Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030318.1

Orthogroup ID

OG0002093

Physical Location & Seq

Genomic Coordinates Forward (+)

613 .. 4694

Gene Structure 4082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030318.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgatggaacatcactttgtgtacaaagacttggacggagcgtcgacgcagtgggacgatatacaggcaaagctagagaatattcggaagaagccaccggcgttctatccgccagctttcactccttcggaggacgaagcctctcttcctgaagacaagaagtggatcgagcgagcaggacctcgaagatctcgaagacgatcccgatctcgacgacgatcgattcctcgaggaatacaggctccgcctgaagtttgtgtggttgtgattctctacaaagaaggaattgcagagtgcggaggcacagactggattcctaactacctggattgtagcgttcccagtcttatagtgtacaacagtggcgctgtgaaagccaatcacgttgggttgcgcagctttggtcggaaatgcacttctgaagatcctgtacttggtaataggcaaagtggtcatggtcgatcaagggaagctgtgatcgaaagagttcgcaagagattcatggagaaagttgtgatacaacacgaagatcacgatgatggctactcaacacgggaacaaattaacgtgaaggctcacctgatgtgggcagtgctggactgcctggagatggggattggattaccaatttcgatttggtctaagttgacggattaccttaacaacttgaaccgaactgccaataaggccgccggctggctcaaaactttcttggctgaagctctatctgagccttcttttcctggaaggccggaaagagggacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin

Protein Analysis

255

Amino Acids

28.93

Weight (kDa)

9.07

Isoelectric Point (pI)

