Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002093

Physical Location & Seq

Genomic Coordinates Forward (+)

10041928 .. 10042272

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG064900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCAGCGTCTGGAAGATTTGGCAACTAAGTACCCAGCAACCAAATTTGTGAAAATAATATCAACAGACTGCATTCCTAACTACCCGGATCGTAATCTTCCCACTCTTTTAGTGTACAACAGTGGCGCTGTCAAAGCCAATCACGTTGGGTTGCGCAGCTTTGGTCGGAGGTGCACACCTGAAGGTATGGCATTAGTTCTCTGTCAATCAGATCCTGTACTTAATGATGGGCAGAGTGTTAATGGTCGATCAAGGGAAGCTGTGATTAAGGGAGTTCGGAAAAGGTTCATAGAGAAAGTTGTGACACAACATGAAGATAAGGACGATGGATATTCAAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin

Protein Analysis

114

Amino Acids

12.71

Weight (kDa)

8.84

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14240
fragaria_vesca	FvH4_6g20890 FvH4_6g20890 FvH4_6g20890
malus_domestica	MD09G1015300.v1.1 MD17G1015400.v1.1
prunus_persica	Prupe.3G302500_v2.0.a1 Prupe.6G027300_v2.0.a1 Prupe.6G027300_v2.0.a1
pyrus_communis	pycom111g01240 pycom17g01260
rosa_chinensis	RchiOBHm_Chr1g0359641 RchiOBHm_Chr1g0359651 RchiOBHm_Chr2g0174741 RchiOBHm_Chr3g0477231 RchiOBHm_Chr3g0477241 RchiOBHm_Chr6g0252661
rosa_laevigata	RLG00000023735 RLG00000035432
rosa_multiflora	Rmu_sc0030318.1_g000001 Rmu_ssc0000313.1_g000003
rosa_roxburghii	Rroxscaffold_6G00404300 Rroxscaffold_6G00404780
rosa_rugosa	Rorug02G0109900 Rorug03G0158900 Rorug05G0567300 Rorug07G0186500
rosa_samantha	Rh1AG466100 Rh2AG497000 Rh2AG660500 Rh2BG671300 Rh2CG483100 Rh3AG209500 Rh3BG242800 Rh3BG242900 Rh3CG237000 Rh3DG236100 Rh4AG255500 Rh4BG260900 Rh6BG064900 Rh7BG354100
rosa_wichuraiana	Rw0G000240 Rw0G021750 Rw2G054110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	155
AclWI	GGATC	2 cut(s)	96, 206
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	3 cut(s)	32, 116, 219
AgsI	TTSAA	1 cut(s)	336
AluBI	AGCT	2 cut(s)	159, 260
AluI	AGCT	2 cut(s)	159, 260
Alw21I	GWGCWC	1 cut(s)	176
Alw44I	GTGCAC	1 cut(s)	172
AlwI	GGATC	2 cut(s)	96, 206
AlwNI	CAGNNNCTG	2 cut(s)	10, 215
ApaLI	GTGCAC	1 cut(s)	172
ApeKI	GCWGC	2 cut(s)	4, 156
ApoI	RAATTY	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	128, 156
AsuC2I	CCSGG	1 cut(s)	86
BaeGI	GKGCMC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	16, 168
BccI	CCATC	2 cut(s)	221, 320
BcnI	CCSGG	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	2 cut(s)	5, 157
BlsI	GCNGC	2 cut(s)	6, 158
Bme1390I	CCNGG	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	93
Bse8I	GATNNNNATC	1 cut(s)	93
BseJI	GATNNNNATC	1 cut(s)	93
BseSI	GKGCMC	1 cut(s)	176
BseXI	GCAGC	2 cut(s)	16, 168
BseYI	CCCAGC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	88, 211, 248
BspPI	GGATC	2 cut(s)	96, 206
BsrGI	TGTACA	1 cut(s)	114
BssMI	GATC	3 cut(s)	88, 211, 248
Bst4CI	ACNGT	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	128, 156
BstKTI	GATC	3 cut(s)	91, 214, 251
BstMBI	GATC	3 cut(s)	88, 211, 248
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	16, 168
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	127
CaiI	CAGNNNCTG	2 cut(s)	10, 215
CfoI	GCGC	2 cut(s)	128, 156
Csp6I	GTAC	3 cut(s)	31, 115, 218
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	3 cut(s)	137, 159, 260
CviKI_1	RGCY	3 cut(s)	137, 159, 260
CviQI	GTAC	3 cut(s)	31, 115, 218
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	3 cut(s)	90, 213, 250
DpnII	GATC	3 cut(s)	88, 211, 248
Eco57I	CTGAAG	1 cut(s)	201
FaeI	CATG	1 cut(s)	314
FaiI	YATR	3 cut(s)	188, 290, 312
FatI	CATG	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	5, 157
Fsp4HI	GCNGC	2 cut(s)	5, 157
FspI	TGCGCA	1 cut(s)	155
GlaI	GCGC	2 cut(s)	127, 155
GluI	GCNGC	2 cut(s)	5, 157
GsaI	CCCAGC	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	129
HapII	CCGG	1 cut(s)	86
HhaI	GCGC	2 cut(s)	128, 156
Hin1II	CATG	1 cut(s)	314
Hin6I	GCGC	2 cut(s)	126, 154
HinP1I	GCGC	2 cut(s)	126, 154
HpaII	CCGG	1 cut(s)	86
Hpy166II	GTNNAC	2 cut(s)	115, 174
Hpy188I	TCNGA	3 cut(s)	168, 211, 279
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	2 cut(s)	115, 174
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	3 cut(s)	4, 72, 174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	314
HspAI	GCGC	2 cut(s)	126, 154
Kzo9I	GATC	3 cut(s)	88, 211, 248
LpnPI	CCDG	4 cut(s)	48, 99, 192, 228
Lsp1109I	GCAGC	2 cut(s)	16, 168
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	3 cut(s)	90, 213, 250
MboI	GATC	3 cut(s)	88, 211, 248
MboII	GAAGA	3 cut(s)	26, 89, 326
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	1 cut(s)	162
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	4 cut(s)	222, 240, 267, 343
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	134
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	3 cut(s)	88, 211, 248
NlaIII	CATG	1 cut(s)	314
NmuCI	GTSAC	1 cut(s)	301
NsbI	TGCGCA	1 cut(s)	155
PctI	GAATGC	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	6, 158
PspFI	CCCAGC	1 cut(s)	34
PstNI	CAGNNNCTG	2 cut(s)	10, 215
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	3 cut(s)	32, 116, 219
RsaNI	GTAC	3 cut(s)	31, 115, 218
SaqAI	TTAA	4 cut(s)	222, 240, 267, 343
SatI	GCNGC	2 cut(s)	5, 157
Sau3AI	GATC	3 cut(s)	88, 211, 248
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	7 cut(s)	147, 161, 173, 181, 187, 262, 287
SgeI	CNNG	9 cut(s)	23, 47, 97, 98, 155, 191, 227, 264, 323
Sse9I	AATT	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	247
TasI	AATT	1 cut(s)	44
TatI	WGTACW	2 cut(s)	114, 217
Tru1I	TTAA	4 cut(s)	222, 240, 267, 343
Tru9I	TTAA	4 cut(s)	222, 240, 267, 343
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	2 cut(s)	4, 156
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	2 cut(s)	277, 327
TspRI	CASTG	1 cut(s)	127
VneI	GTGCAC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.