Rw0G021750

Phosducin-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01008
OG0002093
Physical Location & Seq
Forward (+)
77294 .. 79054
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G021750.1

Sequence Viewer

Length: 759 bp
ATGGGGGACTATCACTATATCTACAAGGACTTGGACGGAGCCTCCACGCAGTGGGACGATATTCAGGCAAAGCTCGGCAATCTTCCGCCGAAGAAGCCGGCGTTTAAGCCTCCGCCCTTCACTCCTGCCGAGGACGAAGCCTCTCTCCCTAAAGACAAGTGTTGGATCGATGACAAGACCGAGCAGGACCTCGAAGATCTCGAAGACGATCCCGATCTCGACGACGATCGCTTCCTCGAGGAATACAGGAGGAAGAGGCTGTCGGAATTGAGGGAAGCAGCCAAGGTTGCAAGGTTTGGGTCAGTGGTTCCGATTTCGGGATCAGATTTTGTGCGCGAGGTTTCGCAAGCTCCACCCGACGTTTGGGTGGTGGTGATTCTCTACAAAGAAGGAATTGCAGAGTGTGGATTGTTGATGCAGTGTCTGGAGGATTTGGCAACCAAGTACCCAGCAACCAAATTTGTGAAAATAATATCCACAGACTGCATTCCTAACTACCCGGATCGTAATCTTCCCACTCTTTTAGTGTACAACAGTGGCGCTGTCAAGGCCAATCACGTTGGGTTGCGCAGCTTTGGTAGGAGGTGCACACCTGAAGGTGTGGCATTAGTTCTCTGCCAATCAGATCCTGTACTTAATGATGGGCAGAGTGTTAGCGGTCGTTCAAGGGAAGCTGTGATCGAGGGAGTTCGCAAGAGGTTCATAGAGAAAGTTGTGACACAACATGAAGATAAGGACGATGGATATTCAAGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phosducin

Protein Analysis

252

Amino Acids

28.28

Weight (kDa)