62.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14240
fragaria_vesca	FvH4_6g20890 FvH4_6g20890 FvH4_6g20890
malus_domestica	MD09G1015300.v1.1 MD17G1015400.v1.1
prunus_persica	Prupe.3G302500_v2.0.a1 Prupe.6G027300_v2.0.a1 Prupe.6G027300_v2.0.a1
pyrus_communis	pycom111g01240 pycom17g01260
rosa_chinensis	RchiOBHm_Chr1g0359641 RchiOBHm_Chr1g0359651 RchiOBHm_Chr2g0174741 RchiOBHm_Chr3g0477231 RchiOBHm_Chr3g0477241 RchiOBHm_Chr6g0252661
rosa_laevigata	RLG00000023735 RLG00000035432
rosa_multiflora	Rmu_sc0030318.1_g000001 Rmu_ssc0000313.1_g000003
rosa_roxburghii	Rroxscaffold_6G00404300 Rroxscaffold_6G00404780
rosa_rugosa	Rorug02G0109900 Rorug03G0158900 Rorug05G0567300 Rorug07G0186500
rosa_samantha	Rh1AG466100 Rh2AG497000 Rh2AG660500 Rh2BG671300 Rh2CG483100 Rh3AG209500 Rh3BG242800 Rh3BG242900 Rh3CG237000 Rh3DG236100 Rh4AG255500 Rh4BG260900 Rh6BG064900 Rh7BG354100
rosa_wichuraiana	Rw0G000240 Rw0G021750 Rw2G054110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	228
Acc16I	TGCGCA	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	44
AciI	CCGC	4 cut(s)	110, 245, 297, 690
AclWI	GGATC	3 cut(s)	173, 195, 419
AcuI	CTGAAG	4 cut(s)	171, 270, 441, 738
AdeI	CACNNNGTG	1 cut(s)	19
AfaI	GTAC	3 cut(s)	23, 356, 432
AfiI	CCNNNNNNNGG	5 cut(s)	434, 586, 610, 696, 758
AgsI	TTSAA	1 cut(s)	670
AhdI	GACNNNNNGTC	1 cut(s)	40
AjnI	CCWGG	3 cut(s)	324, 603, 742
AluBI	AGCT	5 cut(s)	73, 116, 399, 473, 722
AluI	AGCT	5 cut(s)	73, 116, 399, 473, 722
AlwI	GGATC	3 cut(s)	173, 195, 419
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	2 cut(s)	687, 749
ApeKI	GCWGC	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	486
AspLEI	GCGC	2 cut(s)	368, 396
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	569
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	179
BarI	GAAGNNNNNNTAC	2 cut(s)	414, 446
BbsI	GAAGAC	2 cut(s)	159, 202
BbvI	GCAGC	1 cut(s)	408
BccI	CCATC	2 cut(s)	533, 604
BciT130I	CCWGG	3 cut(s)	326, 605, 744
BfaI	CTAG	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	369
BglI	GCCNNNNNGGC	1 cut(s)	686
BglII	AGATCT	1 cut(s)	188
BisI	GCNGC	2 cut(s)	397, 690
BlsI	GCNGC	2 cut(s)	398, 691
Bme1390I	CCNGG	3 cut(s)	326, 605, 744
Bme18I	GGWCC	1 cut(s)	179
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	3 cut(s)	326, 605, 744
BmrI	ACTGGG	1 cut(s)	336
BmuI	ACTGGG	1 cut(s)	336
BpiI	GAAGAC	2 cut(s)	159, 202
BpmI	CTGGAG	1 cut(s)	626
Bsa29I	ATCGAT	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	5 cut(s)	434, 586, 610, 696, 758
Bse118I	RCCGGY	2 cut(s)	97, 692
Bse1I	ACTGG	2 cut(s)	314, 342
Bse8I	GATNNNNATC	1 cut(s)	205
BseBI	CCWGG	3 cut(s)	326, 605, 744
BseCI	ATCGAT	1 cut(s)	221
BseJI	GATNNNNATC	1 cut(s)	205
BseLI	CCNNNNNNNGG	5 cut(s)	434, 586, 610, 696, 758
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	2 cut(s)	314, 342
BseXI	GCAGC	1 cut(s)	408
Bsh1285I	CGRYCG	1 cut(s)	221
BshFI	GGCC	2 cut(s)	689, 751
BshVI	ATCGAT	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	3 cut(s)	98, 693, 752
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	5 cut(s)	434, 586, 610, 696, 758
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	689, 751
BsoBI	CYCGRG	1 cut(s)	228
Bsp1407I	TGTACA	2 cut(s)	21, 354
