Rh3BG242900

Phosducin-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002093
Physical Location & Seq
Reverse (-)
22909878 .. 22912050
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG242900.1

Sequence Viewer

Length: 708 bp
ATGGGGGACTATCACTATATCTACAAGGACTTGGACGGAGCCTCCACCCAGTGGGACGATATTCAGGCAAAGCTCGGCAATCTTCCGCCGAAGAAGCCGGCGTTTAAGCCTCCGCCCTTCACTCCGGCCGAGGACGAAGCCTCTCTTCCCAAAGACAAGTCTTGGATCGATGACAAGACCGAGCAGGACCTCGAAGATCTCGAAGACGATCCCGATCTCGACGACGATCGCTTCCTCGAGGAATACAGGAGGAAGAGGCTGTCGGAATTGAGAGAAGCAGCCAAGGTTGCAAGGTTTGGGTCAGTGGTTCCGATTTCGGGATCAGATTTTGTGCGCGAGGTTTCGCAAGCTCCACCTGACGTTTGGGTGGTGGTGATTCTCTACAAAGAAGGAATTGCAGAGTGTGGATTGTTGATGCAGTGTCTGGAGGATTTGGCAACCAAGTACCCAGCAACCAAATTTGTGAAAATAATATCCACAGACTGCATTCCTAACTACCCGGATCGTAATCTTCCCACTCTTTTAGTGTACAACAGTGGCGCTGTCAAGGCCAATCACGTTGGGTTGCGCAGCTTTGGTAGGAGGTGCACACCTGAAGGTAGCTTTCTCCTTTTGAATGCCGCTCTGATTTTGTTATTTCCTTTGCATCTGGACAGCTTGATAGGTCTTTTCGACTCAAAAAAGTACGAAAGAATAAAAAGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phosducin

Protein Analysis

235

Amino Acids

26.64

Weight (kDa)

