RLG00000035432

Phosducin-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002093
Physical Location & Seq
Forward (+)
66898146 .. 66899353
1208 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035432

Sequence Viewer

Length: 684 bp
ATGGAGCCTCCACGCAGTGGGACGATATTCAGGCAAAGCTCGGCAATCTTCCACCGAAGAAACCGGCGTTTAAGCCTCCTCCCTTCACTCCGGCCGAGGACGAAGCCTCTCTTCCTAAAGACAAGTCTTAGATCGATTACAAGACCGAGCAGGACCTTGAAGATCTCGAAGACGATCCCGATCACGACGACAATCGCTTCCTTAAGAGCAAGTGCACCGCATCAGGCAAAAGGAGAGGAAGACAGGAGGAAGAGGCTGTCTGAATTGAGAGAAGCAGCGAAGGTTGCAAGGTTTGGATCATTGGTTCTGATTTCTGGATCAGATTTTGTGCTTGAGGTTTCTCAAGCTCCACCTGACGTTTGGGTGGTGGTGATTCTTTACAAAGAAGGAATTGCAAAGTATGGATTGTTGATGCAGTGTCTGGAAGATTTGGCAACTAAGTACCCAGCAACCAAATTTGTGAAAATAATATCAACAGACTGCATTCCTAACTACCCGGATCGTAATCTTCCCACTCTTTCAGTGTACAACAGTGGCGCTGTCAAAGCCAATCACGTTGGGTTGCGCAGCTTTGGTCGGAGGTGCACACCTGAAGGTGTGGCATTAGCTCTTTGTCAATCAGATCCTGTACTTAATGATGGGCAGAGTGTCAATGGTCGATCAAGGGAAGCTGTGATTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phosducin

Protein Analysis

228

Amino Acids

25.17

Weight (kDa)