Bsp143I	GATC	9 cut(s)	165, 188, 200, 206, 218, 424, 461, 477, 529
BspACI	CCGC	4 cut(s)	110, 245, 297, 690
BspANI	GGCC	2 cut(s)	689, 751
BspCNI	CTCAG	1 cut(s)	721
BspDI	ATCGAT	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	3 cut(s)	173, 195, 419
BsrFI	RCCGGY	2 cut(s)	97, 692
BsrGI	TGTACA	2 cut(s)	21, 354
BsrI	ACTGG	2 cut(s)	314, 342
BssAI	RCCGGY	2 cut(s)	97, 692
BssMI	GATC	9 cut(s)	165, 188, 200, 206, 218, 424, 461, 477, 529
Bst2UI	CCWGG	3 cut(s)	326, 605, 744
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	150
BstAUI	TGTACA	2 cut(s)	21, 354
BstC8I	GCNNGC	4 cut(s)	114, 174, 694, 698
BstDEI	CTNAG	2 cut(s)	642, 729
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	2 cut(s)	368, 396
BstKTI	GATC	9 cut(s)	168, 191, 203, 209, 221, 427, 464, 480, 532
BstMBI	GATC	9 cut(s)	165, 188, 200, 206, 218, 424, 461, 477, 529
BstMCI	CGRYCG	1 cut(s)	221
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 686
BstNI	CCWGG	3 cut(s)	326, 605, 744
BstSCI	CCNGG	3 cut(s)	324, 603, 742
BstV1I	GCAGC	1 cut(s)	408
BstV2I	GAAGAC	2 cut(s)	159, 202
BstX2I	RGATCY	2 cut(s)	188, 424
BstYI	RGATCY	2 cut(s)	188, 424
Bsu15I	ATCGAT	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	689, 751
BsuTUI	ATCGAT	1 cut(s)	221
BtsI	GCAGTG	2 cut(s)	56, 597
BtsIMutI	CAGTG	3 cut(s)	56, 367, 597
Cac8I	GCNNGC	4 cut(s)	114, 174, 694, 698
CfoI	GCGC	2 cut(s)	368, 396
Cfr10I	RCCGGY	2 cut(s)	97, 692
Cfr13I	GGNCC	1 cut(s)	179
ClaI	ATCGAT	1 cut(s)	221
CseI	GACGC	2 cut(s)	30, 55
Csp6I	GTAC	3 cut(s)	22, 355, 431
CviAII	CATG	2 cut(s)	455, 502
CviQI	GTAC	3 cut(s)	22, 355, 431
DdeI	CTNAG	2 cut(s)	642, 729
DpnI	GATC	9 cut(s)	167, 190, 202, 208, 220, 426, 463, 479, 531
DpnII	GATC	9 cut(s)	165, 188, 200, 206, 218, 424, 461, 477, 529
DraIII	CACNNNGTG	1 cut(s)	19
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	150
Eam1105I	GACNNNNNGTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	2 cut(s)	99, 234
Eco47I	GGWCC	1 cut(s)	179
Eco57I	CTGAAG	4 cut(s)	171, 270, 441, 738
Eco88I	CYCGRG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	3 cut(s)	324, 603, 742
FaeI	CATG	2 cut(s)	458, 505
FaiI	YATR	4 cut(s)	62, 350, 456, 503
FalI	AAGNNNNNCTT	3 cut(s)	129, 161, 748
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	2 cut(s)	454, 501
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	397, 690
Fsp4HI	GCNGC	2 cut(s)	397, 690
FspBI	CTAG	1 cut(s)	74
FspI	TGCGCA	1 cut(s)	395
GlaI	GCGC	2 cut(s)	367, 395
GluI	GCNGC	2 cut(s)	397, 690
GsuI	CTGGAG	1 cut(s)	626
HaeII	RGCGCY	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	689, 751
HapII	CCGG	3 cut(s)	98, 693, 752
HgaI	GACGC	2 cut(s)	30, 55
HhaI	GCGC	2 cut(s)	368, 396
Hin1II	CATG	2 cut(s)	458, 505
Hin6I	GCGC	2 cut(s)	366, 394
HinP1I	GCGC	2 cut(s)	366, 394
HincII	GTYRAC	2 cut(s)	45, 648
HindII	GTYRAC	2 cut(s)	45, 648
HinfI	GANTC	4 cut(s)	223, 268, 313, 498
HpaII	CCGG	3 cut(s)	98, 693, 752
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	4 cut(s)	22, 45, 355, 648
Hpy188I	TCNGA	5 cut(s)	87, 130, 408, 421, 730
Hpy188III	TCNNGA	5 cut(s)	149, 192, 204, 210, 533
Hpy8I	GTNNAC	4 cut(s)	22, 45, 355, 648
Hpy99I	CGWCG	4 cut(s)	46, 49, 216, 219
HpyAV	CCTTC	5 cut(s)	135, 275, 565, 741, 744