5.04

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phosducin PF02114 70 - 188 2.5e-15 Phosducin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 236
Acc16I TGCGCA 1 cut(s) 569
AccB7I CCANNNNNTGG 1 cut(s) 51
AccBSI CCGCTC 1 cut(s) 623
AccII CGCG 1 cut(s) 336
AciI CCGC 3 cut(s) 86, 113, 621
AclWI GGATC 4 cut(s) 173, 203, 328, 510
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 615
AdeI CACNNNGTG 1 cut(s) 51
AfaI GTAC 3 cut(s) 446, 530, 686
AfiI CCNNNNNNNGG 2 cut(s) 51, 317
AgsI TTSAA 1 cut(s) 616
AluBI AGCT 5 cut(s) 73, 350, 573, 603, 657
AluI AGCT 5 cut(s) 73, 350, 573, 603, 657
Alw21I GWGCWC 1 cut(s) 590
Alw44I GTGCAC 1 cut(s) 586
AlwI GGATC 4 cut(s) 173, 203, 328, 510
AlwNI CAGNNNCTG 1 cut(s) 424
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 2 cut(s) 126, 549
ApaLI GTGCAC 1 cut(s) 586
ApeKI GCWGC 2 cut(s) 278, 570
ApoI RAATTY 1 cut(s) 458
AspLEI GCGC 3 cut(s) 336, 542, 570
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 385
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 590
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 590
BbvI GCAGC 2 cut(s) 290, 582
BcnI CCSGG 1 cut(s) 500
BfoI RGCGCY 1 cut(s) 543
BglII AGATCT 1 cut(s) 196
BisI GCNGC 3 cut(s) 279, 571, 621
BlsI GCNGC 3 cut(s) 280, 572, 622
Bme1390I CCNGG 1 cut(s) 500
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 40, 309
BmrFI CCNGG 1 cut(s) 500
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 2 cut(s) 405, 655
BmuI ACTGGG 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 446
BpuMI CCSGG 1 cut(s) 500
Bsa29I ATCGAT 1 cut(s) 168
BsaBI GATNNNNATC 2 cut(s) 213, 507
BsaJI CCNNGG 2 cut(s) 129, 282
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 317
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 49
Bse8I GATNNNNATC 2 cut(s) 213, 507
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 129, 282
BseJI GATNNNNATC 2 cut(s) 213, 507
BseLI CCNNNNNNNGG 2 cut(s) 51, 317
BseNI ACTGG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 590
BseX3I CGGCCG 1 cut(s) 126
BseXI GCAGC 2 cut(s) 290, 582
BseYI CCCAGC 1 cut(s) 448
Bsh1236I CGCG 1 cut(s) 336
Bsh1285I CGRYCG 2 cut(s) 129, 229
BshFI GGCC 2 cut(s) 128, 551
BshVI ATCGAT 1 cut(s) 168
BsiEI CGRYCG 2 cut(s) 129, 229
BsiHKAI GWGCWC 1 cut(s) 590
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 3 cut(s) 98, 125, 500
BslFI GGGAC 2 cut(s) 20, 68
BslI CCNNNNNNNGG 2 cut(s) 51, 317
BsmFI GGGAC 2 cut(s) 20, 68
BsmI GAATGC 2 cut(s) 486, 622
BsnI GGCC 2 cut(s) 128, 551
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 590
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 7 cut(s) 165, 196, 208, 214, 226, 320, 502
BspACI CCGC 3 cut(s) 86, 113, 621
BspANI GGCC 2 cut(s) 128, 551
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 40, 309
BspPI GGATC 4 cut(s) 173, 203, 328, 510
BsrBI CCGCTC 1 cut(s) 623
BsrFI RCCGGY 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 129, 282
BssMI GATC 7 cut(s) 165, 196, 208, 214, 226, 320, 502
BssT1I CCWWGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 536
Bst6I CTCTTC 2 cut(s) 150, 248
BstAUI TGTACA 1 cut(s) 528
BstC8I GCNNGC 2 cut(s) 99, 348
BstFNI CGCG 1 cut(s) 336
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 3 cut(s) 336, 542, 570
BstKTI GATC 7 cut(s) 168, 199, 211, 217, 229, 323, 505
BstMBI GATC 7 cut(s) 165, 196, 208, 214, 226, 320, 502
BstMCI CGRYCG 2 cut(s) 129, 229
BstMWI GCNNNNNNNGC 3 cut(s) 94, 287, 548
BstSCI CCNGG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 590
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 290, 582
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BstZI CGGCCG 1 cut(s) 126
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 2 cut(s) 128, 551
BsuTUI ATCGAT 1 cut(s) 168
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 4 cut(s) 56, 309, 425, 541
Cac8I GCNNGC 2 cut(s) 99, 348
CaiI CAGNNNCTG 1 cut(s) 424
CfoI GCGC 3 cut(s) 336, 542, 570
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 187
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 3 cut(s) 445, 529, 685
CviQI GTAC 3 cut(s) 445, 529, 685
DpnI GATC 7 cut(s) 167, 198, 210, 216, 228, 322, 504
DpnII GATC 7 cut(s) 165, 196, 208, 214, 226, 320, 502
