Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000313.1

Orthogroup ID

OG0002093

Physical Location & Seq

Genomic Coordinates Reverse (-)

14777 .. 18862

Gene Structure 4086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000313.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgatggaacatcactttgtgtacaaagacttggacggagcgtcgacgcagtgggacgatatacaggcaaagctagagaatattcggaagaagccaccggcgttctatccgccagctttcactccttcggaggacgaagcctctcttcctgaagacaagaagtggatcgagcgagcaggacctcgaagatctcgaagacgatcccgatctcgacgacgatcgattcctcgaggaatacaggctccgcctgaagtttgggtggttgtgattctctacaaagaaggaattgcagagtgcggaggcacagactgcattcctaactacctggattgtaaccttcccagtcttatagtgtacaacagtggcgctgtgaaagccaatcacgttgggttgcgcagctttggtcggaaatgcacttctgaagatcctgtacttggtaataggcaaagtggtcatggtcgatcaagggaagctgtgatcgaaagagttcgcaagagattcatggagaaagttgtgatacaacacgaagatcacgatgatggctactcaatgctggactacctggagatggggattggattaccaatttcgatttggtctaagttgacggattaccttaacaacttgaaccgaactgccaataaggccgccggctggctcaaaactttcttggctgaagctctatctgagccttcttttcctggaaggccggaaagagggacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin

Protein Analysis

241

Amino Acids

27.38

Weight (kDa)

9.0

Isoelectric Point (pI)