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	2 cut(s)	384, 567
HpyCH4V	TGCA	2 cut(s)	290, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 686
HpyF3I	CTNAG	2 cut(s)	642, 729
HpySE526I	ACGT	2 cut(s)	384, 567
Hsp92II	CATG	2 cut(s)	458, 505
HspAI	GCGC	2 cut(s)	366, 394
KroI	GCCGGC	1 cut(s)	692
KroNI	GCCGGC	1 cut(s)	694
Kzo9I	GATC	9 cut(s)	165, 188, 200, 206, 218, 424, 461, 477, 529
LmnI	GCTCC	2 cut(s)	38, 247
Lsp1109I	GCAGC	1 cut(s)	408
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	2 cut(s)	384, 567
MalI	GATC	9 cut(s)	167, 190, 202, 208, 220, 426, 463, 479, 531
MboI	GATC	9 cut(s)	165, 188, 200, 206, 218, 424, 461, 477, 529
MboII	GAAGA	7 cut(s)	100, 137, 164, 198, 207, 434, 539
MflI	RGATCY	2 cut(s)	188, 424
MluCI	AATT	3 cut(s)	285, 561, 627
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	7 cut(s)	124, 151, 192, 224, 237, 293, 752
MroNI	GCCGGC	1 cut(s)	692
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	2 cut(s)	564, 660
MslI	CAYNNNNRTG	1 cut(s)	537
MspI	CCGG	3 cut(s)	98, 693, 752
MspR9I	CCNGG	3 cut(s)	326, 605, 744
MvaI	CCWGG	3 cut(s)	326, 605, 744
MwoI	GCNNNNNNNGC	2 cut(s)	374, 686
NaeI	GCCGGC	1 cut(s)	694
NdeII	GATC	9 cut(s)	165, 188, 200, 206, 218, 424, 461, 477, 529
NgoMIV	GCCGGC	1 cut(s)	692
NlaIII	CATG	2 cut(s)	458, 505
NlaIV	GGNNCC	1 cut(s)	243
NsbI	TGCGCA	1 cut(s)	395
PaeR7I	CTCGAG	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	2 cut(s)	190, 531
PdiI	GCCGGC	1 cut(s)	694
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	4 cut(s)	223, 268, 313, 498
PfoI	TCCNGGA	1 cut(s)	742
PkrI	GCNGC	2 cut(s)	398, 691
Ple19I	CGATCG	1 cut(s)	221
PpuMI	RGGWCCY	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	179
Psp6I	CCWGG	3 cut(s)	324, 603, 742
PspGI	CCWGG	3 cut(s)	324, 603, 742
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	179
PspPPI	RGGWCCY	1 cut(s)	179
PspXI	VCTCGAGB	1 cut(s)	228
PsuI	RGATCY	2 cut(s)	188, 424
PvuI	CGATCG	1 cut(s)	221
RsaI	GTAC	3 cut(s)	23, 356, 432
RsaNI	GTAC	3 cut(s)	22, 355, 431
RseI	CAYNNNNRTG	1 cut(s)	537
SalI	GTCGAC	1 cut(s)	43
SaqAI	TTAA	2 cut(s)	564, 660
SatI	GCNGC	2 cut(s)	397, 690
Sau3AI	GATC	9 cut(s)	165, 188, 200, 206, 218, 424, 461, 477, 529
Sau96I	GGNCC	1 cut(s)	179
ScrFI	CCNGG	3 cut(s)	326, 605, 744
Sfr274I	CTCGAG	1 cut(s)	228
SgrAI	CRCCGGYG	1 cut(s)	97
SgrDI	CGTCGACG	1 cut(s)	43
SinI	GGWCC	1 cut(s)	179
SlaI	CTCGAG	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	537
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	3 cut(s)	285, 561, 627
SsiI	CCGC	4 cut(s)	110, 245, 297, 690
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	3 cut(s)	324, 603, 742
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	2 cut(s)	387, 570
TasI	AATT	3 cut(s)	285, 561, 627
TatI	WGTACW	3 cut(s)	21, 354, 430
TauI	GCSGC	1 cut(s)	692
TfiI	GAWTC	4 cut(s)	223, 268, 313, 498
Tru1I	TTAA	2 cut(s)	564, 660
Tru9I	TTAA	2 cut(s)	564, 660
TscAI	CASTG	3 cut(s)	56, 367, 597
TseI	GCWGC	1 cut(s)	396
TspDTI	ATGAA	1 cut(s)	490
TspGWI	ACGGA	2 cut(s)	51, 665
TspRI	CASTG	3 cut(s)	56, 367, 597
VpaK11BI	GGWCC	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	633
XhoI	CTCGAG	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.