4.8

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phosducin PF02114 70 - 187 3.3e-15 Phosducin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 236
Acc16I TGCGCA 1 cut(s) 569
AccB7I CCANNNNNTGG 1 cut(s) 51
AccII CGCG 1 cut(s) 336
AciI CCGC 3 cut(s) 86, 113, 657
AclWI GGATC 5 cut(s) 173, 203, 328, 510, 620
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 615
AdeI CACNNNGTG 1 cut(s) 51
AfaI GTAC 3 cut(s) 446, 530, 633
AfiI CCNNNNNNNGG 3 cut(s) 51, 317, 363
AgsI TTSAA 2 cut(s) 666, 750
AluBI AGCT 4 cut(s) 73, 350, 573, 674
AluI AGCT 4 cut(s) 73, 350, 573, 674
Alw21I GWGCWC 1 cut(s) 590
Alw44I GTGCAC 1 cut(s) 586
AlwI GGATC 5 cut(s) 173, 203, 328, 510, 620
AlwNI CAGNNNCTG 2 cut(s) 424, 629
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 1 cut(s) 549
ApaLI GTGCAC 1 cut(s) 586
ApeKI GCWGC 2 cut(s) 278, 570
ApoI RAATTY 1 cut(s) 458
AspLEI GCGC 3 cut(s) 336, 542, 570
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 385
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 590
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 590
BbvI GCAGC 2 cut(s) 290, 582
BccI CCATC 2 cut(s) 635, 734
BcnI CCSGG 1 cut(s) 500
BfoI RGCGCY 1 cut(s) 543
BglII AGATCT 1 cut(s) 196
BisI GCNGC 2 cut(s) 279, 571
BlsI GCNGC 2 cut(s) 280, 572
Bme1390I CCNGG 1 cut(s) 500
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 40, 309
BmrFI CCNGG 1 cut(s) 500
BmsI GCATC 1 cut(s) 405
BpiI GAAGAC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 446
BpuMI CCSGG 1 cut(s) 500
Bsa29I ATCGAT 1 cut(s) 168
BsaBI GATNNNNATC 2 cut(s) 213, 507
BsaJI CCNNGG 2 cut(s) 129, 282
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 317, 363
Bse118I RCCGGY 1 cut(s) 97
Bse8I GATNNNNATC 2 cut(s) 213, 507
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 129, 282
BseJI GATNNNNATC 2 cut(s) 213, 507
BseLI CCNNNNNNNGG 3 cut(s) 51, 317, 363
BseSI GKGCMC 1 cut(s) 590
BseXI GCAGC 2 cut(s) 290, 582
BseYI CCCAGC 1 cut(s) 448
Bsh1236I CGCG 1 cut(s) 336
Bsh1285I CGRYCG 2 cut(s) 229, 661
BshFI GGCC 1 cut(s) 551
BshVI ATCGAT 1 cut(s) 168
BsiEI CGRYCG 2 cut(s) 229, 661
BsiHKAI GWGCWC 1 cut(s) 590
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 2 cut(s) 98, 500
BslFI GGGAC 2 cut(s) 20, 68
BslI CCNNNNNNNGG 3 cut(s) 51, 317, 363
BsmFI GGGAC 2 cut(s) 20, 68
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 1 cut(s) 551
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 590
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 9 cut(s) 165, 196, 208, 214, 226, 320, 502, 625, 678
BspACI CCGC 3 cut(s) 86, 113, 657
BspANI GGCC 1 cut(s) 551
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 40, 309
BspPI GGATC 5 cut(s) 173, 203, 328, 510, 620
BsrFI RCCGGY 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 528
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 129, 282
BssMI GATC 9 cut(s) 165, 196, 208, 214, 226, 320, 502, 625, 678
BssT1I CCWWGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 536
Bst6I CTCTTC 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 528
BstC8I GCNNGC 2 cut(s) 99, 348
BstFNI CGCG 1 cut(s) 336
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 3 cut(s) 336, 542, 570
BstKTI GATC 9 cut(s) 168, 199, 211, 217, 229, 323, 505, 628, 681
BstMBI GATC 9 cut(s) 165, 196, 208, 214, 226, 320, 502, 625, 678
BstMCI CGRYCG 2 cut(s) 229, 661
BstMWI GCNNNNNNNGC 3 cut(s) 94, 287, 548
BstSCI CCNGG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 590
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 290, 582
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 2 cut(s) 196, 625
BstYI RGATCY 2 cut(s) 196, 625
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 1 cut(s) 551
BsuTUI ATCGAT 1 cut(s) 168
BtsI GCAGTG 2 cut(s) 56, 425
BtsIMutI CAGTG 4 cut(s) 56, 309, 425, 541
Cac8I GCNNGC 2 cut(s) 99, 348
CaiI CAGNNNCTG 2 cut(s) 424, 629
CfoI GCGC 3 cut(s) 336, 542, 570
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 187
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 3 cut(s) 445, 529, 632
CviAII CATG 1 cut(s) 725
CviQI GTAC 3 cut(s) 445, 529, 632
DpnI GATC 9 cut(s) 167, 198, 210, 216, 228, 322, 504, 627, 680
DpnII GATC 9 cut(s) 165, 196, 208, 214, 226, 320, 502, 625, 678