65.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14240
fragaria_vesca	FvH4_6g20890 FvH4_6g20890 FvH4_6g20890
malus_domestica	MD09G1015300.v1.1 MD17G1015400.v1.1
prunus_persica	Prupe.3G302500_v2.0.a1 Prupe.6G027300_v2.0.a1 Prupe.6G027300_v2.0.a1
pyrus_communis	pycom111g01240 pycom17g01260
rosa_chinensis	RchiOBHm_Chr1g0359641 RchiOBHm_Chr1g0359651 RchiOBHm_Chr2g0174741 RchiOBHm_Chr3g0477231 RchiOBHm_Chr3g0477241 RchiOBHm_Chr6g0252661
rosa_laevigata	RLG00000023735 RLG00000035432
rosa_multiflora	Rmu_sc0030318.1_g000001 Rmu_ssc0000313.1_g000003
rosa_roxburghii	Rroxscaffold_6G00404300 Rroxscaffold_6G00404780
rosa_rugosa	Rorug02G0109900 Rorug03G0158900 Rorug05G0567300 Rorug07G0186500
rosa_samantha	Rh1AG466100 Rh2AG497000 Rh2AG660500 Rh2BG671300 Rh2CG483100 Rh3AG209500 Rh3BG242800 Rh3BG242900 Rh3CG237000 Rh3DG236100 Rh4AG255500 Rh4BG260900 Rh6BG064900 Rh7BG354100
rosa_wichuraiana	Rw0G000240 Rw0G021750 Rw2G054110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	228
Acc16I	TGCGCA	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	44
AciI	CCGC	4 cut(s)	110, 245, 297, 648
AclWI	GGATC	3 cut(s)	173, 195, 419
AcuI	CTGAAG	4 cut(s)	171, 270, 441, 696
AdeI	CACNNNGTG	1 cut(s)	19
AfaI	GTAC	3 cut(s)	23, 356, 432
AfiI	CCNNNNNNNGG	4 cut(s)	434, 568, 654, 716
AgsI	TTSAA	1 cut(s)	628
AhdI	GACNNNNNGTC	1 cut(s)	40
AjnI	CCWGG	3 cut(s)	324, 561, 700
AluBI	AGCT	5 cut(s)	73, 116, 399, 473, 680
AluI	AGCT	5 cut(s)	73, 116, 399, 473, 680
AlwI	GGATC	3 cut(s)	173, 195, 419
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	2 cut(s)	645, 707
ApeKI	GCWGC	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	486
AspLEI	GCGC	2 cut(s)	368, 396
AspS9I	GGNCC	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	179
BarI	GAAGNNNNNNTAC	2 cut(s)	414, 446
BbsI	GAAGAC	2 cut(s)	159, 202
BbvI	GCAGC	1 cut(s)	408
BccI	CCATC	2 cut(s)	533, 562
BciT130I	CCWGG	3 cut(s)	326, 563, 702
BfaI	CTAG	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	369
BglI	GCCNNNNNGGC	1 cut(s)	644
BglII	AGATCT	1 cut(s)	188
BisI	GCNGC	2 cut(s)	397, 648
BlsI	GCNGC	2 cut(s)	398, 649
Bme1390I	CCNGG	3 cut(s)	326, 563, 702
Bme18I	GGWCC	1 cut(s)	179
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	3 cut(s)	326, 563, 702
BmrI	ACTGGG	1 cut(s)	336
BmuI	ACTGGG	1 cut(s)	336
BpiI	GAAGAC	2 cut(s)	159, 202
BpmI	CTGGAG	1 cut(s)	584
Bsa29I	ATCGAT	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	4 cut(s)	434, 568, 654, 716
Bse118I	RCCGGY	2 cut(s)	97, 650
Bse1I	ACTGG	1 cut(s)	342
Bse8I	GATNNNNATC	1 cut(s)	205
BseBI	CCWGG	3 cut(s)	326, 563, 702
BseCI	ATCGAT	1 cut(s)	221
BseJI	GATNNNNATC	1 cut(s)	205
BseLI	CCNNNNNNNGG	4 cut(s)	434, 568, 654, 716
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	408
Bsh1285I	CGRYCG	1 cut(s)	221
BshFI	GGCC	2 cut(s)	647, 709
BshVI	ATCGAT	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	3 cut(s)	98, 651, 710
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	4 cut(s)	434, 568, 654, 716
BsmFI	GGGAC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	312
BsnI	GGCC	2 cut(s)	647, 709
BsoBI	CYCGRG	1 cut(s)	228
Bsp1407I	TGTACA	2 cut(s)	21, 354
Bsp143I	GATC	9 cut(s)	165, 188, 200, 206, 218, 424, 461, 477, 529
BspACI	CCGC	4 cut(s)	110, 245, 297, 648
BspANI	GGCC	2 cut(s)	647, 709
BspCNI	CTCAG	1 cut(s)	679
BspDI	ATCGAT	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	3 cut(s)	173, 195, 419
BsrFI	RCCGGY	2 cut(s)	97, 650
BsrGI	TGTACA	2 cut(s)	21, 354
BsrI	ACTGG	1 cut(s)	342
BssAI	RCCGGY	2 cut(s)	97, 650
BssMI	GATC	9 cut(s)	165, 188, 200, 206, 218, 424, 461, 477, 529
Bst2UI	CCWGG	3 cut(s)	326, 563, 702
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstAUI	TGTACA	2 cut(s)	21, 354
BstC8I	GCNNGC	4 cut(s)	114, 174, 652, 656
BstDEI	CTNAG	2 cut(s)	600, 687
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	2 cut(s)	368, 396
BstKTI	GATC	9 cut(s)	168, 191, 203, 209, 221, 427, 464, 480, 532
BstMBI	GATC	9 cut(s)	165, 188, 200, 206, 218, 424, 461, 477, 529
BstMCI	CGRYCG	1 cut(s)	221
BstMWI	GCNNNNNNNGC	3 cut(s)	309, 374, 644
BstNI	CCWGG	3 cut(s)	326, 563, 702
BstSCI	CCNGG	3 cut(s)	324, 561, 700
BstV1I	GCAGC	1 cut(s)	408
BstV2I	GAAGAC	2 cut(s)	159, 202
BstX2I	RGATCY	2 cut(s)	188, 424
BstYI	RGATCY	2 cut(s)	188, 424
Bsu15I	ATCGAT	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	647, 709
BsuTUI	ATCGAT	1 cut(s)	221
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	2 cut(s)	56, 367
Cac8I	GCNNGC	4 cut(s)	114, 174, 652, 656
CfoI	GCGC	2 cut(s)	368, 396
Cfr10I	RCCGGY	2 cut(s)	97, 650
Cfr13I	GGNCC	1 cut(s)	179
ClaI	ATCGAT	1 cut(s)	221
CseI	GACGC	2 cut(s)	30, 55
Csp6I	GTAC	3 cut(s)	22, 355, 431
CviAII	CATG	2 cut(s)	455, 502
CviQI	GTAC	3 cut(s)	22, 355, 431
