Rroxscaffold_6G00404300

Phosducin-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002093
Physical Location & Seq
Forward (+)
26824529 .. 26826594
2066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404300.1

Sequence Viewer

Length: 888 bp
ATGGGGGACTATCACTATATCTACAAGGACTTGGACGGAGCCTCCACCCAGTGGGACGATATTCAGGCAAAGCTCGGCAATCTTCCGCCGAAGAAGCCGGCGTTTAAGCCCCGCCCTTCACTCCGGCCGAGGACGAAGCCTCTCTTCCCAAAAACAAGTCTTGGATCGATGACAAGACCGAGCAGGACCTCGAAGATCTCGAAGACGATCCCGATCTCGACGACGATCGCTTCCTCGAGGAATACAGGTAAAGCCCTCCACTTTCCATCTCCAATTTCCAACTCAATTGTTCCCATCTTGTTGGAATCACCAAAAATATCATCTTTATTGCTGTGTGTTTATGAGAGAGTAAAGAATGGCGTGGTTTTGTTTGACAGGAGGAAGAGGCTGTCTGAATTGAGAGAAGCAGCGAAGGTTGCAAGGTTTGGATCAGTGGTTCCGATTTCGGGATCAGATTTTGTGCGTGAGGTTTCTCAAGCTCCACCTGACGTTTGGGTGGTGGTGATTCTGTACAAAGAAGGAATTGCAGAGTGTGGATTGTTGATGCAGTGTCTGGAAGATTTGGCAACCAAGTACCCAGCAACCAAATTTGTGAAAATAATATCCACAGACTGCATTCCTAACTACCCGGATCGTAATCTTCCCACTCTTTTAGTGTACAACAGTGGCGCTGTCAAGGCCAATCACGTTGGGTTGCGCAGCTTTGGTCGGAGGTGCACACCCGAAGGTGTGGCATTAGTTCTCTGTCAATCAGATCCTGTACTTAATGATGGGCAGAGTGTTAATGGTCGATCAAGGGAGGCTGTGATTGAGGGAGTTCGCAAGAGGTTCATAGAGAAAGTTGTGACACAACATGAAGATAAGGACGATGGATATTCAAGTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phosducin

Protein Analysis

295

Amino Acids

32.63

Weight (kDa)