DraIII CACNNNGTG 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
EciI GGCGGA 2 cut(s) 75, 102
Eco130I CCWWGG 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 615
Eco88I CYCGRG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 1 cut(s) 728
FaiI YATR 3 cut(s) 18, 704, 726
FaqI GGGAC 2 cut(s) 20, 68
FatI CATG 1 cut(s) 724
Fnu4HI GCNGC 2 cut(s) 279, 571
Fsp4HI GCNGC 2 cut(s) 279, 571
FspI TGCGCA 1 cut(s) 569
GlaI GCGC 3 cut(s) 335, 541, 569
GluI GCNGC 2 cut(s) 279, 571
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 446
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 1 cut(s) 551
HapII CCGG 2 cut(s) 98, 500
HhaI GCGC 3 cut(s) 336, 542, 570
Hin1II CATG 1 cut(s) 728
Hin6I GCGC 3 cut(s) 334, 540, 568
HinP1I GCGC 3 cut(s) 334, 540, 568
HinfI GANTC 1 cut(s) 376
HpaII CCGG 2 cut(s) 98, 500
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 2 cut(s) 529, 588
Hpy188I TCNGA 4 cut(s) 265, 312, 325, 625
Hpy188III TCNNGA 5 cut(s) 200, 212, 218, 318, 425
Hpy8I GTNNAC 2 cut(s) 529, 588
Hpy99I CGWCG 3 cut(s) 224, 227, 362
HpyAV CCTTC 3 cut(s) 127, 383, 590
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4IV ACGT 2 cut(s) 360, 558
HpyCH4V TGCA 5 cut(s) 290, 398, 418, 486, 588
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 287, 548
HpySE526I ACGT 2 cut(s) 360, 558
Hsp92II CATG 1 cut(s) 728
HspAI GCGC 3 cut(s) 334, 540, 568
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
Kzo9I GATC 9 cut(s) 165, 196, 208, 214, 226, 320, 502, 625, 678
LmnI GCTCC 2 cut(s) 38, 355
Lsp1109I GCAGC 2 cut(s) 290, 582
LweI GCATC 1 cut(s) 405
MaeII ACGT 2 cut(s) 360, 558
MaeIII GTNAC 1 cut(s) 715
MalI GATC 9 cut(s) 167, 198, 210, 216, 228, 322, 504, 627, 680
MboI GATC 9 cut(s) 165, 196, 208, 214, 226, 320, 502, 625, 678
MboII GAAGA 7 cut(s) 74, 103, 206, 215, 265, 503, 740
MflI RGATCY 2 cut(s) 196, 625
MhlI GDGCHC 1 cut(s) 590
MluCI AATT 3 cut(s) 266, 393, 458
MmeI TCCRAC 2 cut(s) 143, 243
MroNI GCCGGC 1 cut(s) 97
MseI TTAA 2 cut(s) 105, 636
MspI CCGG 2 cut(s) 98, 500
MspR9I CCNGG 1 cut(s) 500
Mva1269I GAATGC 1 cut(s) 486
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 3 cut(s) 94, 287, 548
NaeI GCCGGC 1 cut(s) 99
NciI CCSGG 1 cut(s) 500
NdeII GATC 9 cut(s) 165, 196, 208, 214, 226, 320, 502, 625, 678
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 1 cut(s) 728
NlaIV GGNNCC 2 cut(s) 40, 309
NmeAIII GCCGAG 2 cut(s) 54, 154
NmuCI GTSAC 1 cut(s) 715
NsbI TGCGCA 1 cut(s) 569
PaeR7I CTCGAG 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 486
PdiI GCCGGC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 376
PflMI CCANNNNNTGG 1 cut(s) 51
PkrI GCNGC 2 cut(s) 280, 572
Ple19I CGATCG 1 cut(s) 229
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 448
PspN4I GGNNCC 2 cut(s) 40, 309
PspPI GGNCC 1 cut(s) 187
PspPPI RGGWCCY 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 236
PstNI CAGNNNCTG 2 cut(s) 424, 629
PsuI RGATCY 2 cut(s) 196, 625
PvuI CGATCG 1 cut(s) 229
RsaI GTAC 3 cut(s) 446, 530, 633
RsaNI GTAC 3 cut(s) 445, 529, 632
SaqAI TTAA 2 cut(s) 105, 636
SatI GCNGC 2 cut(s) 279, 571
Sau3AI GATC 9 cut(s) 165, 196, 208, 214, 226, 320, 502, 625, 678
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 500
SduI GDGCHC 1 cut(s) 590
SfaNI GCATC 1 cut(s) 405
Sfr274I CTCGAG 1 cut(s) 236
SinI GGWCC 1 cut(s) 187
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 3 cut(s) 266, 393, 458
SsiI CCGC 3 cut(s) 86, 113, 657
StyD4I CCNGG 1 cut(s) 498
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 536
TaiI ACGT 2 cut(s) 363, 561
TaqI TCGA 6 cut(s) 168, 192, 201, 219, 237, 681
TaqII GACCGA 1 cut(s) 194
TasI AATT 3 cut(s) 266, 393, 458
TatI WGTACW 2 cut(s) 528, 631
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 2 cut(s) 105, 636
Tru9I TTAA 2 cut(s) 105, 636
TscAI CASTG 4 cut(s) 56, 309, 425, 541
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 2 cut(s) 278, 570
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 2 cut(s) 691, 741
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 4 cut(s) 56, 309, 425, 541
Van91I CCANNNNNTGG 1 cut(s) 51
VneI GTGCAC 1 cut(s) 586
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 360
XhoI CTCGAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.