) 6, 31, 514
PleI GAGTC 1 cut(s) 664
PluTI GGCGCC 1 cut(s) 518
PpsI GAGTC 1 cut(s) 664
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 583, 665
PspGI CCWGG 2 cut(s) 583, 665
PspN4I GGNNCC 4 cut(s) 50, 431, 516, 554
PspPI GGNCC 5 cut(s) 181, 192, 226, 296, 569
PspPPI RGGWCCY 1 cut(s) 181
PsuI RGATCY 5 cut(s) 213, 429, 468, 552, 822
RsaI GTAC 2 cut(s) 11, 875
RsaNI GTAC 2 cut(s) 10, 874
RseI CAYNNNNRTG 2 cut(s) 275, 726
SaqAI TTAA 2 cut(s) 828, 897
SatI GCNGC 3 cut(s) 5, 30, 513
Sau3AI GATC 6 cut(s) 213, 429, 468, 552, 594, 822
Sau96I GGNCC 5 cut(s) 181, 192, 226, 296, 569
SchI GAGTC 1 cut(s) 664
ScrFI CCNGG 3 cut(s) 196, 585, 667
SfcI CTRYAG 1 cut(s) 888
SfoI GGCGCC 1 cut(s) 516
SfuI TTCGAA 1 cut(s) 343
SinI GGWCC 2 cut(s) 181, 226
SmiMI CAYNNNNRTG 2 cut(s) 275, 726
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 2 cut(s) 386, 751
SsiI CCGC 6 cut(s) 29, 36, 87, 205, 512, 651
SspDI GGCGCC 1 cut(s) 514
StyD4I CCNGG 3 cut(s) 194, 583, 665
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 889
TaiI ACGT 1 cut(s) 270
TaqI TCGA 3 cut(s) 177, 201, 343
TasI AATT 2 cut(s) 386, 751
TauI GCSGC 2 cut(s) 32, 515
TfiI GAWTC 2 cut(s) 340, 544
Tru1I TTAA 2 cut(s) 828, 897
Tru9I TTAA 2 cut(s) 828, 897
TscAI CASTG 2 cut(s) 499, 533
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 470
TspGWI ACGGA 1 cut(s) 139
TspRI CASTG 2 cut(s) 499, 533
Van91I CCANNNNNTGG 2 cut(s) 426, 695
VpaK11BI GGWCC 2 cut(s) 181, 226
XceI RCATGY 1 cut(s) 250
XcmI CCANNNNNNNNNTGG 2 cut(s) 525, 728
XmiI GTMKAC 1 cut(s) 891
ZraI GACGTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.