9.5

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phosducin PF02114 126 - 230 5.9e-10 Phosducin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 235
Acc16I TGCGCA 1 cut(s) 698
AccB7I CCANNNNNTGG 1 cut(s) 51
AciI CCGC 2 cut(s) 86, 112
AclWI GGATC 6 cut(s) 172, 202, 436, 457, 639, 749
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 1 cut(s) 587
AdeI CACNNNGTG 1 cut(s) 51
AfaI GTAC 4 cut(s) 512, 575, 659, 762
AfiI CCNNNNNNNGG 2 cut(s) 51, 446
AgsI TTSAA 1 cut(s) 879
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 3 cut(s) 73, 479, 702
AluI AGCT 3 cut(s) 73, 479, 702
Alw21I GWGCWC 1 cut(s) 719
Alw44I GTGCAC 1 cut(s) 715
AlwI GGATC 6 cut(s) 172, 202, 436, 457, 639, 749
AlwNI CAGNNNCTG 2 cut(s) 553, 758
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 2 cut(s) 125, 678
ApaLI GTGCAC 1 cut(s) 715
ApeKI GCWGC 2 cut(s) 407, 699
ApoI RAATTY 1 cut(s) 587
AspLEI GCGC 2 cut(s) 671, 699
AspS9I GGNCC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 629
AsuHPI GGTGA 2 cut(s) 300, 514
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 719
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 719
BbvI GCAGC 2 cut(s) 419, 711
BccI CCATC 4 cut(s) 274, 302, 764, 863
BcnI CCSGG 1 cut(s) 629
BfaI CTAG 1 cut(s) 886
BfoI RGCGCY 1 cut(s) 672
BglII AGATCT 1 cut(s) 195
BisI GCNGC 2 cut(s) 408, 700
BlsI GCNGC 2 cut(s) 409, 701
Bme1390I CCNGG 1 cut(s) 629
Bme18I GGWCC 1 cut(s) 186
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 2 cut(s) 40, 438
BmrFI CCNGG 1 cut(s) 629
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 534
BmuI ACTGGG 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 459
BpuMI CCSGG 1 cut(s) 629
Bsa29I ATCGAT 1 cut(s) 167
BsaBI GATNNNNATC 2 cut(s) 212, 636
BsaJI CCNNGG 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 446
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 49
Bse8I GATNNNNATC 2 cut(s) 212, 636
BseCI ATCGAT 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 128
BseJI GATNNNNATC 2 cut(s) 212, 636
BseLI CCNNNNNNNGG 2 cut(s) 51, 446
BseNI ACTGG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 719
BseX3I CGGCCG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 419, 711
BseYI CCCAGC 1 cut(s) 577
Bsh1285I CGRYCG 2 cut(s) 128, 228
BshFI GGCC 2 cut(s) 127, 680
BshVI ATCGAT 1 cut(s) 167
BsiEI CGRYCG 2 cut(s) 128, 228
BsiHKAI GWGCWC 1 cut(s) 719
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 3 cut(s) 98, 124, 629
BslFI GGGAC 2 cut(s) 20, 68
BslI CCNNNNNNNGG 2 cut(s) 51, 446
BsmFI GGGAC 2 cut(s) 20, 68
BsmI GAATGC 1 cut(s) 615
BsnI GGCC 2 cut(s) 127, 680
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 719
Bsp1407I TGTACA 2 cut(s) 510, 657
BspACI CCGC 2 cut(s) 86, 112
BspANI GGCC 2 cut(s) 127, 680
BspDI ATCGAT 1 cut(s) 167
BspLI GGNNCC 2 cut(s) 40, 438
BspPI GGATC 6 cut(s) 172, 202, 436, 457, 639, 749
BsrFI RCCGGY 1 cut(s) 97
BsrGI TGTACA 2 cut(s) 510, 657
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 665
Bst6I CTCTTC 2 cut(s) 149, 377
BstAUI TGTACA 2 cut(s) 510, 657
BstC8I GCNNGC 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 672
BstHHI GCGC 2 cut(s) 671, 699
BstMCI CGRYCG 2 cut(s) 128, 228
BstMWI GCNNNNNNNGC 3 cut(s) 94, 416, 677
BstSCI CCNGG 1 cut(s) 627
BstSLI GKGCMC 1 cut(s) 719
BstV1I GCAGC 2 cut(s) 419, 711
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 2 cut(s) 195, 754
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 2 cut(s) 195, 754
BstZI CGGCCG 1 cut(s) 125
Bsu15I ATCGAT 1 cut(s) 167
BsuRI GGCC 2 cut(s) 127, 680
BsuTUI ATCGAT 1 cut(s) 167
BtsI GCAGTG 1 cut(s) 554
BtsIMutI CAGTG 4 cut(s) 56, 438, 554, 670
Cac8I GCNNGC 1 cut(s) 99
CaiI CAGNNNCTG 2 cut(s) 553, 758
CfoI GCGC 2 cut(s) 671, 699
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 186
ClaI ATCGAT 1 cut(s) 167
Csp6I GTAC 4 cut(s) 511, 574, 658, 761
CviAII CATG 1 cut(s) 854
CviQI GTAC 4 cut(s) 511, 574, 658, 761
DraIII CACNNNGTG 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 125
EagI CGGCCG 1 cut(s) 125
Eam1104I CTCTTC 2 cut(s) 149, 377
EarI CTCTTC 2 cut(s) 149, 377
EciI GGCGGA 1 cut(s) 75