10.28

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phosducin PF02114 81 - 187 2.4e-07 Phosducin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 566
AccB7I CCANNNNNTGG 1 cut(s) 17
AciI CCGC 1 cut(s) 218
AclWI GGATC 5 cut(s) 169, 304, 325, 507, 617
AcoI YGGCCR 1 cut(s) 92
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 1 cut(s) 612
AdeI CACNNNGTG 1 cut(s) 17
AfaI GTAC 3 cut(s) 443, 527, 630
AfiI CCNNNNNNNGG 1 cut(s) 17
AflII CTTAAG 1 cut(s) 202
AgsI TTSAA 1 cut(s) 160
AloI GAACNNNNNNTCC 2 cut(s) 288, 320
AluBI AGCT 5 cut(s) 39, 347, 570, 608, 671
AluI AGCT 5 cut(s) 39, 347, 570, 608, 671
Alw21I GWGCWC 2 cut(s) 217, 587
Alw44I GTGCAC 2 cut(s) 213, 583
AlwI GGATC 5 cut(s) 169, 304, 325, 507, 617
AlwNI CAGNNNCTG 2 cut(s) 421, 626
AoxI GGCC 1 cut(s) 92
ApaLI GTGCAC 2 cut(s) 213, 583
ApeKI GCWGC 2 cut(s) 275, 567
ApoI RAATTY 1 cut(s) 455
AspLEI GCGC 2 cut(s) 539, 567
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 497
AsuHPI GGTGA 1 cut(s) 382
AvaII GGWCC 1 cut(s) 153
BaeGI GKGCMC 2 cut(s) 217, 587
BbsI GAAGAC 2 cut(s) 176, 246
Bbv12I GWGCWC 2 cut(s) 217, 587
BbvI GCAGC 2 cut(s) 287, 579
BccI CCATC 1 cut(s) 632
BcnI CCSGG 1 cut(s) 497
BfoI RGCGCY 1 cut(s) 540
BfrI CTTAAG 1 cut(s) 202
BglII AGATCT 1 cut(s) 162
BisI GCNGC 2 cut(s) 276, 568
BlsI GCNGC 2 cut(s) 277, 569
Bme1390I CCNGG 1 cut(s) 497
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 497
BmsI GCATC 2 cut(s) 229, 402
BpiI GAAGAC 2 cut(s) 176, 246
BpuEI CTTGAG 2 cut(s) 327, 353
BpuMI CCSGG 1 cut(s) 497
Bsa29I ATCGAT 1 cut(s) 134
BsaBI GATNNNNATC 2 cut(s) 179, 504
BsaJI CCNNGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse118I RCCGGY 1 cut(s) 63
Bse8I GATNNNNATC 2 cut(s) 179, 504
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 95
BseJI GATNNNNATC 2 cut(s) 179, 504
BseLI CCNNNNNNNGG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 68
BseSI GKGCMC 2 cut(s) 217, 587
BseX3I CGGCCG 1 cut(s) 92
BseXI GCAGC 2 cut(s) 287, 579
BseYI CCCAGC 1 cut(s) 445
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 1 cut(s) 94
BshVI ATCGAT 1 cut(s) 134
BsiEI CGRYCG 1 cut(s) 95
BsiHKAI GWGCWC 2 cut(s) 217, 587
BsiSI CCGG 3 cut(s) 64, 91, 497
BslFI GGGAC 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 17
BsmFI GGGAC 1 cut(s) 34
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 1 cut(s) 94
Bsp1286I GDGCHC 2 cut(s) 217, 587
Bsp1407I TGTACA 1 cut(s) 525
Bsp143I GATC 9 cut(s) 131, 162, 174, 180, 296, 317, 499, 622, 659
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 94
BspDI ATCGAT 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 5 cut(s) 169, 304, 325, 507, 617
BspTI CTTAAG 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 63
BsrGI TGTACA 1 cut(s) 525
BssAI RCCGGY 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 9 cut(s) 131, 162, 174, 180, 296, 317, 499, 622, 659
Bst4CI ACNGT 1 cut(s) 533
Bst6I CTCTTC 2 cut(s) 116, 245
BstAFI CTTAAG 1 cut(s) 202
BstAUI TGTACA 1 cut(s) 525
BstDEI CTNAG 2 cut(s) 128, 438
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 2 cut(s) 539, 567
BstKTI GATC 9 cut(s) 134, 165, 177, 183, 299, 320, 502, 625, 662
BstMBI GATC 9 cut(s) 131, 162, 174, 180, 296, 317, 499, 622, 659
BstMCI CGRYCG 1 cut(s) 95
BstMWI GCNNNNNNNGC 2 cut(s) 284, 545
BstSCI CCNGG 1 cut(s) 495
BstSLI GKGCMC 2 cut(s) 217, 587
BstV1I GCAGC 2 cut(s) 287, 579
BstV2I GAAGAC 2 cut(s) 176, 246
BstX2I RGATCY 2 cut(s) 162, 622
BstYI RGATCY 2 cut(s) 162, 622
BstZI CGGCCG 1 cut(s) 92
Bsu15I ATCGAT 1 cut(s) 134
BsuRI GGCC 1 cut(s) 94
BsuTUI ATCGAT 1 cut(s) 134
BtsI GCAGTG 2 cut(s) 22, 422
BtsIMutI CAGTG 4 cut(s) 22, 422, 528, 538
CaiI CAGNNNCTG 2 cut(s) 421, 626
CfoI GCGC 2 cut(s) 539, 567
Cfr10I RCCGGY 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 153
ClaI ATCGAT 1 cut(s) 134
Csp6I GTAC 3 cut(s) 442, 526, 629