DdeI	CTNAG	2 cut(s)	600, 687
DpnI	GATC	9 cut(s)	167, 190, 202, 208, 220, 426, 463, 479, 531
DpnII	GATC	9 cut(s)	165, 188, 200, 206, 218, 424, 461, 477, 529
DraIII	CACNNNGTG	1 cut(s)	19
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	150
Eam1105I	GACNNNNNGTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	2 cut(s)	99, 234
Eco47I	GGWCC	1 cut(s)	179
Eco57I	CTGAAG	4 cut(s)	171, 270, 441, 696
Eco88I	CYCGRG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	3 cut(s)	324, 561, 700
FaeI	CATG	2 cut(s)	458, 505
FaiI	YATR	4 cut(s)	62, 350, 456, 503
FalI	AAGNNNNNCTT	3 cut(s)	129, 161, 706
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	2 cut(s)	454, 501
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	397, 648
Fsp4HI	GCNGC	2 cut(s)	397, 648
FspBI	CTAG	1 cut(s)	74
FspI	TGCGCA	1 cut(s)	395
GlaI	GCGC	2 cut(s)	367, 395
GluI	GCNGC	2 cut(s)	397, 648
GsuI	CTGGAG	1 cut(s)	584
HaeII	RGCGCY	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	647, 709
HapII	CCGG	3 cut(s)	98, 651, 710
HgaI	GACGC	2 cut(s)	30, 55
HhaI	GCGC	2 cut(s)	368, 396
Hin1II	CATG	2 cut(s)	458, 505
Hin6I	GCGC	2 cut(s)	366, 394
HinP1I	GCGC	2 cut(s)	366, 394
HincII	GTYRAC	2 cut(s)	45, 606
HindII	GTYRAC	2 cut(s)	45, 606
HinfI	GANTC	3 cut(s)	223, 268, 498
HpaII	CCGG	3 cut(s)	98, 651, 710
Hpy166II	GTNNAC	4 cut(s)	22, 45, 355, 606
Hpy188I	TCNGA	5 cut(s)	87, 130, 408, 421, 688
Hpy188III	TCNNGA	5 cut(s)	149, 192, 204, 210, 533
Hpy8I	GTNNAC	4 cut(s)	22, 45, 355, 606
Hpy99I	CGWCG	4 cut(s)	46, 49, 216, 219
HpyAV	CCTTC	5 cut(s)	135, 275, 347, 699, 702
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	290, 312, 414
HpyF10VI	GCNNNNNNNGC	3 cut(s)	309, 374, 644
HpyF3I	CTNAG	2 cut(s)	600, 687
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	458, 505
HspAI	GCGC	2 cut(s)	366, 394
KroI	GCCGGC	1 cut(s)	650
KroNI	GCCGGC	1 cut(s)	652
Kzo9I	GATC	9 cut(s)	165, 188, 200, 206, 218, 424, 461, 477, 529
LmnI	GCTCC	2 cut(s)	38, 247
Lsp1109I	GCAGC	1 cut(s)	408
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	9 cut(s)	167, 190, 202, 208, 220, 426, 463, 479, 531
MboI	GATC	9 cut(s)	165, 188, 200, 206, 218, 424, 461, 477, 529
MboII	GAAGA	7 cut(s)	100, 137, 164, 198, 207, 434, 539
MflI	RGATCY	2 cut(s)	188, 424
MluCI	AATT	2 cut(s)	285, 585
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	7 cut(s)	124, 151, 192, 224, 237, 293, 710
MroNI	GCCGGC	1 cut(s)	650
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	1 cut(s)	618
MslI	CAYNNNNRTG	1 cut(s)	537
MspI	CCGG	3 cut(s)	98, 651, 710
MspR9I	CCNGG	3 cut(s)	326, 563, 702
Mva1269I	GAATGC	1 cut(s)	312
MvaI	CCWGG	3 cut(s)	326, 563, 702
MwoI	GCNNNNNNNGC	3 cut(s)	309, 374, 644
NaeI	GCCGGC	1 cut(s)	652
NdeII	GATC	9 cut(s)	165, 188, 200, 206, 218, 424, 461, 477, 529
NgoMIV	GCCGGC	1 cut(s)	650
NlaIII	CATG	2 cut(s)	458, 505
NlaIV	GGNNCC	1 cut(s)	243
NsbI	TGCGCA	1 cut(s)	395
PaeR7I	CTCGAG	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	2 cut(s)	190, 531
PctI	GAATGC	1 cut(s)	312
PdiI	GCCGGC	1 cut(s)	652
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	3 cut(s)	223, 268, 498
PfoI	TCCNGGA	1 cut(s)	700
PkrI	GCNGC	2 cut(s)	398, 649
Ple19I	CGATCG	1 cut(s)	221
PpuMI	RGGWCCY	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	179
Psp6I	CCWGG	3 cut(s)	324, 561, 700
PspGI	CCWGG	3 cut(s)	324, 561, 700
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	179
PspPPI	RGGWCCY	1 cut(s)	179
PspXI	VCTCGAGB	1 cut(s)	228
PsuI	RGATCY	2 cut(s)	188, 424
PvuI	CGATCG	1 cut(s)	221
RsaI	GTAC	3 cut(s)	23, 356, 432
RsaNI	GTAC	3 cut(s)	22, 355, 431
RseI	CAYNNNNRTG	1 cut(s)	537
SalI	GTCGAC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	2 cut(s)	397, 648
Sau3AI	GATC	9 cut(s)	165, 188, 200, 206, 218, 424, 461, 477, 529
Sau96I	GGNCC	1 cut(s)	179
ScrFI	CCNGG	3 cut(s)	326, 563, 702
Sfr274I	CTCGAG	1 cut(s)	228
SgrAI	CRCCGGYG	1 cut(s)	97
SgrDI	CGTCGACG	1 cut(s)	43
SinI	GGWCC	1 cut(s)	179
SlaI	CTCGAG	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	537
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	285, 585
SsiI	CCGC	4 cut(s)	110, 245, 297, 648
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	3 cut(s)	324, 561, 700
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	1 cut(s)	387
TasI	AATT	2 cut(s)	285, 585
TatI	WGTACW	3 cut(s)	21, 354, 430
TauI	GCSGC	1 cut(s)	650
TfiI	GAWTC	3 cut(s)	223, 268, 498
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	2 cut(s)	56, 367
TseI	GCWGC	1 cut(s)	396
TspDTI	ATGAA	1 cut(s)	490
TspGWI	ACGGA	2 cut(s)	51, 623
TspRI	CASTG	2 cut(s)	56, 367
VpaK11BI	GGWCC	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	591
XhoI	CTCGAG	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.