EclXI CGGCCG 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 186
Eco52I CGGCCG 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 186
FaeI CATG 1 cut(s) 857
FaiI YATR 4 cut(s) 18, 342, 833, 855
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 2 cut(s) 20, 68
FatI CATG 1 cut(s) 853
FauI CCCGC 1 cut(s) 119
Fnu4HI GCNGC 2 cut(s) 408, 700
Fsp4HI GCNGC 2 cut(s) 408, 700
FspBI CTAG 1 cut(s) 886
FspI TGCGCA 1 cut(s) 698
GlaI GCGC 2 cut(s) 670, 698
GluI GCNGC 2 cut(s) 408, 700
GsaI CCCAGC 1 cut(s) 581
HaeII RGCGCY 1 cut(s) 672
HaeIII GGCC 2 cut(s) 127, 680
HapII CCGG 3 cut(s) 98, 124, 629
HhaI GCGC 2 cut(s) 671, 699
Hin1II CATG 1 cut(s) 857
Hin6I GCGC 2 cut(s) 669, 697
HinP1I GCGC 2 cut(s) 669, 697
HinfI GANTC 2 cut(s) 305, 505
HpaII CCGG 3 cut(s) 98, 124, 629
HphI GGTGA 2 cut(s) 300, 514
Hpy166II GTNNAC 2 cut(s) 658, 717
Hpy188I TCNGA 5 cut(s) 394, 441, 454, 711, 754
Hpy188III TCNNGA 5 cut(s) 199, 211, 217, 447, 554
Hpy8I GTNNAC 2 cut(s) 658, 717
Hpy99I CGWCG 2 cut(s) 223, 226
HpyAV CCTTC 4 cut(s) 126, 406, 512, 719
HpyCH4III ACNGT 1 cut(s) 665
HpyCH4IV ACGT 2 cut(s) 489, 687
HpyCH4V TGCA 5 cut(s) 419, 527, 547, 615, 717
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 416, 677
HpySE526I ACGT 2 cut(s) 489, 687
Hsp92II CATG 1 cut(s) 857
HspAI GCGC 2 cut(s) 669, 697
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
LmnI GCTCC 2 cut(s) 38, 484
Lsp1109I GCAGC 2 cut(s) 419, 711
LweI GCATC 1 cut(s) 534
MaeI CTAG 1 cut(s) 886
MaeII ACGT 2 cut(s) 489, 687
MaeIII GTNAC 2 cut(s) 844, 881
MboII GAAGA 9 cut(s) 74, 103, 136, 205, 214, 394, 569, 632, 869
MfeI CAATTG 1 cut(s) 285
MflI RGATCY 2 cut(s) 195, 754
MhlI GDGCHC 1 cut(s) 719
MluCI AATT 5 cut(s) 273, 285, 395, 522, 587
MmeI TCCRAC 3 cut(s) 282, 303, 689
MroNI GCCGGC 1 cut(s) 97
MseI TTAA 3 cut(s) 105, 765, 783
MspI CCGG 3 cut(s) 98, 124, 629
MspR9I CCNGG 1 cut(s) 629
MunI CAATTG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 615
MwoI GCNNNNNNNGC 3 cut(s) 94, 416, 677
NaeI GCCGGC 1 cut(s) 99
NciI CCSGG 1 cut(s) 629
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 1 cut(s) 857
NlaIV GGNNCC 2 cut(s) 40, 438
NmeAIII GCCGAG 2 cut(s) 54, 153
NmuCI GTSAC 2 cut(s) 844, 881
NsbI TGCGCA 1 cut(s) 698
PaeR7I CTCGAG 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PctI GAATGC 1 cut(s) 615
PdiI GCCGGC 1 cut(s) 99
PfeI GAWTC 2 cut(s) 305, 505
PflMI CCANNNNNTGG 1 cut(s) 51
PkrI GCNGC 2 cut(s) 409, 701
Ple19I CGATCG 1 cut(s) 228
PpuMI RGGWCCY 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 577
PspN4I GGNNCC 2 cut(s) 40, 438
PspPI GGNCC 1 cut(s) 186
PspPPI RGGWCCY 1 cut(s) 186
PspXI VCTCGAGB 1 cut(s) 235
PstNI CAGNNNCTG 2 cut(s) 553, 758
PsuI RGATCY 2 cut(s) 195, 754
PvuI CGATCG 1 cut(s) 228
RsaI GTAC 4 cut(s) 512, 575, 659, 762
RsaNI GTAC 4 cut(s) 511, 574, 658, 761
SaqAI TTAA 3 cut(s) 105, 765, 783
SatI GCNGC 2 cut(s) 408, 700
Sau96I GGNCC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 629
SduI GDGCHC 1 cut(s) 719
SfaNI GCATC 1 cut(s) 534
Sfr274I CTCGAG 1 cut(s) 235
SinI GGWCC 1 cut(s) 186
SlaI CTCGAG 1 cut(s) 235
SmlI CTYRAG 2 cut(s) 235, 474
SmoI CTYRAG 2 cut(s) 235, 474
Sse9I AATT 5 cut(s) 273, 285, 395, 522, 587
SsiI CCGC 2 cut(s) 86, 112
SspMI CTAG 1 cut(s) 886
StyD4I CCNGG 1 cut(s) 627
TaaI ACNGT 1 cut(s) 665
TaiI ACGT 2 cut(s) 492, 690
TaqI TCGA 6 cut(s) 167, 191, 200, 218, 236, 790
TaqII GACCGA 1 cut(s) 193
TasI AATT 5 cut(s) 273, 285, 395, 522, 587
TatI WGTACW 3 cut(s) 510, 657, 760
TfiI GAWTC 2 cut(s) 305, 505
Tru1I TTAA 3 cut(s) 105, 765, 783
Tru9I TTAA 3 cut(s) 105, 765, 783
TscAI CASTG 4 cut(s) 56, 438, 554, 670
TseFI GTSAC 2 cut(s) 844, 881
TseI GCWGC 2 cut(s) 407, 699
Tsp45I GTSAC 2 cut(s) 844, 881
TspDTI ATGAA 2 cut(s) 820, 870
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 4 cut(s) 56, 438, 554, 670
Van91I CCANNNNNTGG 1 cut(s) 51
VneI GTGCAC 1 cut(s) 715
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 1 cut(s) 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 489
XhoI CTCGAG 1 cut(s) 235
XspI CTAG 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.