CviQI GTAC 3 cut(s) 442, 526, 629
DdeI CTNAG 2 cut(s) 128, 438
DpnI GATC 9 cut(s) 133, 164, 176, 182, 298, 319, 501, 624, 661
DpnII GATC 9 cut(s) 131, 162, 174, 180, 296, 317, 499, 622, 659
DraIII CACNNNGTG 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 92
EagI CGGCCG 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 116, 245
EarI CTCTTC 2 cut(s) 116, 245
EclXI CGGCCG 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 153
Eco52I CGGCCG 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 612
EcoO109I RGGNCCY 1 cut(s) 153
FaiI YATR 1 cut(s) 402
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 276, 568
Fsp4HI GCNGC 2 cut(s) 276, 568
FspI TGCGCA 1 cut(s) 566
GlaI GCGC 2 cut(s) 538, 566
GluI GCNGC 2 cut(s) 276, 568
GsaI CCCAGC 1 cut(s) 449
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 1 cut(s) 94
HapII CCGG 3 cut(s) 64, 91, 497
HhaI GCGC 2 cut(s) 539, 567
Hin6I GCGC 2 cut(s) 537, 565
HinP1I GCGC 2 cut(s) 537, 565
HinfI GANTC 1 cut(s) 373
HpaII CCGG 3 cut(s) 64, 91, 497
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 3 cut(s) 215, 526, 585
Hpy188I TCNGA 5 cut(s) 262, 309, 322, 579, 622
Hpy188III TCNNGA 5 cut(s) 166, 178, 184, 315, 422
Hpy8I GTNNAC 3 cut(s) 215, 526, 585
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 4 cut(s) 93, 274, 380, 587
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4IV ACGT 2 cut(s) 357, 555
HpyCH4V TGCA 6 cut(s) 215, 287, 395, 415, 483, 585
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 545
HpyF3I CTNAG 2 cut(s) 128, 438
HpySE526I ACGT 2 cut(s) 357, 555
HspAI GCGC 2 cut(s) 537, 565
Kzo9I GATC 9 cut(s) 131, 162, 174, 180, 296, 317, 499, 622, 659
LmnI GCTCC 2 cut(s) 4, 352
Lsp1109I GCAGC 2 cut(s) 287, 579
LweI GCATC 2 cut(s) 229, 402
MaeII ACGT 2 cut(s) 357, 555
MalI GATC 9 cut(s) 133, 164, 176, 182, 298, 319, 501, 624, 661
MboI GATC 9 cut(s) 131, 162, 174, 180, 296, 317, 499, 622, 659
MboII GAAGA 9 cut(s) 40, 69, 103, 172, 181, 251, 262, 437, 500
MflI RGATCY 2 cut(s) 162, 622
MhlI GDGCHC 2 cut(s) 217, 587
MluCI AATT 3 cut(s) 263, 390, 455
MmeI TCCRAC 1 cut(s) 557
MseI TTAA 3 cut(s) 71, 203, 633
MspCI CTTAAG 1 cut(s) 202
MspI CCGG 3 cut(s) 64, 91, 497
MspR9I CCNGG 1 cut(s) 497
Mva1269I GAATGC 1 cut(s) 483
MwoI GCNNNNNNNGC 2 cut(s) 284, 545
NciI CCSGG 1 cut(s) 497
NdeII GATC 9 cut(s) 131, 162, 174, 180, 296, 317, 499, 622, 659
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 2 cut(s) 20, 120
NsbI TGCGCA 1 cut(s) 566
PctI GAATGC 1 cut(s) 483
PfeI GAWTC 1 cut(s) 373
PflMI CCANNNNNTGG 1 cut(s) 17
PkrI GCNGC 2 cut(s) 277, 569
PpuMI RGGWCCY 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PstNI CAGNNNCTG 2 cut(s) 421, 626
PsuI RGATCY 2 cut(s) 162, 622
RsaI GTAC 3 cut(s) 443, 527, 630
RsaNI GTAC 3 cut(s) 442, 526, 629
SaqAI TTAA 3 cut(s) 71, 203, 633
SatI GCNGC 2 cut(s) 276, 568
Sau3AI GATC 9 cut(s) 131, 162, 174, 180, 296, 317, 499, 622, 659
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 497
SduI GDGCHC 2 cut(s) 217, 587
SfaNI GCATC 2 cut(s) 229, 402
SinI GGWCC 1 cut(s) 153
SmlI CTYRAG 3 cut(s) 202, 332, 342
SmoI CTYRAG 3 cut(s) 202, 332, 342
Sse9I AATT 3 cut(s) 263, 390, 455
SsiI CCGC 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 495
TaaI ACNGT 1 cut(s) 533
TaiI ACGT 2 cut(s) 360, 558
TaqI TCGA 3 cut(s) 134, 167, 658
TaqII GACCGA 1 cut(s) 160
TasI AATT 3 cut(s) 263, 390, 455
TatI WGTACW 2 cut(s) 525, 628
TfiI GAWTC 1 cut(s) 373
Tru1I TTAA 3 cut(s) 71, 203, 633
Tru9I TTAA 3 cut(s) 71, 203, 633
TscAI CASTG 4 cut(s) 22, 422, 528, 538
TseI GCWGC 2 cut(s) 275, 567
TspRI CASTG 4 cut(s) 22, 422, 528, 538
Van91I CCANNNNNTGG 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 202
VneI GTGCAC 2 cut(s) 213, 583
VpaK11BI GGWCC 1 cut(s) 153
XapI RAATTY 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.