DraIII CACNNNGTG 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 126
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 2 cut(s) 150, 248
EarI CTCTTC 2 cut(s) 150, 248
EciI GGCGGA 2 cut(s) 75, 102
EclXI CGGCCG 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 187
Eco52I CGGCCG 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 615
Eco88I CYCGRG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaiI YATR 1 cut(s) 18
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 2 cut(s) 20, 68
Fnu4HI GCNGC 3 cut(s) 279, 571, 621
Fsp4HI GCNGC 3 cut(s) 279, 571, 621
FspI TGCGCA 1 cut(s) 569
GlaI GCGC 3 cut(s) 335, 541, 569
GluI GCNGC 3 cut(s) 279, 571, 621
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 446
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 2 cut(s) 128, 551
HapII CCGG 3 cut(s) 98, 125, 500
HhaI GCGC 3 cut(s) 336, 542, 570
Hin6I GCGC 3 cut(s) 334, 540, 568
HinP1I GCGC 3 cut(s) 334, 540, 568
HinfI GANTC 2 cut(s) 376, 674
HpaII CCGG 3 cut(s) 98, 125, 500
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 2 cut(s) 529, 588
Hpy188I TCNGA 4 cut(s) 265, 312, 325, 627
Hpy188III TCNNGA 6 cut(s) 200, 212, 218, 318, 425, 650
Hpy8I GTNNAC 2 cut(s) 529, 588
Hpy99I CGWCG 2 cut(s) 224, 227
HpyAV CCTTC 3 cut(s) 127, 383, 590
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4IV ACGT 2 cut(s) 360, 558
HpyCH4V TGCA 6 cut(s) 290, 398, 418, 486, 588, 646
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 287, 548
HpySE526I ACGT 2 cut(s) 360, 558
HspAI GCGC 3 cut(s) 334, 540, 568
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
Kzo9I GATC 7 cut(s) 165, 196, 208, 214, 226, 320, 502
LmnI GCTCC 2 cut(s) 38, 355
Lsp1109I GCAGC 2 cut(s) 290, 582
LweI GCATC 2 cut(s) 405, 655
MaeII ACGT 2 cut(s) 360, 558
MalI GATC 7 cut(s) 167, 198, 210, 216, 228, 322, 504
MbiI CCGCTC 1 cut(s) 623
MboI GATC 7 cut(s) 165, 196, 208, 214, 226, 320, 502
MboII GAAGA 7 cut(s) 74, 103, 137, 206, 215, 265, 503
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 590
MluCI AATT 3 cut(s) 266, 393, 458
MlyI GAGTC 1 cut(s) 668
MmeI TCCRAC 1 cut(s) 243
MroNI GCCGGC 1 cut(s) 97
MseI TTAA 1 cut(s) 105
MspI CCGG 3 cut(s) 98, 125, 500
MspR9I CCNGG 1 cut(s) 500
Mva1269I GAATGC 2 cut(s) 486, 622
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 3 cut(s) 94, 287, 548
NaeI GCCGGC 1 cut(s) 99
NciI CCSGG 1 cut(s) 500
NdeII GATC 7 cut(s) 165, 196, 208, 214, 226, 320, 502
NgoMIV GCCGGC 1 cut(s) 97
NlaIV GGNNCC 2 cut(s) 40, 309
NmeAIII GCCGAG 2 cut(s) 54, 154
NsbI TGCGCA 1 cut(s) 569
PaeR7I CTCGAG 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 2 cut(s) 486, 622
PdiI GCCGGC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 376
PflMI CCANNNNNTGG 1 cut(s) 51
PkrI GCNGC 3 cut(s) 280, 572, 622
Ple19I CGATCG 1 cut(s) 229
PleI GAGTC 1 cut(s) 668
PpsI GAGTC 1 cut(s) 668
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 448
PspN4I GGNNCC 2 cut(s) 40, 309
PspPI GGNCC 1 cut(s) 187
PspPPI RGGWCCY 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 424
PsuI RGATCY 1 cut(s) 196
PvuI CGATCG 1 cut(s) 229
RsaI GTAC 3 cut(s) 446, 530, 686
RsaNI GTAC 3 cut(s) 445, 529, 685
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 3 cut(s) 279, 571, 621
Sau3AI GATC 7 cut(s) 165, 196, 208, 214, 226, 320, 502
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 1 cut(s) 668
ScrFI CCNGG 1 cut(s) 500
SduI GDGCHC 1 cut(s) 590
SfaNI GCATC 2 cut(s) 405, 655
Sfr274I CTCGAG 1 cut(s) 236
SinI GGWCC 1 cut(s) 187
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 3 cut(s) 266, 393, 458
SsiI CCGC 3 cut(s) 86, 113, 621
StyD4I CCNGG 1 cut(s) 498
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 536
TaiI ACGT 2 cut(s) 363, 561
TaqI TCGA 6 cut(s) 168, 192, 201, 219, 237, 672
TaqII GACCGA 1 cut(s) 194
TasI AATT 3 cut(s) 266, 393, 458
TatI WGTACW 1 cut(s) 528
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 4 cut(s) 56, 309, 425, 541
TseI GCWGC 2 cut(s) 278, 570
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 4 cut(s) 56, 309, 425, 541
Van91I CCANNNNNTGG 1 cut(s) 51
VneI GTGCAC 1 cut(s) 586
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 360
XhoI CTCGAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.